Experiment: Carnitine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02885 and AO353_02890 are separated by 95 nucleotides AO353_02890 and AO353_02895 are separated by 56 nucleotides AO353_02895 and AO353_02900 are separated by 71 nucleotides
AO353_02885: AO353_02885 - flagellar biosynthesis protein FlgN, at 612,346 to 612,813
_02885
AO353_02890: AO353_02890 - pilus assembly protein PilZ, at 612,909 to 613,655
_02890
AO353_02895: AO353_02895 - MFS transporter, at 613,712 to 615,100
_02895
AO353_02900: AO353_02900 - glutamate--ammonia ligase, at 615,172 to 616,515
_02900
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.754 kb on + strand, within AO353_02885 at 612.755 kb on - strand, within AO353_02885 at 612.755 kb on - strand, within AO353_02885 at 612.819 kb on + strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.820 kb on - strand at 612.823 kb on + strand at 612.823 kb on + strand at 612.823 kb on + strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.824 kb on - strand at 612.834 kb on + strand at 612.834 kb on + strand at 612.884 kb on + strand at 612.884 kb on + strand at 612.884 kb on + strand at 612.884 kb on + strand at 612.885 kb on - strand at 612.885 kb on - strand at 612.903 kb on + strand at 612.903 kb on + strand at 612.904 kb on - strand at 613.059 kb on + strand, within AO353_02890 at 613.059 kb on + strand, within AO353_02890 at 613.059 kb on + strand, within AO353_02890 at 613.059 kb on + strand, within AO353_02890 at 613.060 kb on - strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.180 kb on + strand, within AO353_02890 at 613.181 kb on - strand, within AO353_02890 at 613.181 kb on - strand, within AO353_02890 at 613.181 kb on - strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.184 kb on + strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.185 kb on - strand, within AO353_02890 at 613.243 kb on - strand, within AO353_02890 at 613.273 kb on - strand, within AO353_02890 at 613.273 kb on - strand, within AO353_02890 at 613.324 kb on + strand, within AO353_02890 at 613.382 kb on + strand, within AO353_02890 at 613.383 kb on - strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.452 kb on + strand, within AO353_02890 at 613.453 kb on - strand, within AO353_02890 at 613.453 kb on - strand, within AO353_02890 at 613.512 kb on + strand, within AO353_02890 at 613.513 kb on - strand, within AO353_02890 at 613.513 kb on - strand, within AO353_02890 at 613.555 kb on + strand, within AO353_02890 at 613.609 kb on - strand at 613.609 kb on - strand at 613.997 kb on + strand, within AO353_02895 at 613.998 kb on - strand, within AO353_02895 at 614.006 kb on + strand, within AO353_02895 at 614.006 kb on + strand, within AO353_02895 at 614.007 kb on - strand, within AO353_02895 at 614.007 kb on - strand, within AO353_02895 at 614.031 kb on + strand, within AO353_02895 at 614.031 kb on + strand, within AO353_02895 at 614.032 kb on - strand, within AO353_02895 at 614.032 kb on - strand, within AO353_02895 at 614.103 kb on + strand, within AO353_02895 at 614.103 kb on + strand, within AO353_02895 at 614.103 kb on + strand, within AO353_02895 at 614.103 kb on + strand, within AO353_02895 at 614.103 kb on + strand, within AO353_02895 at 614.104 kb on - strand, within AO353_02895 at 614.104 kb on - strand, within AO353_02895 at 614.104 kb on - strand, within AO353_02895 at 614.104 kb on - strand, within AO353_02895 at 614.104 kb on - strand, within AO353_02895 at 614.224 kb on + strand, within AO353_02895 at 614.309 kb on + strand, within AO353_02895 at 614.322 kb on + strand, within AO353_02895 at 614.323 kb on - strand, within AO353_02895 at 614.430 kb on + strand, within AO353_02895 at 614.430 kb on + strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.431 kb on - strand, within AO353_02895 at 614.448 kb on + strand, within AO353_02895 at 614.448 kb on + strand, within AO353_02895 at 614.448 kb on + strand, within AO353_02895 at 614.448 kb on + strand, within AO353_02895 at 614.448 kb on + strand, within AO353_02895 at 614.448 kb on + strand, within AO353_02895 at 614.449 kb on - strand, within AO353_02895 at 614.449 kb on - strand, within AO353_02895 at 614.449 kb on - strand, within AO353_02895 at 614.486 kb on - strand, within AO353_02895 at 614.683 kb on - strand, within AO353_02895 at 614.683 kb on - strand, within AO353_02895 at 614.697 kb on + strand at 614.698 kb on - strand, within AO353_02895 at 614.766 kb on + strand, within AO353_02895 at 614.766 kb on + strand, within AO353_02895 at 614.766 kb on + strand, within AO353_02895 at 614.766 kb on + strand, within AO353_02895 at 614.766 kb on + strand, within AO353_02895 at 614.766 kb on + strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.767 kb on - strand, within AO353_02895 at 614.891 kb on - strand, within AO353_02895 at 614.949 kb on + strand, within AO353_02895 at 614.949 kb on + strand, within AO353_02895 at 614.949 kb on + strand, within AO353_02895 at 614.950 kb on - strand, within AO353_02895 at 614.950 kb on - strand, within AO353_02895 at 614.950 kb on - strand, within AO353_02895 at 614.950 kb on - strand, within AO353_02895 at 615.018 kb on + strand at 615.018 kb on + strand at 615.018 kb on + strand at 615.018 kb on + strand at 615.019 kb on - strand at 615.019 kb on - strand at 615.019 kb on - strand at 615.019 kb on - strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.022 kb on + strand at 615.023 kb on - strand at 615.023 kb on - strand at 615.023 kb on - strand at 615.023 kb on - strand at 615.023 kb on - strand at 615.023 kb on - strand at 615.066 kb on + strand at 615.067 kb on - strand at 615.257 kb on + strand at 615.257 kb on + strand at 615.258 kb on - strand at 615.258 kb on - strand at 615.258 kb on - strand at 615.258 kb on - strand at 615.303 kb on + strand at 615.303 kb on + strand at 615.304 kb on - strand at 615.304 kb on - strand at 615.304 kb on - strand at 615.304 kb on - strand at 615.304 kb on - strand at 615.336 kb on + strand, within AO353_02900 at 615.336 kb on + strand, within AO353_02900 at 615.337 kb on - strand, within AO353_02900 at 615.337 kb on - strand, within AO353_02900 at 615.337 kb on - strand, within AO353_02900 at 615.416 kb on + strand, within AO353_02900 at 615.416 kb on + strand, within AO353_02900 at 615.416 kb on + strand, within AO353_02900 at 615.417 kb on - strand, within AO353_02900 at 615.417 kb on - strand, within AO353_02900 at 615.417 kb on - strand, within AO353_02900 at 615.417 kb on - strand, within AO353_02900 at 615.452 kb on + strand, within AO353_02900 at 615.452 kb on + strand, within AO353_02900 at 615.452 kb on + strand, within AO353_02900 at 615.453 kb on - strand, within AO353_02900 at 615.545 kb on + strand, within AO353_02900 at 615.546 kb on - strand, within AO353_02900 at 615.546 kb on - strand, within AO353_02900 at 615.575 kb on + strand, within AO353_02900 at 615.575 kb on + strand, within AO353_02900 at 615.575 kb on + strand, within AO353_02900 at 615.576 kb on - strand, within AO353_02900 at 615.596 kb on + strand, within AO353_02900 at 615.596 kb on + strand, within AO353_02900 at 615.596 kb on + strand, within AO353_02900 at 615.597 kb on - strand, within AO353_02900 at 615.768 kb on + strand, within AO353_02900 at 615.769 kb on - strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.832 kb on + strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.833 kb on - strand, within AO353_02900 at 615.931 kb on - strand, within AO353_02900 at 615.965 kb on + strand, within AO353_02900 at 615.966 kb on - strand, within AO353_02900 at 615.966 kb on - strand, within AO353_02900 at 615.966 kb on - strand, within AO353_02900
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (N) remove 612,754 + AO353_02885 0.87 +0.0 612,755 - AO353_02885 0.87 +0.2 612,755 - AO353_02885 0.87 +0.1 612,819 + +0.0 612,820 - -0.8 612,820 - -1.7 612,820 - +0.4 612,820 - -2.2 612,820 - +1.4 612,823 + +0.7 612,823 + +0.1 612,823 + -0.5 612,824 - +0.6 612,824 - -0.5 612,824 - +0.3 612,824 - +0.6 612,824 - +0.6 612,824 - +0.6 612,824 - -0.4 612,824 - +1.6 612,834 + +0.3 612,834 + +0.9 612,884 + -1.3 612,884 + +0.2 612,884 + +1.3 612,884 + -3.7 612,885 - -0.3 612,885 - +0.1 612,903 + +0.9 612,903 + +1.0 612,904 - +0.1 613,059 + AO353_02890 0.20 -0.3 613,059 + AO353_02890 0.20 -1.3 613,059 + AO353_02890 0.20 +0.1 613,059 + AO353_02890 0.20 -0.9 613,060 - AO353_02890 0.20 -1.0 613,180 + AO353_02890 0.36 +0.4 613,180 + AO353_02890 0.36 +0.1 613,180 + AO353_02890 0.36 +0.0 613,180 + AO353_02890 0.36 -0.0 613,180 + AO353_02890 0.36 +0.1 613,181 - AO353_02890 0.36 +1.0 613,181 - AO353_02890 0.36 +0.7 613,181 - AO353_02890 0.36 -0.2 613,184 + AO353_02890 0.37 -0.4 613,184 + AO353_02890 0.37 -0.7 613,184 + AO353_02890 0.37 -0.1 613,184 + AO353_02890 0.37 -1.8 613,184 + AO353_02890 0.37 +0.3 613,184 + AO353_02890 0.37 -0.1 613,184 + AO353_02890 0.37 +0.3 613,184 + AO353_02890 0.37 +0.3 613,184 + AO353_02890 0.37 -0.2 613,184 + AO353_02890 0.37 +1.6 613,184 + AO353_02890 0.37 -0.1 613,185 - AO353_02890 0.37 +0.3 613,185 - AO353_02890 0.37 -1.3 613,185 - AO353_02890 0.37 -0.9 613,185 - AO353_02890 0.37 -1.8 613,185 - AO353_02890 0.37 +1.3 613,185 - AO353_02890 0.37 +0.3 613,243 - AO353_02890 0.45 -0.7 613,273 - AO353_02890 0.49 +0.5 613,273 - AO353_02890 0.49 -1.0 613,324 + AO353_02890 0.56 -0.7 613,382 + AO353_02890 0.63 +0.6 613,383 - AO353_02890 0.63 +0.8 613,452 + AO353_02890 0.73 +0.2 613,452 + AO353_02890 0.73 +0.0 613,452 + AO353_02890 0.73 -1.6 613,452 + AO353_02890 0.73 -1.3 613,452 + AO353_02890 0.73 +0.2 613,452 + AO353_02890 0.73 +0.7 613,453 - AO353_02890 0.73 -0.8 613,453 - AO353_02890 0.73 -0.1 613,512 + AO353_02890 0.81 -0.6 613,513 - AO353_02890 0.81 -1.2 613,513 - AO353_02890 0.81 +0.6 613,555 + AO353_02890 0.86 -0.4 613,609 - -0.4 613,609 - -0.1 613,997 + AO353_02895 0.21 -1.3 613,998 - AO353_02895 0.21 +0.6 614,006 + AO353_02895 0.21 -0.1 614,006 + AO353_02895 0.21 -0.3 614,007 - AO353_02895 0.21 -0.3 614,007 - AO353_02895 0.21 -1.6 614,031 + AO353_02895 0.23 +0.2 614,031 + AO353_02895 0.23 -2.1 614,032 - AO353_02895 0.23 -1.1 614,032 - AO353_02895 0.23 -0.5 614,103 + AO353_02895 0.28 -1.8 614,103 + AO353_02895 0.28 -1.3 614,103 + AO353_02895 0.28 -0.7 614,103 + AO353_02895 0.28 -0.3 614,103 + AO353_02895 0.28 +0.7 614,104 - AO353_02895 0.28 -1.1 614,104 - AO353_02895 0.28 -1.7 614,104 - AO353_02895 0.28 -2.8 614,104 - AO353_02895 0.28 -0.4 614,104 - AO353_02895 0.28 -1.5 614,224 + AO353_02895 0.37 +0.6 614,309 + AO353_02895 0.43 -3.0 614,322 + AO353_02895 0.44 -1.0 614,323 - AO353_02895 0.44 +0.8 614,430 + AO353_02895 0.52 -1.1 614,430 + AO353_02895 0.52 -0.5 614,431 - AO353_02895 0.52 -0.8 614,431 - AO353_02895 0.52 -1.0 614,431 - AO353_02895 0.52 -0.2 614,431 - AO353_02895 0.52 +0.1 614,431 - AO353_02895 0.52 -2.5 614,431 - AO353_02895 0.52 -1.3 614,431 - AO353_02895 0.52 -0.3 614,431 - AO353_02895 0.52 -0.8 614,431 - AO353_02895 0.52 -1.0 614,448 + AO353_02895 0.53 -0.8 614,448 + AO353_02895 0.53 -2.7 614,448 + AO353_02895 0.53 +0.1 614,448 + AO353_02895 0.53 -1.5 614,448 + AO353_02895 0.53 -1.4 614,448 + AO353_02895 0.53 -1.3 614,449 - AO353_02895 0.53 -0.4 614,449 - AO353_02895 0.53 -1.9 614,449 - AO353_02895 0.53 -1.0 614,486 - AO353_02895 0.56 -1.3 614,683 - AO353_02895 0.70 -0.4 614,683 - AO353_02895 0.70 -0.8 614,697 + +0.9 614,698 - AO353_02895 0.71 -1.3 614,766 + AO353_02895 0.76 -3.3 614,766 + AO353_02895 0.76 -0.9 614,766 + AO353_02895 0.76 -0.3 614,766 + AO353_02895 0.76 +0.6 614,766 + AO353_02895 0.76 +0.9 614,766 + AO353_02895 0.76 -0.9 614,767 - AO353_02895 0.76 +0.1 614,767 - AO353_02895 0.76 +0.9 614,767 - AO353_02895 0.76 +0.1 614,767 - AO353_02895 0.76 -0.7 614,767 - AO353_02895 0.76 -1.7 614,767 - AO353_02895 0.76 -2.3 614,767 - AO353_02895 0.76 -0.7 614,767 - AO353_02895 0.76 +0.3 614,767 - AO353_02895 0.76 -0.6 614,767 - AO353_02895 0.76 -1.3 614,767 - AO353_02895 0.76 -1.4 614,891 - AO353_02895 0.85 -0.2 614,949 + AO353_02895 0.89 -1.9 614,949 + AO353_02895 0.89 -0.0 614,949 + AO353_02895 0.89 -2.6 614,950 - AO353_02895 0.89 -1.2 614,950 - AO353_02895 0.89 +0.1 614,950 - AO353_02895 0.89 -2.4 614,950 - AO353_02895 0.89 -0.8 615,018 + -0.5 615,018 + -2.0 615,018 + +0.5 615,018 + -0.4 615,019 - -1.8 615,019 - -0.9 615,019 - -0.8 615,019 - -1.0 615,022 + +0.3 615,022 + -2.3 615,022 + -1.3 615,022 + -1.0 615,022 + -0.2 615,022 + -2.3 615,022 + -1.8 615,022 + -2.0 615,022 + +0.1 615,023 - -0.1 615,023 - -0.3 615,023 - -1.5 615,023 - -1.8 615,023 - -1.1 615,023 - -1.1 615,066 + -0.9 615,067 - -1.5 615,257 + -0.7 615,257 + -0.7 615,258 - -0.5 615,258 - +0.9 615,258 - +0.2 615,258 - -0.5 615,303 + +0.5 615,303 + +0.1 615,304 - +0.0 615,304 - -0.2 615,304 - -0.8 615,304 - +0.6 615,304 - +0.9 615,336 + AO353_02900 0.12 -0.5 615,336 + AO353_02900 0.12 -0.2 615,337 - AO353_02900 0.12 +0.6 615,337 - AO353_02900 0.12 -0.8 615,337 - AO353_02900 0.12 -0.1 615,416 + AO353_02900 0.18 -0.5 615,416 + AO353_02900 0.18 -0.3 615,416 + AO353_02900 0.18 +0.3 615,417 - AO353_02900 0.18 +0.0 615,417 - AO353_02900 0.18 +0.3 615,417 - AO353_02900 0.18 -0.2 615,417 - AO353_02900 0.18 -1.5 615,452 + AO353_02900 0.21 +1.0 615,452 + AO353_02900 0.21 -0.4 615,452 + AO353_02900 0.21 -2.0 615,453 - AO353_02900 0.21 +1.2 615,545 + AO353_02900 0.28 -0.3 615,546 - AO353_02900 0.28 -0.1 615,546 - AO353_02900 0.28 +0.0 615,575 + AO353_02900 0.30 +2.5 615,575 + AO353_02900 0.30 +0.2 615,575 + AO353_02900 0.30 -0.4 615,576 - AO353_02900 0.30 +1.4 615,596 + AO353_02900 0.32 -0.1 615,596 + AO353_02900 0.32 +0.2 615,596 + AO353_02900 0.32 +0.2 615,597 - AO353_02900 0.32 -0.2 615,768 + AO353_02900 0.44 -0.8 615,769 - AO353_02900 0.44 +0.3 615,832 + AO353_02900 0.49 -0.4 615,832 + AO353_02900 0.49 +0.2 615,832 + AO353_02900 0.49 -0.9 615,832 + AO353_02900 0.49 -1.5 615,832 + AO353_02900 0.49 -0.2 615,832 + AO353_02900 0.49 +0.8 615,832 + AO353_02900 0.49 +0.2 615,832 + AO353_02900 0.49 -0.8 615,832 + AO353_02900 0.49 +0.1 615,833 - AO353_02900 0.49 -0.9 615,833 - AO353_02900 0.49 -0.7 615,833 - AO353_02900 0.49 +0.6 615,833 - AO353_02900 0.49 +0.3 615,833 - AO353_02900 0.49 -1.8 615,833 - AO353_02900 0.49 +0.2 615,833 - AO353_02900 0.49 -1.3 615,931 - AO353_02900 0.56 -0.9 615,965 + AO353_02900 0.59 -0.7 615,966 - AO353_02900 0.59 +0.6 615,966 - AO353_02900 0.59 -1.3 615,966 - AO353_02900 0.59 +0.1
Or see this region's nucleotide sequence