Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02260 and MMP_RS02265 are separated by 13 nucleotides MMP_RS02265 and MMP_RS02270 are separated by 62 nucleotides
MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578
_RS02260
MMP_RS02265: MMP_RS02265 - nitroreductase family protein, at 427,592 to 428,161
_RS02265
MMP_RS02270: MMP_RS02270 - replication factor C small subunit, at 428,224 to 429,171
_RS02270
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1 at 426.609 kb on + strand at 426.613 kb on - strand at 426.654 kb on + strand at 426.672 kb on + strand at 426.688 kb on - strand at 426.733 kb on + strand at 426.780 kb on - strand at 426.842 kb on - strand at 426.868 kb on - strand at 426.869 kb on + strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.875 kb on + strand at 426.875 kb on + strand at 426.883 kb on - strand at 426.884 kb on + strand at 427.051 kb on - strand, within MMP_RS02260 at 427.051 kb on - strand, within MMP_RS02260 at 427.052 kb on + strand, within MMP_RS02260 at 427.053 kb on - strand, within MMP_RS02260 at 427.063 kb on - strand, within MMP_RS02260 at 427.064 kb on + strand, within MMP_RS02260 at 427.123 kb on + strand, within MMP_RS02260 at 427.204 kb on + strand, within MMP_RS02260 at 427.204 kb on + strand, within MMP_RS02260 at 427.205 kb on - strand, within MMP_RS02260 at 427.205 kb on - strand, within MMP_RS02260 at 427.232 kb on - strand, within MMP_RS02260 at 427.236 kb on - strand, within MMP_RS02260 at 427.277 kb on - strand, within MMP_RS02260 at 427.277 kb on - strand, within MMP_RS02260 at 427.356 kb on - strand, within MMP_RS02260 at 427.469 kb on - strand, within MMP_RS02260 at 427.505 kb on + strand, within MMP_RS02260 at 427.516 kb on + strand at 427.539 kb on - strand at 427.540 kb on + strand at 427.557 kb on + strand at 427.735 kb on - strand, within MMP_RS02265 at 428.018 kb on - strand, within MMP_RS02265 at 428.019 kb on + strand, within MMP_RS02265 at 428.024 kb on + strand, within MMP_RS02265 at 428.151 kb on + strand at 428.225 kb on - strand at 428.230 kb on - strand at 428.261 kb on + strand at 428.384 kb on + strand at 428.387 kb on + strand at 428.427 kb on + strand at 428.606 kb on - strand at 429.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 426,609 + +0.3 426,613 - +0.3 426,654 + +0.3 426,672 + +0.3 426,688 - -0.4 426,733 + +0.5 426,780 - +0.7 426,842 - -0.2 426,868 - -0.4 426,869 + -0.2 426,874 - +1.3 426,874 - -0.2 426,874 - -0.1 426,875 + +0.4 426,875 + +0.1 426,883 - +0.8 426,884 + -0.2 427,051 - MMP_RS02260 0.18 +0.6 427,051 - MMP_RS02260 0.18 -0.3 427,052 + MMP_RS02260 0.18 +0.1 427,053 - MMP_RS02260 0.18 +0.3 427,063 - MMP_RS02260 0.20 +0.4 427,064 + MMP_RS02260 0.20 +0.1 427,123 + MMP_RS02260 0.29 -0.2 427,204 + MMP_RS02260 0.42 -0.1 427,204 + MMP_RS02260 0.42 +0.5 427,205 - MMP_RS02260 0.42 -0.1 427,205 - MMP_RS02260 0.42 -0.4 427,232 - MMP_RS02260 0.46 +1.0 427,236 - MMP_RS02260 0.47 +0.2 427,277 - MMP_RS02260 0.53 +0.2 427,277 - MMP_RS02260 0.53 +0.2 427,356 - MMP_RS02260 0.65 -0.3 427,469 - MMP_RS02260 0.83 +0.2 427,505 + MMP_RS02260 0.88 +0.7 427,516 + +0.7 427,539 - -0.1 427,540 + +0.4 427,557 + -0.5 427,735 - MMP_RS02265 0.25 -0.4 428,018 - MMP_RS02265 0.75 -0.9 428,019 + MMP_RS02265 0.75 -0.3 428,024 + MMP_RS02265 0.76 -0.5 428,151 + +0.1 428,225 - +0.1 428,230 - -0.0 428,261 + -2.3 428,384 + -0.9 428,387 + -1.0 428,427 + -2.6 428,606 - -2.3 429,090 - -2.1
Or see this region's nucleotide sequence