Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00055 and MMP_RS00060 are separated by 127 nucleotides MMP_RS00060 and MMP_RS00065 are separated by 381 nucleotides
MMP_RS00055: MMP_RS00055 - DUF2254 domain-containing protein, at 13,625 to 15,208
_RS00055
MMP_RS00060: MMP_RS00060 - 3-dehydroquinate synthase II, at 15,336 to 16,421
_RS00060
MMP_RS00065: MMP_RS00065 - geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase, at 16,803 to 17,573
_RS00065
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 14.345 kb on - strand, within MMP_RS00055 at 14.420 kb on - strand, within MMP_RS00055 at 14.444 kb on - strand, within MMP_RS00055 at 14.448 kb on - strand, within MMP_RS00055 at 14.575 kb on - strand, within MMP_RS00055 at 14.576 kb on + strand, within MMP_RS00055 at 14.576 kb on + strand, within MMP_RS00055 at 14.576 kb on + strand, within MMP_RS00055 at 14.626 kb on + strand, within MMP_RS00055 at 14.742 kb on - strand, within MMP_RS00055 at 14.801 kb on + strand, within MMP_RS00055 at 14.801 kb on + strand, within MMP_RS00055 at 14.967 kb on + strand, within MMP_RS00055 at 15.046 kb on - strand, within MMP_RS00055 at 15.047 kb on + strand, within MMP_RS00055 at 15.131 kb on - strand at 15.172 kb on - strand at 15.173 kb on + strand at 15.177 kb on - strand at 15.177 kb on - strand at 15.234 kb on + strand at 15.237 kb on - strand at 15.237 kb on - strand at 15.238 kb on + strand at 15.242 kb on - strand at 15.242 kb on - strand at 15.242 kb on - strand at 15.246 kb on - strand at 15.247 kb on + strand at 15.247 kb on + strand at 15.247 kb on + strand at 15.253 kb on + strand at 15.267 kb on + strand at 15.279 kb on - strand at 15.280 kb on + strand at 15.515 kb on + strand, within MMP_RS00060 at 15.590 kb on + strand, within MMP_RS00060 at 16.082 kb on + strand, within MMP_RS00060 at 16.458 kb on + strand at 16.524 kb on - strand at 16.525 kb on + strand at 16.525 kb on + strand at 16.525 kb on + strand at 16.536 kb on - strand at 16.536 kb on - strand at 16.536 kb on - strand at 16.537 kb on + strand at 16.555 kb on - strand at 16.556 kb on + strand at 16.556 kb on + strand at 16.556 kb on + strand at 16.569 kb on - strand at 16.578 kb on - strand at 16.579 kb on + strand at 16.605 kb on + strand at 16.628 kb on + strand at 16.647 kb on + strand at 16.648 kb on - strand at 16.655 kb on + strand at 16.655 kb on + strand at 16.682 kb on - strand at 16.683 kb on + strand at 16.683 kb on + strand at 16.737 kb on + strand at 16.782 kb on + strand at 16.791 kb on + strand at 16.883 kb on + strand at 17.295 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 14,345 - MMP_RS00055 0.45 -0.1 14,420 - MMP_RS00055 0.50 -0.1 14,444 - MMP_RS00055 0.52 +0.9 14,448 - MMP_RS00055 0.52 +0.6 14,575 - MMP_RS00055 0.60 +0.9 14,576 + MMP_RS00055 0.60 -0.6 14,576 + MMP_RS00055 0.60 +0.4 14,576 + MMP_RS00055 0.60 -0.0 14,626 + MMP_RS00055 0.63 +0.0 14,742 - MMP_RS00055 0.71 +0.6 14,801 + MMP_RS00055 0.74 +0.3 14,801 + MMP_RS00055 0.74 +0.2 14,967 + MMP_RS00055 0.85 +0.4 15,046 - MMP_RS00055 0.90 +0.3 15,047 + MMP_RS00055 0.90 +0.0 15,131 - +0.1 15,172 - -0.1 15,173 + -0.1 15,177 - +0.5 15,177 - +1.0 15,234 + +0.2 15,237 - -0.3 15,237 - +0.2 15,238 + +0.5 15,242 - +0.3 15,242 - +0.5 15,242 - -0.7 15,246 - +0.3 15,247 + +0.1 15,247 + -0.1 15,247 + +0.8 15,253 + -0.2 15,267 + -3.0 15,279 - -2.1 15,280 + -2.1 15,515 + MMP_RS00060 0.16 -0.6 15,590 + MMP_RS00060 0.23 -1.2 16,082 + MMP_RS00060 0.69 -0.7 16,458 + -0.3 16,524 - +0.2 16,525 + +0.2 16,525 + -0.5 16,525 + +0.3 16,536 - +1.1 16,536 - -0.0 16,536 - -0.2 16,537 + -0.6 16,555 - -0.1 16,556 + +0.1 16,556 + -0.4 16,556 + -0.0 16,569 - +0.5 16,578 - -0.3 16,579 + +0.7 16,605 + +0.0 16,628 + -0.4 16,647 + +0.0 16,648 - +1.3 16,655 + -0.3 16,655 + -0.1 16,682 - -0.1 16,683 + +0.1 16,683 + -0.0 16,737 + +0.3 16,782 + -1.8 16,791 + -0.2 16,883 + -1.3 17,295 - -3.0
Or see this region's nucleotide sequence