Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01775 and MMP_RS01780 are separated by 160 nucleotides MMP_RS01780 and MMP_RS01785 are separated by 70 nucleotides MMP_RS01785 and MMP_RS01790 are separated by 47 nucleotides MMP_RS01790 and MMP_RS01795 are separated by 16 nucleotides
MMP_RS01775: MMP_RS01775 - TIGR00297 family protein, at 330,681 to 331,394
_RS01775
MMP_RS01780: MMP_RS01780 - TrmJ/YjtD family RNA methyltransferase, at 331,555 to 332,259
_RS01780
MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743
_RS01785
MMP_RS01790: MMP_RS01790 - restriction endonuclease, at 332,791 to 333,198
_RS01790
MMP_RS01795: MMP_RS01795 - methanogenesis marker 6 protein, at 333,215 to 333,661
_RS01795
Position (kb) 331
332
333 Strain fitness (log2 ratio) -1
0
1 at 330.598 kb on + strand at 330.599 kb on - strand at 330.603 kb on + strand at 330.604 kb on - strand at 330.604 kb on - strand at 330.628 kb on + strand at 330.756 kb on - strand, within MMP_RS01775 at 330.967 kb on - strand, within MMP_RS01775 at 331.348 kb on - strand at 331.372 kb on - strand at 331.388 kb on + strand at 331.388 kb on + strand at 331.439 kb on - strand at 331.439 kb on - strand at 331.463 kb on + strand at 331.471 kb on + strand at 331.499 kb on + strand at 331.503 kb on - strand at 331.504 kb on + strand at 331.510 kb on + strand at 331.806 kb on - strand, within MMP_RS01780 at 331.831 kb on + strand, within MMP_RS01780 at 331.884 kb on + strand, within MMP_RS01780 at 332.120 kb on - strand, within MMP_RS01780 at 332.146 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.160 kb on + strand, within MMP_RS01780 at 332.228 kb on - strand at 332.245 kb on + strand at 332.258 kb on + strand at 332.294 kb on + strand at 332.296 kb on - strand at 332.336 kb on + strand at 332.337 kb on - strand at 332.372 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.581 kb on - strand, within MMP_RS01785 at 332.674 kb on + strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.701 kb on + strand, within MMP_RS01785 at 332.727 kb on - strand at 332.731 kb on - strand at 332.779 kb on + strand at 332.779 kb on + strand at 332.788 kb on + strand at 332.789 kb on - strand at 332.789 kb on - strand at 332.790 kb on + strand at 332.790 kb on + strand at 332.792 kb on - strand at 333.021 kb on + strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.024 kb on + strand, within MMP_RS01790 at 333.045 kb on - strand, within MMP_RS01790 at 333.089 kb on + strand, within MMP_RS01790 at 333.154 kb on - strand, within MMP_RS01790 at 333.189 kb on - strand at 333.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 330,598 + +0.5 330,599 - -0.0 330,603 + -0.2 330,604 - -0.2 330,604 - +0.5 330,628 + +0.4 330,756 - MMP_RS01775 0.11 +0.6 330,967 - MMP_RS01775 0.40 +0.4 331,348 - +0.6 331,372 - +0.2 331,388 + +0.6 331,388 + +0.1 331,439 - +0.1 331,439 - +0.1 331,463 + -0.7 331,471 + -0.1 331,499 + -0.1 331,503 - +0.1 331,504 + -0.4 331,510 + -0.1 331,806 - MMP_RS01780 0.36 -1.4 331,831 + MMP_RS01780 0.39 -0.1 331,884 + MMP_RS01780 0.47 -0.4 332,120 - MMP_RS01780 0.80 -0.2 332,146 - MMP_RS01780 0.84 -0.6 332,159 - MMP_RS01780 0.86 -0.5 332,159 - MMP_RS01780 0.86 -0.6 332,159 - MMP_RS01780 0.86 -0.8 332,160 + MMP_RS01780 0.86 -0.6 332,228 - -0.7 332,245 + -0.1 332,258 + +0.1 332,294 + -0.1 332,296 - -0.2 332,336 + +0.7 332,337 - -0.1 332,372 - MMP_RS01785 0.10 -0.2 332,547 - MMP_RS01785 0.52 -0.2 332,547 - MMP_RS01785 0.52 -0.3 332,581 - MMP_RS01785 0.61 -0.8 332,674 + MMP_RS01785 0.83 +0.2 332,696 - MMP_RS01785 0.88 -0.4 332,696 - MMP_RS01785 0.88 +0.0 332,697 + MMP_RS01785 0.89 +0.3 332,697 + MMP_RS01785 0.89 +0.8 332,700 - MMP_RS01785 0.89 +0.0 332,700 - MMP_RS01785 0.89 +0.3 332,701 + MMP_RS01785 0.90 -0.1 332,727 - -0.1 332,731 - +0.3 332,779 + +0.2 332,779 + +0.4 332,788 + +1.3 332,789 - +0.1 332,789 - +0.0 332,790 + +0.8 332,790 + -0.0 332,792 - +1.0 333,021 + MMP_RS01790 0.56 +0.2 333,023 - MMP_RS01790 0.57 -0.1 333,023 - MMP_RS01790 0.57 -0.2 333,024 + MMP_RS01790 0.57 +0.0 333,045 - MMP_RS01790 0.62 -0.1 333,089 + MMP_RS01790 0.73 +0.4 333,154 - MMP_RS01790 0.89 -0.2 333,189 - +0.2 333,213 + +0.2
Or see this region's nucleotide sequence