Strain Fitness in Pantoea sp. MT58 around IAI47_07555

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,594,766	+		IAI47_07545	0.88	+0.8
1,594,766	+		IAI47_07545	0.88	+0.4
1,594,766	+		IAI47_07545	0.88	+1.0
1,594,766	+		IAI47_07545	0.88	+1.5
1,594,766	+		IAI47_07545	0.88	+1.5
1,594,767	-		IAI47_07545	0.88	-1.0
1,594,767	-		IAI47_07545	0.88	-0.3
1,594,798	+				-2.3
1,594,813	+				-1.3
1,594,813	+				-0.1
1,594,814	-				+1.6
1,594,847	+				-0.8
1,594,847	+				-0.7
1,594,847	+				-0.7
1,594,847	+				+2.0
1,594,848	-				+0.8
1,594,848	-				-0.6
1,594,848	-				-0.0
1,594,848	-				-2.3
1,594,848	-				+0.7
1,594,848	-				-1.4
1,594,848	-				+0.4
1,594,862	+				-2.0
1,594,862	+				+0.9
1,594,862	+				-2.2
1,594,863	-				-1.5
1,594,863	-				+1.5
1,594,863	-				+0.3
1,594,870	+				+3.6
1,594,870	+				+0.4
1,594,870	+				+1.4
1,594,870	+				+0.0
1,594,870	+				+1.4
1,594,870	+				+0.8
1,594,871	-				-0.3
1,594,905	-				-0.3
1,594,908	-				-0.3
1,594,908	-				-0.3
1,594,969	+				-2.2
1,595,015	-				-2.0
1,595,136	-		IAI47_07550	0.43	-2.4
1,595,136	-		IAI47_07550	0.43	-2.6
1,595,198	+				+1.3
1,595,209	+				+0.6
1,595,209	+				-0.3
1,595,209	+				+0.5
1,595,210	-				+0.8
1,595,210	-				+0.3
1,595,259	+				-1.1
1,595,260	-				+0.5
1,595,344	+				+0.1
1,595,345	-				-0.4
1,595,345	-				+0.9
1,595,345	-				-1.9
1,595,351	+				-1.8
1,595,352	-				-1.3
1,595,507	-				+1.3
1,595,507	-				-0.6
1,595,577	-				-2.7
1,595,671	+				-1.7
1,595,671	+				-1.1
1,595,671	+				+0.3
1,595,671	+				-1.7
1,595,671	+				+0.3
1,595,671	+				-2.2
1,595,671	+				-1.8
1,595,672	-				+0.1
1,595,672	-				+0.7
1,595,672	-				-0.3
1,595,672	-				-0.7
1,595,672	-				+1.0
1,595,672	-				+1.3
1,595,694	-				-0.1
1,595,731	+				+2.0
1,595,731	+				+1.1
1,595,731	+				+1.3
1,595,731	+				-0.3
1,595,732	-				-0.7
1,595,732	-				-0.6
1,595,732	-				+0.7
1,595,756	+				-2.2
1,595,757	-				+0.4
1,595,814	-		IAI47_07555	0.14	+1.1
1,595,902	+		IAI47_07555	0.23	-2.5
1,595,913	-		IAI47_07555	0.25	-3.7
1,595,973	-		IAI47_07555	0.31	-0.6
1,596,017	-		IAI47_07555	0.36	-3.7
1,596,057	+		IAI47_07555	0.40	+0.3
1,596,057	+		IAI47_07555	0.40	-3.8
1,596,057	+		IAI47_07555	0.40	-0.3
1,596,057	+		IAI47_07555	0.40	-0.8
1,596,058	-		IAI47_07555	0.40	+0.8
1,596,091	+		IAI47_07555	0.44	+1.4
1,596,091	+		IAI47_07555	0.44	-1.5
1,596,092	-		IAI47_07555	0.44	-0.8
1,596,182	+		IAI47_07555	0.54	+1.6
1,596,183	-		IAI47_07555	0.54	+0.9
1,596,183	-		IAI47_07555	0.54	-1.2
1,596,184	+		IAI47_07555	0.54	+0.9
1,596,185	+		IAI47_07555	0.54	+0.1
1,596,185	+		IAI47_07555	0.54	-1.5
1,596,185	+		IAI47_07555	0.54	-1.5
1,596,186	-		IAI47_07555	0.54	-2.3
1,596,186	-		IAI47_07555	0.54	+0.4
1,596,186	-		IAI47_07555	0.54	+0.7
1,596,186	-		IAI47_07555	0.54	-2.1
1,596,186	-		IAI47_07555	0.54	-2.8
1,596,209	+		IAI47_07555	0.57	+0.3
1,596,209	+		IAI47_07555	0.57	+1.3
1,596,209	+		IAI47_07555	0.57	+0.8
1,596,209	+		IAI47_07555	0.57	+0.6
1,596,284	+		IAI47_07555	0.65	+2.4
1,596,285	-		IAI47_07555	0.65	+0.0
1,596,285	-		IAI47_07555	0.65	-0.9
1,596,457	+		IAI47_07555	0.84	-2.1
1,596,457	+		IAI47_07555	0.84	-0.2
1,596,457	+		IAI47_07555	0.84	-0.7
1,596,457	+		IAI47_07555	0.84	-1.7
1,596,457	+		IAI47_07555	0.84	+0.8
1,596,458	-		IAI47_07555	0.84	-0.7
1,596,458	-		IAI47_07555	0.84	+0.9
1,596,458	-		IAI47_07555	0.84	+2.2
1,596,458	-		IAI47_07555	0.84	-0.5
1,596,458	-		IAI47_07555	0.84	+0.3
1,596,563	+				-3.9
1,596,587	+				-2.7
1,596,587	+				+2.5
1,596,588	-				-1.7
1,596,596	+				+0.3
1,596,606	+				-1.5
1,596,606	+				+1.8
1,596,640	+				-0.1
1,596,640	+				+0.9
1,596,640	+				+0.4
1,596,640	+				-0.9
1,596,640	+				+0.9
1,596,641	-				-1.7
1,596,641	-				-0.2
1,596,641	-				+1.2
1,596,641	-				+0.8
1,596,641	-				-0.1
1,596,695	-				-0.1
1,596,738	+				+1.3
1,596,738	+				-0.5
1,596,738	+				+0.9
1,596,738	+				+0.4
1,596,738	+				+1.3
1,596,739	-				+1.8
1,596,739	-				+2.6
1,596,739	-				-1.1
1,596,739	-				+2.9
1,596,739	-				-0.9
1,596,739	-				-1.9
1,596,739	-				+1.8
1,596,739	-				+0.7
1,596,780	+				+0.5
1,596,803	+		IAI47_07560	0.11	+0.3
1,596,803	+		IAI47_07560	0.11	+1.3
1,596,803	+		IAI47_07560	0.11	+0.3
1,596,803	+		IAI47_07560	0.11	+1.0
1,596,804	-		IAI47_07560	0.11	+0.3
1,596,920	+		IAI47_07560	0.19	+0.7
1,596,920	+		IAI47_07560	0.19	+0.9
1,596,920	+		IAI47_07560	0.19	-1.7
1,596,920	+		IAI47_07560	0.19	-0.8
1,596,920	+		IAI47_07560	0.19	-2.3
1,596,921	-		IAI47_07560	0.19	+0.7
1,596,940	+		IAI47_07560	0.20	-0.4
1,596,940	+		IAI47_07560	0.20	+0.8
1,596,941	-		IAI47_07560	0.20	+0.4
1,597,030	+		IAI47_07560	0.26	-1.6
1,597,031	-		IAI47_07560	0.26	+1.0
1,597,123	+		IAI47_07560	0.32	+1.1
1,597,123	+		IAI47_07560	0.32	-3.4
1,597,124	-		IAI47_07560	0.33	+1.6
1,597,124	-		IAI47_07560	0.33	+0.6
1,597,183	+		IAI47_07560	0.36	+1.0
1,597,183	+		IAI47_07560	0.36	+0.3
1,597,183	+		IAI47_07560	0.36	-0.7
1,597,184	-		IAI47_07560	0.37	+0.1
1,597,184	-		IAI47_07560	0.37	+1.6
1,597,226	+		IAI47_07560	0.39	+0.5
1,597,226	+		IAI47_07560	0.39	+1.1
1,597,226	+		IAI47_07560	0.39	-2.3
1,597,226	+		IAI47_07560	0.39	-1.7
1,597,226	+		IAI47_07560	0.39	+0.9
1,597,226	+		IAI47_07560	0.39	-0.3
1,597,226	+		IAI47_07560	0.39	+1.9
1,597,226	+		IAI47_07560	0.39	-1.1
1,597,227	-		IAI47_07560	0.39	+1.3
1,597,227	-		IAI47_07560	0.39	+1.7
1,597,227	-		IAI47_07560	0.39	+0.6
1,597,227	-		IAI47_07560	0.39	+1.9
1,597,227	-		IAI47_07560	0.39	-0.5
1,597,227	-		IAI47_07560	0.39	+1.9
1,597,255	+		IAI47_07560	0.41	+1.1
1,597,276	+		IAI47_07560	0.43	+1.0
1,597,322	+		IAI47_07560	0.46	-0.4
1,597,323	-		IAI47_07560	0.46	-0.3
1,597,323	-		IAI47_07560	0.46	-1.0
1,597,323	-		IAI47_07560	0.46	-1.5
1,597,323	-		IAI47_07560	0.46	-1.3
1,597,324	+		IAI47_07560	0.46	-0.7
1,597,324	+		IAI47_07560	0.46	+1.3
1,597,342	+		IAI47_07560	0.47	+0.5
1,597,342	+		IAI47_07560	0.47	+2.6
1,597,447	+		IAI47_07560	0.54	+1.8
1,597,447	+		IAI47_07560	0.54	-1.8
1,597,447	+		IAI47_07560	0.54	+0.7
1,597,447	+		IAI47_07560	0.54	+0.3
1,597,447	+		IAI47_07560	0.54	-1.5
1,597,448	-		IAI47_07560	0.54	-1.2
1,597,448	-		IAI47_07560	0.54	+0.4
1,597,448	-		IAI47_07560	0.54	+1.5
1,597,448	-		IAI47_07560	0.54	-1.8
1,597,572	+		IAI47_07560	0.63	-0.2
1,597,573	-		IAI47_07560	0.63	+0.6
1,597,573	-		IAI47_07560	0.63	+0.0
1,597,573	-		IAI47_07560	0.63	+0.7
1,597,573	-		IAI47_07560	0.63	+1.1