Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01010 and MMP_RS01015 are separated by 250 nucleotides MMP_RS01015 and MMP_RS01020 are separated by 170 nucleotides MMP_RS01020 and MMP_RS01025 are separated by 120 nucleotides MMP_RS01025 and MMP_RS01030 are separated by 108 nucleotides
MMP_RS01010: MMP_RS01010 - DUF4352 domain-containing protein, at 191,240 to 191,773
_RS01010
MMP_RS01015: MMP_RS01015 - hypothetical protein, at 192,024 to 192,236
_RS01015
MMP_RS01020: MMP_RS01020 - 3 4-dihydroxy-2-butanone-4-phosphate synthase, at 192,407 to 193,150
_RS01020
MMP_RS01025: MMP_RS01025 - DUF120 domain-containing protein, at 193,271 to 193,654
_RS01025
MMP_RS01030: MMP_RS01030 - MTAP family purine nucleoside phosphorylase, at 193,763 to 194,524
_RS01030
Position (kb) 192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 191.442 kb on + strand, within MMP_RS01010 at 191.478 kb on + strand, within MMP_RS01010 at 191.519 kb on + strand, within MMP_RS01010 at 191.522 kb on - strand, within MMP_RS01010 at 191.523 kb on + strand, within MMP_RS01010 at 191.572 kb on - strand, within MMP_RS01010 at 191.572 kb on - strand, within MMP_RS01010 at 191.715 kb on + strand, within MMP_RS01010 at 191.740 kb on - strand at 191.750 kb on - strand at 191.750 kb on - strand at 191.753 kb on - strand at 191.754 kb on + strand at 191.754 kb on + strand at 191.754 kb on + strand at 191.755 kb on - strand at 191.756 kb on + strand at 191.779 kb on - strand at 191.780 kb on + strand at 191.781 kb on - strand at 191.795 kb on - strand at 191.795 kb on - strand at 191.795 kb on - strand at 191.801 kb on + strand at 191.801 kb on + strand at 191.841 kb on + strand at 191.852 kb on + strand at 191.854 kb on - strand at 191.855 kb on + strand at 191.871 kb on + strand at 191.874 kb on - strand at 191.875 kb on + strand at 191.912 kb on - strand at 191.993 kb on - strand at 191.994 kb on + strand at 192.305 kb on - strand at 192.321 kb on - strand at 192.749 kb on + strand, within MMP_RS01020 at 193.106 kb on - strand at 193.107 kb on + strand at 193.165 kb on + strand at 193.170 kb on - strand at 193.193 kb on + strand at 193.198 kb on - strand at 193.198 kb on - strand at 193.198 kb on - strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.200 kb on - strand at 193.200 kb on - strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.203 kb on + strand at 193.229 kb on - strand at 193.305 kb on + strand at 193.431 kb on + strand at 193.672 kb on - strand at 193.672 kb on - strand at 193.674 kb on - strand at 193.677 kb on + strand at 193.677 kb on + strand at 193.677 kb on + strand at 193.698 kb on + strand at 193.711 kb on + strand at 193.714 kb on - strand at 193.740 kb on + strand at 193.760 kb on - strand at 193.857 kb on - strand, within MMP_RS01030 at 193.989 kb on - strand, within MMP_RS01030 at 193.989 kb on - strand, within MMP_RS01030 at 194.124 kb on - strand, within MMP_RS01030
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 191,442 + MMP_RS01010 0.38 -0.1 191,478 + MMP_RS01010 0.45 +0.9 191,519 + MMP_RS01010 0.52 +0.1 191,522 - MMP_RS01010 0.53 -0.6 191,523 + MMP_RS01010 0.53 +0.2 191,572 - MMP_RS01010 0.62 -0.5 191,572 - MMP_RS01010 0.62 -0.2 191,715 + MMP_RS01010 0.89 +0.3 191,740 - -0.6 191,750 - +0.2 191,750 - -0.2 191,753 - -0.1 191,754 + +0.1 191,754 + -0.6 191,754 + -0.3 191,755 - +0.3 191,756 + -0.2 191,779 - -0.0 191,780 + +0.5 191,781 - +0.1 191,795 - +0.1 191,795 - -0.1 191,795 - +0.1 191,801 + -0.3 191,801 + +0.1 191,841 + +0.1 191,852 + -0.0 191,854 - +0.3 191,855 + +0.1 191,871 + +0.8 191,874 - -0.4 191,875 + +0.2 191,912 - +0.2 191,993 - -0.2 191,994 + -0.0 192,305 - +0.4 192,321 - -0.0 192,749 + MMP_RS01020 0.46 -3.3 193,106 - -2.4 193,107 + -2.4 193,165 + +0.3 193,170 - +0.3 193,193 + -0.0 193,198 - -0.3 193,198 - -0.6 193,198 - -0.1 193,199 + +0.0 193,199 + +0.6 193,199 + +0.3 193,199 + +0.0 193,199 + +1.1 193,200 - +0.1 193,200 - -0.0 193,201 + +0.1 193,201 + +0.3 193,201 + -0.0 193,201 + -0.1 193,201 + +0.1 193,201 + -0.1 193,203 + -0.2 193,229 - -0.2 193,305 + -2.8 193,431 + -1.0 193,672 - -3.4 193,672 - -1.2 193,674 - -2.8 193,677 + -1.8 193,677 + -4.5 193,677 + -3.0 193,698 + -0.4 193,711 + -1.1 193,714 - -1.0 193,740 + -0.2 193,760 - -0.2 193,857 - MMP_RS01030 0.12 -1.1 193,989 - MMP_RS01030 0.30 -2.7 193,989 - MMP_RS01030 0.30 -1.2 194,124 - MMP_RS01030 0.47 -1.2
Or see this region's nucleotide sequence