Strain Fitness in Pantoea sp. MT58 around IAI47_03535

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03525 and IAI47_03530 overlap by 1 nucleotidesIAI47_03530 and IAI47_03535 are separated by 91 nucleotidesIAI47_03535 and IAI47_03540 are separated by 28 nucleotides IAI47_03525: IAI47_03525 - iron ABC transporter permease, at 735,691 to 736,689 _03525 IAI47_03530: IAI47_03530 - heme ABC transporter ATP-binding protein, at 736,689 to 737,465 _03530 IAI47_03535: IAI47_03535 - CinA family protein, at 737,557 to 738,054 _03535 IAI47_03540: IAI47_03540 - oxidoreductase, at 738,083 to 739,066 _03540 Position (kb) 737 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 736.620 kb on - strandat 736.783 kb on + strand, within IAI47_03530at 736.812 kb on - strand, within IAI47_03530at 736.822 kb on + strand, within IAI47_03530at 736.822 kb on + strand, within IAI47_03530at 736.823 kb on - strand, within IAI47_03530at 737.234 kb on - strand, within IAI47_03530at 737.270 kb on + strand, within IAI47_03530at 737.270 kb on + strand, within IAI47_03530at 737.271 kb on - strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.278 kb on + strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.279 kb on - strand, within IAI47_03530at 737.288 kb on + strand, within IAI47_03530at 737.288 kb on + strand, within IAI47_03530at 737.289 kb on - strand, within IAI47_03530at 737.317 kb on + strand, within IAI47_03530at 737.317 kb on + strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.318 kb on - strand, within IAI47_03530at 737.397 kb on + strandat 737.417 kb on - strandat 737.460 kb on - strandat 737.464 kb on - strandat 737.520 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.522 kb on + strandat 737.523 kb on - strandat 737.555 kb on + strandat 737.555 kb on + strandat 737.555 kb on + strandat 737.556 kb on - strandat 737.556 kb on - strandat 737.598 kb on + strandat 737.598 kb on + strandat 737.599 kb on - strandat 737.603 kb on + strandat 737.603 kb on + strandat 737.603 kb on + strandat 737.604 kb on - strandat 737.604 kb on - strandat 737.644 kb on - strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.661 kb on + strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.662 kb on - strand, within IAI47_03535at 737.697 kb on - strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on + strand, within IAI47_03535at 737.698 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.699 kb on - strand, within IAI47_03535at 737.700 kb on + strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.715 kb on - strand, within IAI47_03535at 737.719 kb on + strand, within IAI47_03535at 737.719 kb on + strand, within IAI47_03535at 737.720 kb on - strand, within IAI47_03535at 737.720 kb on - strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.910 kb on + strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 737.911 kb on - strand, within IAI47_03535at 738.075 kb on + strandat 738.075 kb on + strandat 738.076 kb on - strandat 738.292 kb on + strand, within IAI47_03540at 738.335 kb on - strand, within IAI47_03540at 738.335 kb on - strand, within IAI47_03540at 738.335 kb on - strand, within IAI47_03540at 738.367 kb on + strand, within IAI47_03540at 738.368 kb on - strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.391 kb on + strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.392 kb on - strand, within IAI47_03540at 738.410 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.507 kb on + strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.508 kb on - strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.542 kb on + strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.543 kb on - strand, within IAI47_03540at 738.549 kb on + strand, within IAI47_03540at 738.549 kb on + strand, within IAI47_03540at 738.579 kb on + strand, within IAI47_03540at 738.579 kb on + strand, within IAI47_03540at 738.579 kb on + strand, within IAI47_03540at 738.580 kb on - strand, within IAI47_03540at 738.580 kb on - strand, within IAI47_03540at 738.857 kb on + strand, within IAI47_03540at 738.857 kb on + strand, within IAI47_03540at 738.878 kb on - strand, within IAI47_03540at 738.905 kb on + strand, within IAI47_03540at 738.925 kb on + strand, within IAI47_03540at 738.926 kb on - strand, within IAI47_03540at 738.926 kb on - strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.942 kb on + strand, within IAI47_03540at 738.943 kb on - strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.957 kb on + strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 738.958 kb on - strand, within IAI47_03540at 739.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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736,620 - -0.1
736,783 + IAI47_03530 0.12 +0.6
736,812 - IAI47_03530 0.16 +0.8
736,822 + IAI47_03530 0.17 -0.0
736,822 + IAI47_03530 0.17 +0.7
736,823 - IAI47_03530 0.17 +1.1
737,234 - IAI47_03530 0.70 +0.7
737,270 + IAI47_03530 0.75 -0.2
737,270 + IAI47_03530 0.75 +1.6
737,271 - IAI47_03530 0.75 -0.2
737,278 + IAI47_03530 0.76 -2.2
737,278 + IAI47_03530 0.76 +1.0
737,278 + IAI47_03530 0.76 +0.6
737,278 + IAI47_03530 0.76 +0.6
737,278 + IAI47_03530 0.76 -2.0
737,278 + IAI47_03530 0.76 +0.9
737,279 - IAI47_03530 0.76 -3.7
737,279 - IAI47_03530 0.76 +0.5
737,279 - IAI47_03530 0.76 -0.0
737,279 - IAI47_03530 0.76 -0.5
737,279 - IAI47_03530 0.76 -0.4
737,279 - IAI47_03530 0.76 +1.0
737,279 - IAI47_03530 0.76 -0.3
737,279 - IAI47_03530 0.76 +2.0
737,288 + IAI47_03530 0.77 -0.8
737,288 + IAI47_03530 0.77 -0.4
737,289 - IAI47_03530 0.77 -1.2
737,317 + IAI47_03530 0.81 -0.1
737,317 + IAI47_03530 0.81 -1.1
737,318 - IAI47_03530 0.81 -1.2
737,318 - IAI47_03530 0.81 +0.1
737,318 - IAI47_03530 0.81 -0.1
737,397 + +0.4
737,417 - -1.7
737,460 - -1.5
737,464 - -1.9
737,520 + +1.0
737,522 + +0.4
737,522 + -1.6
737,522 + -2.5
737,522 + +0.3
737,522 + -0.0
737,523 - -0.2
737,555 + -0.5
737,555 + -0.4
737,555 + -0.1
737,556 - -1.3
737,556 - -1.8
737,598 + -2.0
737,598 + -0.4
737,599 - -0.9
737,603 + -2.1
737,603 + -1.9
737,603 + +0.6
737,604 - -0.0
737,604 - -2.0
737,644 - IAI47_03535 0.17 +1.6
737,661 + IAI47_03535 0.21 -1.6
737,661 + IAI47_03535 0.21 +1.6
737,661 + IAI47_03535 0.21 -0.1
737,662 - IAI47_03535 0.21 -3.2
737,662 - IAI47_03535 0.21 -0.3
737,662 - IAI47_03535 0.21 +1.1
737,662 - IAI47_03535 0.21 -1.1
737,697 - IAI47_03535 0.28 -1.2
737,698 + IAI47_03535 0.28 +0.2
737,698 + IAI47_03535 0.28 -1.1
737,698 + IAI47_03535 0.28 -1.6
737,698 + IAI47_03535 0.28 -2.0
737,698 - IAI47_03535 0.28 -1.0
737,699 - IAI47_03535 0.29 -0.3
737,699 - IAI47_03535 0.29 -1.2
737,699 - IAI47_03535 0.29 +0.5
737,699 - IAI47_03535 0.29 -0.4
737,699 - IAI47_03535 0.29 -0.2
737,699 - IAI47_03535 0.29 +0.9
737,699 - IAI47_03535 0.29 -1.2
737,700 + IAI47_03535 0.29 -0.1
737,715 - IAI47_03535 0.32 -0.4
737,715 - IAI47_03535 0.32 +0.5
737,715 - IAI47_03535 0.32 -0.7
737,715 - IAI47_03535 0.32 +1.0
737,719 + IAI47_03535 0.33 +2.0
737,719 + IAI47_03535 0.33 -0.2
737,720 - IAI47_03535 0.33 -2.2
737,720 - IAI47_03535 0.33 +0.6
737,910 + IAI47_03535 0.71 -1.7
737,910 + IAI47_03535 0.71 -1.5
737,910 + IAI47_03535 0.71 -0.1
737,910 + IAI47_03535 0.71 -0.2
737,911 - IAI47_03535 0.71 -2.1
737,911 - IAI47_03535 0.71 +0.0
737,911 - IAI47_03535 0.71 -0.4
737,911 - IAI47_03535 0.71 +0.3
737,911 - IAI47_03535 0.71 -2.7
738,075 + -0.9
738,075 + -1.3
738,076 - -0.5
738,292 + IAI47_03540 0.21 +0.3
738,335 - IAI47_03540 0.26 -0.1
738,335 - IAI47_03540 0.26 -0.5
738,335 - IAI47_03540 0.26 -1.5
738,367 + IAI47_03540 0.29 +0.2
738,368 - IAI47_03540 0.29 -0.6
738,391 + IAI47_03540 0.31 -1.2
738,391 + IAI47_03540 0.31 -1.4
738,391 + IAI47_03540 0.31 +0.4
738,391 + IAI47_03540 0.31 -1.8
738,391 + IAI47_03540 0.31 -1.2
738,392 - IAI47_03540 0.31 +0.2
738,392 - IAI47_03540 0.31 +2.0
738,392 - IAI47_03540 0.31 +3.3
738,392 - IAI47_03540 0.31 +0.6
738,392 - IAI47_03540 0.31 -1.6
738,410 + IAI47_03540 0.33 +0.3
738,507 + IAI47_03540 0.43 +2.0
738,507 + IAI47_03540 0.43 -0.0
738,507 + IAI47_03540 0.43 -0.0
738,507 + IAI47_03540 0.43 -0.4
738,507 + IAI47_03540 0.43 -0.9
738,507 + IAI47_03540 0.43 -2.1
738,508 - IAI47_03540 0.43 -1.0
738,508 - IAI47_03540 0.43 +0.6
738,508 - IAI47_03540 0.43 -2.7
738,508 - IAI47_03540 0.43 +0.6
738,508 - IAI47_03540 0.43 +0.0
738,508 - IAI47_03540 0.43 -0.7
738,542 + IAI47_03540 0.47 -1.6
738,542 + IAI47_03540 0.47 -3.4
738,542 + IAI47_03540 0.47 +1.0
738,542 + IAI47_03540 0.47 -0.4
738,542 + IAI47_03540 0.47 -0.2
738,542 + IAI47_03540 0.47 -0.3
738,542 + IAI47_03540 0.47 -0.7
738,542 + IAI47_03540 0.47 +1.6
738,542 + IAI47_03540 0.47 +0.9
738,542 + IAI47_03540 0.47 -0.8
738,543 - IAI47_03540 0.47 -0.4
738,543 - IAI47_03540 0.47 -0.4
738,543 - IAI47_03540 0.47 +0.0
738,543 - IAI47_03540 0.47 -0.7
738,543 - IAI47_03540 0.47 +1.1
738,549 + IAI47_03540 0.47 +2.1
738,549 + IAI47_03540 0.47 +0.4
738,579 + IAI47_03540 0.50 +1.7
738,579 + IAI47_03540 0.50 -0.0
738,579 + IAI47_03540 0.50 -0.6
738,580 - IAI47_03540 0.51 -1.0
738,580 - IAI47_03540 0.51 +1.0
738,857 + IAI47_03540 0.79 +0.2
738,857 + IAI47_03540 0.79 +1.0
738,878 - IAI47_03540 0.81 -1.0
738,905 + IAI47_03540 0.84 -1.7
738,925 + IAI47_03540 0.86 -0.7
738,926 - IAI47_03540 0.86 +0.4
738,926 - IAI47_03540 0.86 +0.1
738,942 + IAI47_03540 0.87 -0.6
738,942 + IAI47_03540 0.87 +1.0
738,942 + IAI47_03540 0.87 +1.0
738,942 + IAI47_03540 0.87 +2.8
738,942 + IAI47_03540 0.87 -2.9
738,942 + IAI47_03540 0.87 +0.2
738,942 + IAI47_03540 0.87 +1.6
738,943 - IAI47_03540 0.87 +0.8
738,957 + IAI47_03540 0.89 +0.6
738,957 + IAI47_03540 0.89 +0.4
738,957 + IAI47_03540 0.89 -1.2
738,957 + IAI47_03540 0.89 +1.0
738,957 + IAI47_03540 0.89 -1.7
738,957 + IAI47_03540 0.89 -1.2
738,958 - IAI47_03540 0.89 -2.4
738,958 - IAI47_03540 0.89 +0.8
738,958 - IAI47_03540 0.89 +1.5
738,958 - IAI47_03540 0.89 +0.6
738,958 - IAI47_03540 0.89 -2.2
738,958 - IAI47_03540 0.89 +0.4
738,958 - IAI47_03540 0.89 -2.6
739,026 + +1.0

Or see this region's nucleotide sequence