Strain Fitness in Pantoea sp. MT58 around IAI47_16670

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,527,735	+				+1.2
3,527,735	+				+1.7
3,527,735	+				-0.7
3,527,736	-				-1.8
3,527,805	+				+0.8
3,527,805	+				+2.7
3,527,805	+				+1.8
3,527,806	-				-0.7
3,527,806	-				+0.5
3,527,806	-				+1.1
3,527,834	+				-1.4
3,527,834	+				+1.2
3,527,835	-				-1.8
3,527,847	-				-2.1
3,527,847	-				+0.3
3,527,847	-				+1.6
3,527,847	-				+1.4
3,527,854	+				+0.4
3,527,854	+				+0.7
3,527,861	+				-1.2
3,527,861	+				+2.0
3,527,861	+				+0.5
3,527,871	-				+0.8
3,527,871	-				-0.7
3,528,025	-		IAI47_16665	0.25	-0.9
3,528,035	+		IAI47_16665	0.28	-0.4
3,528,035	+		IAI47_16665	0.28	-3.1
3,528,035	+		IAI47_16665	0.28	+0.8
3,528,036	-		IAI47_16665	0.29	+0.3
3,528,036	-		IAI47_16665	0.29	+1.2
3,528,036	-		IAI47_16665	0.29	+0.1
3,528,036	-		IAI47_16665	0.29	-0.7
3,528,036	-		IAI47_16665	0.29	-0.5
3,528,036	-		IAI47_16665	0.29	-3.6
3,528,036	-		IAI47_16665	0.29	+2.1
3,528,069	+		IAI47_16665	0.38	-0.4
3,528,069	+		IAI47_16665	0.38	+1.1
3,528,070	-		IAI47_16665	0.39	-1.5
3,528,070	-		IAI47_16665	0.39	-0.5
3,528,070	-		IAI47_16665	0.39	+0.3
3,528,070	-				+1.6
3,528,071	+		IAI47_16665	0.39	-0.5
3,528,071	+		IAI47_16665	0.39	+2.1
3,528,071	+		IAI47_16665	0.39	-1.2
3,528,071	+		IAI47_16665	0.39	+1.4
3,528,071	+		IAI47_16665	0.39	+0.9
3,528,071	+		IAI47_16665	0.39	-1.7
3,528,072	-		IAI47_16665	0.39	+0.4
3,528,072	-		IAI47_16665	0.39	+0.6
3,528,072	-		IAI47_16665	0.39	-1.0
3,528,072	-		IAI47_16665	0.39	+0.6
3,528,072	-		IAI47_16665	0.39	-0.1
3,528,072	-		IAI47_16665	0.39	-0.6
3,528,087	-		IAI47_16665	0.44	+2.0
3,528,087	-		IAI47_16665	0.44	+1.0
3,528,087	-		IAI47_16665	0.44	-0.7
3,528,111	+		IAI47_16665	0.51	-0.4
3,528,112	-		IAI47_16665	0.51	-3.5
3,528,112	-		IAI47_16665	0.51	+1.6
3,528,136	+		IAI47_16665	0.58	-0.8
3,528,144	+		IAI47_16665	0.60	-1.4
3,528,145	-		IAI47_16665	0.61	+0.2
3,528,145	-		IAI47_16665	0.61	+1.2
3,528,145	-		IAI47_16665	0.61	+0.3
3,528,145	-		IAI47_16665	0.61	-1.4
3,528,147	+		IAI47_16665	0.61	-2.9
3,528,147	+		IAI47_16665	0.61	-2.3
3,528,148	-		IAI47_16665	0.61	-1.0
3,528,148	-		IAI47_16665	0.61	-0.5
3,528,194	+		IAI47_16665	0.75	-0.7
3,528,195	-		IAI47_16665	0.75	-0.4
3,528,195	-		IAI47_16665	0.75	-2.2
3,528,195	-		IAI47_16665	0.75	+0.0
3,528,212	+		IAI47_16665	0.80	-0.9
3,528,212	+		IAI47_16665	0.80	-2.5
3,528,212	+		IAI47_16665	0.80	-0.3
3,528,213	-		IAI47_16665	0.80	+0.6
3,528,213	-		IAI47_16665	0.80	-2.4
3,528,213	-		IAI47_16665	0.80	-1.0
3,528,213	-		IAI47_16665	0.80	-0.1
3,528,215	+		IAI47_16665	0.81	+0.3
3,528,215	+		IAI47_16665	0.81	+2.1
3,528,216	-		IAI47_16665	0.81	+1.4
3,528,216	-		IAI47_16665	0.81	-0.9
3,528,218	+		IAI47_16665	0.82	+0.0
3,528,218	+		IAI47_16665	0.82	-1.6
3,528,219	-		IAI47_16665	0.82	+0.9
3,528,219	-		IAI47_16665	0.82	+1.4
3,528,219	-		IAI47_16665	0.82	-0.9
3,528,219	-		IAI47_16665	0.82	+1.6
3,528,261	+				+0.2
3,528,262	-				+2.3
3,528,268	+				-0.7
3,528,358	+				-0.7
3,528,358	+				-1.8
3,528,358	+				-0.4
3,528,401	+				-0.0
3,528,402	-				+0.6
3,528,402	-				-2.8
3,528,434	+				+0.6
3,528,434	+				-0.4
3,528,434	+				-1.7
3,528,434	+				+0.1
3,528,435	-				-0.2
3,528,436	+				-0.1
3,528,437	-				+1.0
3,528,437	-				+2.2
3,528,437	-				-2.2
3,528,449	-				-2.1
3,528,449	-				-0.7
3,528,449	-				-0.2
3,528,449	-				+2.4
3,528,590	+				+0.8
3,528,590	+				+0.8
3,528,591	-				+0.3
3,528,591	-				+0.7
3,528,591	-				+0.0
3,528,609	-		IAI47_16670	0.24	+1.2
3,528,609	-		IAI47_16670	0.24	+1.0
3,528,620	+		IAI47_16670	0.34	+0.5
3,528,620	+		IAI47_16670	0.34	-1.5
3,528,620	+		IAI47_16670	0.34	+0.8
3,528,621	-		IAI47_16670	0.35	+1.8
3,528,621	-		IAI47_16670	0.35	+2.1
3,528,621	-		IAI47_16670	0.35	+1.1
3,528,641	+		IAI47_16670	0.53	-0.7
3,528,641	+		IAI47_16670	0.53	+1.6
3,528,683	+				+1.3
3,528,700	-				+1.2
3,528,702	+				+0.1
3,528,728	+				+0.9
3,528,740	+				-0.0
3,528,740	+				-0.5
3,528,740	+				+1.6
3,528,740	+				-0.2
3,528,741	-				-0.7
3,528,741	-				+1.2
3,528,741	-				+0.5
3,528,741	-				-0.4
3,528,741	-				-2.0
3,528,790	+				-0.8
3,528,790	+				+1.3
3,528,791	-				-1.1
3,528,795	+				-1.7
3,528,796	-				+0.3
3,528,807	+				-0.9
3,528,807	+				-1.3
3,528,808	-				+0.0
3,528,808	-				+0.3
3,528,808	-				-0.2
3,528,808	-				+0.1
3,528,892	-				+2.0
3,528,906	-				+1.0
3,528,936	+		IAI47_16675	0.13	-4.0
3,528,937	-		IAI47_16675	0.13	-0.1
3,528,937	-		IAI47_16675	0.13	-1.8
3,528,976	+		IAI47_16675	0.19	+1.0
3,528,976	+		IAI47_16675	0.19	+2.2
3,528,976	+		IAI47_16675	0.19	+2.4
3,528,976	+		IAI47_16675	0.19	-0.5
3,528,976	+		IAI47_16675	0.19	-1.1
3,528,976	+		IAI47_16675	0.19	+0.3
3,528,976	+		IAI47_16675	0.19	+0.4
3,528,976	+		IAI47_16675	0.19	+0.6
3,528,976	+		IAI47_16675	0.19	+0.3
3,528,976	+		IAI47_16675	0.19	-0.9
3,528,976	+		IAI47_16675	0.19	-0.7
3,528,977	-		IAI47_16675	0.20	-0.5
3,528,977	-		IAI47_16675	0.20	-0.3
3,528,977	-		IAI47_16675	0.20	+0.3
3,528,977	-		IAI47_16675	0.20	+0.9
3,528,977	-		IAI47_16675	0.20	+0.8
3,528,977	-		IAI47_16675	0.20	+3.0
3,528,977	-		IAI47_16675	0.20	+0.1
3,528,977	-		IAI47_16675	0.20	-0.9
3,528,977	-		IAI47_16675	0.20	-0.7
3,529,010	+		IAI47_16675	0.25	+2.4
3,529,010	+		IAI47_16675	0.25	+0.6
3,529,010	+		IAI47_16675	0.25	+0.0
3,529,011	-		IAI47_16675	0.25	+1.6
3,529,033	+		IAI47_16675	0.28	-0.7
3,529,033	+		IAI47_16675	0.28	+0.7
3,529,033	+		IAI47_16675	0.28	+1.2
3,529,033	+		IAI47_16675	0.28	+0.9
3,529,033	+		IAI47_16675	0.28	+0.4
3,529,033	+		IAI47_16675	0.28	-0.1
3,529,034	-		IAI47_16675	0.29	+0.4
3,529,034	-		IAI47_16675	0.29	+0.5
3,529,034	-		IAI47_16675	0.29	+2.6
3,529,054	+		IAI47_16675	0.32	-0.2
3,529,054	+		IAI47_16675	0.32	-1.5
3,529,054	+		IAI47_16675	0.32	-0.8
3,529,054	+		IAI47_16675	0.32	+1.3
3,529,054	+		IAI47_16675	0.32	-0.2
3,529,055	-		IAI47_16675	0.32	-1.1
3,529,055	-		IAI47_16675	0.32	-0.0
3,529,055	-		IAI47_16675	0.32	-0.5
3,529,055	-		IAI47_16675	0.32	+0.6
3,529,055	-		IAI47_16675	0.32	+2.2
3,529,055	-		IAI47_16675	0.32	+2.2
3,529,079	+		IAI47_16675	0.36	-1.2
3,529,080	-		IAI47_16675	0.36	+1.6
3,529,103	-		IAI47_16675	0.40	-2.5
3,529,103	-		IAI47_16675	0.40	+2.9
3,529,103	-		IAI47_16675	0.40	-2.5
3,529,109	+		IAI47_16675	0.40	+0.5
3,529,109	+		IAI47_16675	0.40	+0.4
3,529,110	-		IAI47_16675	0.41	+0.5
3,529,110	-		IAI47_16675	0.41	-0.7
3,529,120	+		IAI47_16675	0.42	-0.4
3,529,120	+		IAI47_16675	0.42	-1.3
3,529,120	+		IAI47_16675	0.42	+1.0
3,529,120	+		IAI47_16675	0.42	-1.7
3,529,120	+		IAI47_16675	0.42	-1.2
3,529,120	+		IAI47_16675	0.42	+2.2
3,529,121	-		IAI47_16675	0.42	-0.2
3,529,121	-		IAI47_16675	0.42	+2.8
3,529,121	-		IAI47_16675	0.42	+1.0
3,529,121	-		IAI47_16675	0.42	+1.0
3,529,121	-		IAI47_16675	0.42	+1.3
3,529,121	-		IAI47_16675	0.42	+0.8
3,529,121	-		IAI47_16675	0.42	+0.3
3,529,122	+		IAI47_16675	0.43	-0.6
3,529,122	+		IAI47_16675	0.43	-1.2
3,529,122	+		IAI47_16675	0.43	+1.3
3,529,122	+		IAI47_16675	0.43	+0.8
3,529,122	+		IAI47_16675	0.43	+1.0
3,529,123	-		IAI47_16675	0.43	+0.4
3,529,123	-		IAI47_16675	0.43	+1.5
3,529,123	-		IAI47_16675	0.43	-0.4
3,529,123	-		IAI47_16675	0.43	+0.0
3,529,123	-		IAI47_16675	0.43	-3.1
3,529,164	+		IAI47_16675	0.49	+0.6
3,529,164	+		IAI47_16675	0.49	+0.4
3,529,164	+		IAI47_16675	0.49	-0.8
3,529,164	+		IAI47_16675	0.49	+0.9
3,529,164	+		IAI47_16675	0.49	-3.7
3,529,164	+		IAI47_16675	0.49	+0.4
3,529,164	+		IAI47_16675	0.49	-0.1
3,529,164	+		IAI47_16675	0.49	+0.8
3,529,164	+		IAI47_16675	0.49	+1.7
3,529,165	-		IAI47_16675	0.49	-1.5
3,529,165	-		IAI47_16675	0.49	+0.0
3,529,165	-		IAI47_16675	0.49	-1.7
3,529,165	-		IAI47_16675	0.49	+1.0
3,529,165	-		IAI47_16675	0.49	-2.5
3,529,165	-		IAI47_16675	0.49	-1.5
3,529,178	+		IAI47_16675	0.51	+0.1
3,529,178	+		IAI47_16675	0.51	-0.0
3,529,178	+		IAI47_16675	0.51	-0.8
3,529,178	+		IAI47_16675	0.51	+0.5
3,529,179	-		IAI47_16675	0.52	-0.2
3,529,179	-		IAI47_16675	0.52	-1.7
3,529,179	-		IAI47_16675	0.52	+0.3
3,529,179	-		IAI47_16675	0.52	-0.4
3,529,179	-		IAI47_16675	0.52	-1.7
3,529,207	+		IAI47_16675	0.56	+0.4
3,529,207	+		IAI47_16675	0.56	+2.6
3,529,207	+		IAI47_16675	0.56	-1.5
3,529,207	+		IAI47_16675	0.56	+0.2
3,529,207	+		IAI47_16675	0.56	-1.1
3,529,207	+		IAI47_16675	0.56	-0.2
3,529,208	-		IAI47_16675	0.56	-0.1
3,529,208	-		IAI47_16675	0.56	-0.6
3,529,208	-		IAI47_16675	0.56	-0.2
3,529,208	-		IAI47_16675	0.56	-3.0
3,529,208	-		IAI47_16675	0.56	+1.0
3,529,364	+		IAI47_16675	0.81	-3.0
3,529,364	+		IAI47_16675	0.81	-0.3
3,529,365	-		IAI47_16675	0.81	-0.1
3,529,365	-		IAI47_16675	0.81	+0.3
3,529,365	-		IAI47_16675	0.81	-1.2
3,529,376	+		IAI47_16675	0.83	+3.0
3,529,376	+		IAI47_16675	0.83	+0.4
3,529,377	-		IAI47_16675	0.83	-0.2
3,529,377	-		IAI47_16675	0.83	-0.8
3,529,377	-		IAI47_16675	0.83	+1.0
3,529,377	-		IAI47_16675	0.83	-0.7
3,529,432	+				-1.7
3,529,432	+				-0.7
3,529,462	+				+0.5
3,529,686	+				-1.5
3,529,686	+				-0.0
3,529,686	+				-2.6
3,529,687	-				-1.2
3,529,687	-				+0.2
3,529,687	-				-0.4
3,529,687	-				-1.0
3,529,687	-				+1.4