Strain Fitness in Pantoea sp. MT58 around IAI47_02310

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02300 and IAI47_02305 are separated by 24 nucleotidesIAI47_02305 and IAI47_02310 are separated by 3 nucleotidesIAI47_02310 and IAI47_02315 are separated by 3 nucleotidesIAI47_02315 and IAI47_02320 overlap by 4 nucleotides IAI47_02300: IAI47_02300 - DUF494 domain-containing protein, at 476,799 to 477,272 _02300 IAI47_02305: IAI47_02305 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 477,297 to 477,845 _02305 IAI47_02310: IAI47_02310 - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 477,849 to 478,421 _02310 IAI47_02315: IAI47_02315 - shikimate dehydrogenase, at 478,425 to 479,243 _02315 IAI47_02320: IAI47_02320 - DUF1488 domain-containing protein, at 479,240 to 479,497 _02320 Position (kb) 477 478 479Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 476.919 kb on + strand, within IAI47_02300at 476.919 kb on + strand, within IAI47_02300at 476.919 kb on + strand, within IAI47_02300at 476.919 kb on + strand, within IAI47_02300at 476.919 kb on + strand, within IAI47_02300at 476.920 kb on - strand, within IAI47_02300at 476.920 kb on - strand, within IAI47_02300at 477.011 kb on + strand, within IAI47_02300at 477.011 kb on + strand, within IAI47_02300at 477.011 kb on + strand, within IAI47_02300at 477.011 kb on + strand, within IAI47_02300at 477.011 kb on + strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.012 kb on - strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.015 kb on + strand, within IAI47_02300at 477.016 kb on - strand, within IAI47_02300at 477.016 kb on - strand, within IAI47_02300at 477.016 kb on - strand, within IAI47_02300at 477.016 kb on - strand, within IAI47_02300at 477.016 kb on - strand, within IAI47_02300at 477.040 kb on + strand, within IAI47_02300at 477.040 kb on + strand, within IAI47_02300at 477.040 kb on + strand, within IAI47_02300at 477.041 kb on - strand, within IAI47_02300at 477.050 kb on + strand, within IAI47_02300at 477.050 kb on + strand, within IAI47_02300at 477.050 kb on + strand, within IAI47_02300at 477.125 kb on + strand, within IAI47_02300at 477.125 kb on + strand, within IAI47_02300at 477.125 kb on + strand, within IAI47_02300at 477.125 kb on + strand, within IAI47_02300at 477.126 kb on - strand, within IAI47_02300at 477.126 kb on - strand, within IAI47_02300at 477.126 kb on - strand, within IAI47_02300at 477.140 kb on + strand, within IAI47_02300at 477.140 kb on + strand, within IAI47_02300at 477.141 kb on - strand, within IAI47_02300at 477.220 kb on - strand, within IAI47_02300at 477.241 kb on + strandat 477.241 kb on + strandat 477.242 kb on - strandat 477.242 kb on - strandat 477.242 kb on - strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.260 kb on + strandat 477.261 kb on - strandat 477.261 kb on - strandat 477.261 kb on - strandat 477.261 kb on - strandat 477.270 kb on + strandat 477.297 kb on - strandat 477.302 kb on + strandat 477.302 kb on + strandat 477.302 kb on + strandat 477.302 kb on + strandat 477.326 kb on + strandat 477.326 kb on + strandat 477.326 kb on + strandat 477.327 kb on - strandat 477.409 kb on - strand, within IAI47_02305at 477.424 kb on - strand, within IAI47_02305at 477.424 kb on - strand, within IAI47_02305at 477.436 kb on + strand, within IAI47_02305at 477.437 kb on - strand, within IAI47_02305at 477.437 kb on - strand, within IAI47_02305at 477.437 kb on - strand, within IAI47_02305at 477.539 kb on + strand, within IAI47_02305at 477.570 kb on + strand, within IAI47_02305at 477.637 kb on + strand, within IAI47_02305at 477.637 kb on + strand, within IAI47_02305at 477.637 kb on + strand, within IAI47_02305at 477.741 kb on + strand, within IAI47_02305at 477.741 kb on + strand, within IAI47_02305at 477.742 kb on - strand, within IAI47_02305at 477.742 kb on - strand, within IAI47_02305at 477.742 kb on - strand, within IAI47_02305at 477.760 kb on + strand, within IAI47_02305at 477.761 kb on - strand, within IAI47_02305at 477.788 kb on + strand, within IAI47_02305at 477.788 kb on + strand, within IAI47_02305at 477.806 kb on + strandat 477.806 kb on + strandat 477.806 kb on + strandat 477.843 kb on + strandat 477.843 kb on + strandat 477.843 kb on + strandat 477.843 kb on + strandat 478.419 kb on + strandat 479.222 kb on + strandat 479.222 kb on + strandat 479.223 kb on - strandat 479.223 kb on - strandat 479.253 kb on + strandat 479.254 kb on - strandat 479.254 kb on - strandat 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.276 kb on + strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.277 kb on - strand, within IAI47_02320at 479.361 kb on + strand, within IAI47_02320

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
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476,919 + IAI47_02300 0.25 +2.5
476,919 + IAI47_02300 0.25 -0.3
476,919 + IAI47_02300 0.25 +0.7
476,919 + IAI47_02300 0.25 -0.2
476,919 + IAI47_02300 0.25 -0.8
476,920 - IAI47_02300 0.26 -0.5
476,920 - IAI47_02300 0.26 -2.2
477,011 + IAI47_02300 0.45 -2.7
477,011 + IAI47_02300 0.45 -0.2
477,011 + IAI47_02300 0.45 +1.0
477,011 + IAI47_02300 0.45 -1.1
477,011 + IAI47_02300 0.45 -0.2
477,012 - IAI47_02300 0.45 +0.9
477,012 - IAI47_02300 0.45 -0.2
477,012 - IAI47_02300 0.45 +0.2
477,012 - IAI47_02300 0.45 -0.0
477,012 - IAI47_02300 0.45 +1.2
477,012 - IAI47_02300 0.45 +1.2
477,012 - IAI47_02300 0.45 +0.3
477,015 + IAI47_02300 0.46 +0.9
477,015 + IAI47_02300 0.46 -0.5
477,015 + IAI47_02300 0.46 -0.3
477,015 + IAI47_02300 0.46 +2.3
477,015 + IAI47_02300 0.46 +1.3
477,015 + IAI47_02300 0.46 -0.1
477,015 + IAI47_02300 0.46 -0.4
477,016 - IAI47_02300 0.46 +0.2
477,016 - IAI47_02300 0.46 -2.3
477,016 - IAI47_02300 0.46 -2.8
477,016 - IAI47_02300 0.46 -0.4
477,016 - IAI47_02300 0.46 -1.7
477,040 + IAI47_02300 0.51 -1.8
477,040 + IAI47_02300 0.51 +0.6
477,040 + IAI47_02300 0.51 +0.6
477,041 - IAI47_02300 0.51 -0.8
477,050 + IAI47_02300 0.53 +1.4
477,050 + IAI47_02300 0.53 +0.6
477,050 + IAI47_02300 0.53 -0.9
477,125 + IAI47_02300 0.69 -3.1
477,125 + IAI47_02300 0.69 -0.7
477,125 + IAI47_02300 0.69 -0.1
477,125 + IAI47_02300 0.69 -1.4
477,126 - IAI47_02300 0.69 -2.6
477,126 - IAI47_02300 0.69 +0.7
477,126 - IAI47_02300 0.69 -1.4
477,140 + IAI47_02300 0.72 +0.5
477,140 + IAI47_02300 0.72 -0.4
477,141 - IAI47_02300 0.72 +1.0
477,220 - IAI47_02300 0.89 +0.5
477,241 + -0.4
477,241 + -4.0
477,242 - +2.4
477,242 - -0.4
477,242 - +0.9
477,260 + +0.2
477,260 + -0.4
477,260 + -0.7
477,260 + +0.9
477,260 + +0.0
477,260 + +0.7
477,260 + -1.0
477,260 + +0.4
477,260 + -0.4
477,260 + +0.9
477,260 + -0.4
477,261 - +1.6
477,261 - +1.6
477,261 - -0.1
477,261 - -1.8
477,270 + +2.2
477,297 - +0.6
477,302 + -0.1
477,302 + -1.3
477,302 + +0.2
477,302 + -2.0
477,326 + +1.2
477,326 + +0.0
477,326 + -2.1
477,327 - +1.6
477,409 - IAI47_02305 0.20 +0.6
477,424 - IAI47_02305 0.23 -0.7
477,424 - IAI47_02305 0.23 +0.6
477,436 + IAI47_02305 0.25 -0.6
477,437 - IAI47_02305 0.26 +0.6
477,437 - IAI47_02305 0.26 -0.4
477,437 - IAI47_02305 0.26 -1.0
477,539 + IAI47_02305 0.44 +0.6
477,570 + IAI47_02305 0.50 +0.8
477,637 + IAI47_02305 0.62 -1.4
477,637 + IAI47_02305 0.62 -0.8
477,637 + IAI47_02305 0.62 -2.3
477,741 + IAI47_02305 0.81 -3.4
477,741 + IAI47_02305 0.81 -1.5
477,742 - IAI47_02305 0.81 +0.0
477,742 - IAI47_02305 0.81 +1.6
477,742 - IAI47_02305 0.81 -1.0
477,760 + IAI47_02305 0.84 +0.3
477,761 - IAI47_02305 0.85 -0.5
477,788 + IAI47_02305 0.89 +1.8
477,788 + IAI47_02305 0.89 +0.0
477,806 + -1.5
477,806 + +1.9
477,806 + -1.7
477,843 + +0.0
477,843 + -1.4
477,843 + -1.7
477,843 + -0.6
478,419 + -1.1
479,222 + -1.3
479,222 + -1.7
479,223 - -1.4
479,223 - +0.9
479,253 + +1.8
479,254 - +0.6
479,254 - -0.5
479,276 + IAI47_02320 0.14 +0.8
479,276 + IAI47_02320 0.14 -2.2
479,276 + IAI47_02320 0.14 -2.3
479,276 + IAI47_02320 0.14 -1.5
479,276 + IAI47_02320 0.14 +0.2
479,276 + IAI47_02320 0.14 -1.3
479,276 + IAI47_02320 0.14 +1.2
479,276 + IAI47_02320 0.14 +0.0
479,277 - IAI47_02320 0.14 -2.4
479,277 - IAI47_02320 0.14 +1.1
479,277 - IAI47_02320 0.14 -0.0
479,277 - IAI47_02320 0.14 -2.0
479,277 - IAI47_02320 0.14 -1.0
479,277 - IAI47_02320 0.14 -1.0
479,277 - IAI47_02320 0.14 -0.2
479,277 - IAI47_02320 0.14 -1.7
479,277 - IAI47_02320 0.14 -2.0
479,361 + IAI47_02320 0.47 -1.5

Or see this region's nucleotide sequence