Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01985

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01975 and MMP_RS01980 are separated by 133 nucleotidesMMP_RS01980 and MMP_RS01985 are separated by 79 nucleotidesMMP_RS01985 and MMP_RS01990 are separated by 203 nucleotidesMMP_RS01990 and MMP_RS01995 are separated by 39 nucleotides MMP_RS01975: MMP_RS01975 - hypothetical protein, at 366,983 to 368,389 _RS01975 MMP_RS01980: MMP_RS01980 - trimeric intracellular cation channel family protein, at 368,523 to 369,152 _RS01980 MMP_RS01985: MMP_RS01985 - F420-dependent methylenetetrahydromethanopterin dehydrogenase, at 369,232 to 370,065 _RS01985 MMP_RS01990: MMP_RS01990 - hypothetical protein, at 370,269 to 370,517 _RS01990 MMP_RS01995: MMP_RS01995 - ribonuclease VapC5, at 370,557 to 371,087 _RS01995 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1at 368.273 kb on - strandat 368.320 kb on + strandat 368.327 kb on + strandat 368.331 kb on - strandat 368.331 kb on - strandat 368.354 kb on + strandat 368.365 kb on + strandat 368.374 kb on + strandat 368.380 kb on - strandat 368.399 kb on - strandat 368.448 kb on - strandat 368.470 kb on + strandat 368.471 kb on - strandat 368.473 kb on - strandat 368.474 kb on + strandat 368.493 kb on - strandat 368.494 kb on + strandat 368.494 kb on + strandat 368.497 kb on - strandat 368.497 kb on - strandat 368.528 kb on - strandat 368.604 kb on + strand, within MMP_RS01980at 368.615 kb on + strand, within MMP_RS01980at 368.646 kb on + strand, within MMP_RS01980at 368.691 kb on + strand, within MMP_RS01980at 368.707 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.788 kb on - strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.789 kb on + strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.799 kb on - strand, within MMP_RS01980at 368.807 kb on + strand, within MMP_RS01980at 368.865 kb on - strand, within MMP_RS01980at 368.866 kb on + strand, within MMP_RS01980at 368.867 kb on - strand, within MMP_RS01980at 368.868 kb on + strand, within MMP_RS01980at 368.894 kb on + strand, within MMP_RS01980at 368.898 kb on + strand, within MMP_RS01980at 368.935 kb on - strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.936 kb on + strand, within MMP_RS01980at 368.944 kb on - strand, within MMP_RS01980at 368.950 kb on - strand, within MMP_RS01980at 368.986 kb on + strand, within MMP_RS01980at 369.022 kb on + strand, within MMP_RS01980at 369.157 kb on - strandat 369.212 kb on - strandat 369.256 kb on + strandat 369.361 kb on - strand, within MMP_RS01985at 369.647 kb on + strand, within MMP_RS01985at 369.647 kb on + strand, within MMP_RS01985at 369.683 kb on + strand, within MMP_RS01985at 369.890 kb on + strand, within MMP_RS01985at 369.890 kb on + strand, within MMP_RS01985at 370.067 kb on + strandat 370.067 kb on + strandat 370.067 kb on + strandat 370.100 kb on - strandat 370.120 kb on - strandat 370.121 kb on + strandat 370.178 kb on - strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.215 kb on - strandat 370.223 kb on - strandat 370.318 kb on - strand, within MMP_RS01990at 370.318 kb on - strand, within MMP_RS01990at 370.344 kb on + strand, within MMP_RS01990at 370.382 kb on + strand, within MMP_RS01990at 370.516 kb on + strandat 370.554 kb on - strandat 370.555 kb on + strandat 370.555 kb on + strandat 370.591 kb on - strandat 370.592 kb on + strandat 370.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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368,273 - +0.1
368,320 + -0.1
368,327 + +0.4
368,331 - -0.2
368,331 - -0.3
368,354 + -0.2
368,365 + +0.3
368,374 + +0.7
368,380 - +0.1
368,399 - +0.8
368,448 - +0.0
368,470 + -0.7
368,471 - -0.8
368,473 - -0.7
368,474 + -0.8
368,493 - -0.8
368,494 + -0.3
368,494 + -0.4
368,497 - -1.0
368,497 - -1.0
368,528 - -0.5
368,604 + MMP_RS01980 0.13 -0.1
368,615 + MMP_RS01980 0.15 -1.0
368,646 + MMP_RS01980 0.20 -1.2
368,691 + MMP_RS01980 0.27 -1.0
368,707 - MMP_RS01980 0.29 -1.0
368,788 - MMP_RS01980 0.42 -0.7
368,788 - MMP_RS01980 0.42 -0.5
368,788 - MMP_RS01980 0.42 -0.9
368,789 + MMP_RS01980 0.42 -1.3
368,789 + MMP_RS01980 0.42 -1.1
368,799 - MMP_RS01980 0.44 -2.4
368,799 - MMP_RS01980 0.44 -0.4
368,807 + MMP_RS01980 0.45 -0.6
368,865 - MMP_RS01980 0.54 -0.9
368,866 + MMP_RS01980 0.54 -1.3
368,867 - MMP_RS01980 0.55 -1.5
368,868 + MMP_RS01980 0.55 -0.4
368,894 + MMP_RS01980 0.59 -0.5
368,898 + MMP_RS01980 0.60 -1.0
368,935 - MMP_RS01980 0.65 -0.7
368,936 + MMP_RS01980 0.66 -0.7
368,936 + MMP_RS01980 0.66 -0.6
368,936 + MMP_RS01980 0.66 -1.0
368,944 - MMP_RS01980 0.67 -0.5
368,950 - MMP_RS01980 0.68 -0.8
368,986 + MMP_RS01980 0.73 -1.3
369,022 + MMP_RS01980 0.79 -0.9
369,157 - +0.3
369,212 - -0.7
369,256 + -1.0
369,361 - MMP_RS01985 0.15 -1.2
369,647 + MMP_RS01985 0.50 -0.6
369,647 + MMP_RS01985 0.50 +0.3
369,683 + MMP_RS01985 0.54 -0.5
369,890 + MMP_RS01985 0.79 -0.7
369,890 + MMP_RS01985 0.79 -0.9
370,067 + -1.0
370,067 + -1.7
370,067 + -1.3
370,100 - -1.1
370,120 - -1.7
370,121 + -0.8
370,178 - +1.5
370,202 + -0.4
370,202 + -0.0
370,215 - +0.1
370,223 - +0.4
370,318 - MMP_RS01990 0.20 -0.6
370,318 - MMP_RS01990 0.20 +0.4
370,344 + MMP_RS01990 0.30 -0.1
370,382 + MMP_RS01990 0.45 -0.5
370,516 + -0.2
370,554 - +0.0
370,555 + +0.2
370,555 + -0.0
370,591 - -0.1
370,592 + -0.1
370,811 - +1.0

Or see this region's nucleotide sequence