Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_921

Experiment: phosphite 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_921 and Pf6N2E2_922 are separated by 51 nucleotidesPf6N2E2_922 and Pf6N2E2_923 are separated by 78 nucleotides Pf6N2E2_921 - putative nucleoside-diphosphate-sugar epimerase, at 1,085,305 to 1,086,186 _921 Pf6N2E2_922 - FIG00794167: hypothetical protein, at 1,086,238 to 1,086,699 _922 Pf6N2E2_923 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 1,086,778 to 1,087,095 _923 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -2 -1 0 1 2at 1084.372 kb on - strandat 1084.408 kb on - strandat 1084.408 kb on - strandat 1084.459 kb on + strandat 1084.463 kb on - strandat 1084.497 kb on - strandat 1084.497 kb on - strandat 1084.498 kb on + strandat 1084.499 kb on - strandat 1084.513 kb on + strandat 1084.514 kb on - strandat 1084.514 kb on - strandat 1084.514 kb on - strandat 1084.518 kb on + strandat 1084.628 kb on + strandat 1084.632 kb on + strandat 1084.632 kb on + strandat 1084.633 kb on - strandat 1084.633 kb on - strandat 1084.636 kb on + strandat 1084.637 kb on - strandat 1084.801 kb on + strandat 1084.802 kb on - strandat 1084.828 kb on + strandat 1084.914 kb on + strandat 1084.914 kb on + strandat 1084.914 kb on + strandat 1084.928 kb on - strandat 1085.095 kb on + strandat 1085.096 kb on - strandat 1085.096 kb on - strandat 1085.100 kb on - strandat 1085.100 kb on - strandat 1085.116 kb on + strandat 1085.116 kb on + strandat 1085.116 kb on + strandat 1085.116 kb on + strandat 1085.116 kb on + strandat 1085.117 kb on - strandat 1085.117 kb on - strandat 1085.117 kb on - strandat 1085.119 kb on + strandat 1085.120 kb on - strandat 1085.163 kb on + strandat 1085.163 kb on + strandat 1085.163 kb on + strandat 1085.163 kb on + strandat 1085.163 kb on + strandat 1085.163 kb on + strandat 1085.164 kb on - strandat 1085.164 kb on - strandat 1085.164 kb on - strandat 1085.164 kb on - strandat 1085.274 kb on + strandat 1085.274 kb on + strandat 1085.274 kb on + strandat 1085.274 kb on + strandat 1085.274 kb on + strandat 1085.274 kb on + strandat 1085.274 kb on + strandat 1085.275 kb on - strandat 1085.275 kb on - strandat 1085.275 kb on - strandat 1085.275 kb on - strandat 1085.298 kb on + strandat 1085.327 kb on + strandat 1085.376 kb on + strandat 1085.376 kb on + strandat 1085.401 kb on + strand, within Pf6N2E2_921at 1085.401 kb on + strand, within Pf6N2E2_921at 1085.401 kb on + strand, within Pf6N2E2_921at 1085.402 kb on - strand, within Pf6N2E2_921at 1085.487 kb on + strand, within Pf6N2E2_921at 1085.488 kb on - strand, within Pf6N2E2_921at 1085.522 kb on - strand, within Pf6N2E2_921at 1085.566 kb on + strand, within Pf6N2E2_921at 1085.567 kb on - strand, within Pf6N2E2_921at 1085.829 kb on + strand, within Pf6N2E2_921at 1085.889 kb on + strand, within Pf6N2E2_921at 1085.889 kb on + strand, within Pf6N2E2_921at 1085.896 kb on + strand, within Pf6N2E2_921at 1086.009 kb on + strand, within Pf6N2E2_921at 1086.009 kb on + strand, within Pf6N2E2_921at 1086.009 kb on + strand, within Pf6N2E2_921at 1086.009 kb on + strand, within Pf6N2E2_921at 1086.009 kb on + strand, within Pf6N2E2_921at 1086.009 kb on + strand, within Pf6N2E2_921at 1086.025 kb on + strand, within Pf6N2E2_921at 1086.025 kb on + strand, within Pf6N2E2_921at 1086.025 kb on + strand, within Pf6N2E2_921at 1086.047 kb on + strand, within Pf6N2E2_921at 1086.047 kb on + strand, within Pf6N2E2_921at 1086.047 kb on + strand, within Pf6N2E2_921at 1086.076 kb on + strand, within Pf6N2E2_921at 1086.110 kb on + strandat 1086.110 kb on + strandat 1086.110 kb on + strandat 1086.111 kb on - strandat 1086.178 kb on + strandat 1086.178 kb on + strandat 1086.178 kb on + strandat 1086.178 kb on + strandat 1086.219 kb on + strandat 1086.322 kb on + strand, within Pf6N2E2_922at 1086.322 kb on + strand, within Pf6N2E2_922at 1086.364 kb on + strand, within Pf6N2E2_922at 1086.364 kb on + strand, within Pf6N2E2_922at 1086.467 kb on + strand, within Pf6N2E2_922at 1086.467 kb on + strand, within Pf6N2E2_922at 1086.779 kb on + strandat 1086.808 kb on + strandat 1086.808 kb on + strandat 1086.845 kb on + strand, within Pf6N2E2_923at 1086.846 kb on - strand, within Pf6N2E2_923at 1086.855 kb on - strand, within Pf6N2E2_923at 1086.855 kb on - strand, within Pf6N2E2_923at 1087.016 kb on + strand, within Pf6N2E2_923at 1087.025 kb on - strand, within Pf6N2E2_923at 1087.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phosphite 0.25 M
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1,084,372 - -1.7
1,084,408 - +0.5
1,084,408 - -0.2
1,084,459 + +0.9
1,084,463 - +1.0
1,084,497 - +0.3
1,084,497 - +0.2
1,084,498 + -0.5
1,084,499 - -0.9
1,084,513 + +0.9
1,084,514 - -0.1
1,084,514 - +0.3
1,084,514 - +0.9
1,084,518 + -0.6
1,084,628 + -0.1
1,084,632 + +0.3
1,084,632 + +1.9
1,084,633 - -0.2
1,084,633 - +0.6
1,084,636 + +0.2
1,084,637 - -0.2
1,084,801 + -0.6
1,084,802 - +0.9
1,084,828 + -0.1
1,084,914 + -1.6
1,084,914 + +0.6
1,084,914 + -1.2
1,084,928 - +0.4
1,085,095 + -0.8
1,085,096 - +0.5
1,085,096 - +2.2
1,085,100 - +1.1
1,085,100 - +0.8
1,085,116 + -1.0
1,085,116 + +0.0
1,085,116 + +1.6
1,085,116 + +1.2
1,085,116 + +0.8
1,085,117 - -2.0
1,085,117 - +1.5
1,085,117 - -0.2
1,085,119 + +1.6
1,085,120 - +1.6
1,085,163 + +0.1
1,085,163 + -0.1
1,085,163 + -1.0
1,085,163 + +1.9
1,085,163 + +1.0
1,085,163 + -0.7
1,085,164 - -1.8
1,085,164 - +0.3
1,085,164 - -1.8
1,085,164 - +0.0
1,085,274 + -0.1
1,085,274 + +0.3
1,085,274 + +0.4
1,085,274 + -0.4
1,085,274 + -1.5
1,085,274 + -0.5
1,085,274 + +0.8
1,085,275 - -1.4
1,085,275 - +0.4
1,085,275 - -0.2
1,085,275 - +0.5
1,085,298 + -2.2
1,085,327 + -1.3
1,085,376 + -1.5
1,085,376 + -0.8
1,085,401 + Pf6N2E2_921 0.11 +0.6
1,085,401 + Pf6N2E2_921 0.11 -0.9
1,085,401 + Pf6N2E2_921 0.11 +0.7
1,085,402 - Pf6N2E2_921 0.11 -0.4
1,085,487 + Pf6N2E2_921 0.21 -0.4
1,085,488 - Pf6N2E2_921 0.21 +0.6
1,085,522 - Pf6N2E2_921 0.25 +0.2
1,085,566 + Pf6N2E2_921 0.30 +1.3
1,085,567 - Pf6N2E2_921 0.30 +1.4
1,085,829 + Pf6N2E2_921 0.59 +0.2
1,085,889 + Pf6N2E2_921 0.66 -1.1
1,085,889 + Pf6N2E2_921 0.66 +0.8
1,085,896 + Pf6N2E2_921 0.67 +0.9
1,086,009 + Pf6N2E2_921 0.80 +1.2
1,086,009 + Pf6N2E2_921 0.80 +2.2
1,086,009 + Pf6N2E2_921 0.80 +0.1
1,086,009 + Pf6N2E2_921 0.80 +0.2
1,086,009 + Pf6N2E2_921 0.80 +1.0
1,086,009 + Pf6N2E2_921 0.80 +0.5
1,086,025 + Pf6N2E2_921 0.82 -0.0
1,086,025 + Pf6N2E2_921 0.82 +1.2
1,086,025 + Pf6N2E2_921 0.82 +0.6
1,086,047 + Pf6N2E2_921 0.84 -2.0
1,086,047 + Pf6N2E2_921 0.84 +1.0
1,086,047 + Pf6N2E2_921 0.84 +0.4
1,086,076 + Pf6N2E2_921 0.87 -0.1
1,086,110 + -0.2
1,086,110 + +0.2
1,086,110 + -0.3
1,086,111 - -1.4
1,086,178 + +1.0
1,086,178 + +1.2
1,086,178 + +1.4
1,086,178 + +0.7
1,086,219 + +1.5
1,086,322 + Pf6N2E2_922 0.18 +0.6
1,086,322 + Pf6N2E2_922 0.18 +0.7
1,086,364 + Pf6N2E2_922 0.27 -0.6
1,086,364 + Pf6N2E2_922 0.27 -0.5
1,086,467 + Pf6N2E2_922 0.50 +0.0
1,086,467 + Pf6N2E2_922 0.50 +0.5
1,086,779 + +1.4
1,086,808 + -1.4
1,086,808 + -1.3
1,086,845 + Pf6N2E2_923 0.21 +0.8
1,086,846 - Pf6N2E2_923 0.21 +0.9
1,086,855 - Pf6N2E2_923 0.24 -1.5
1,086,855 - Pf6N2E2_923 0.24 +0.7
1,087,016 + Pf6N2E2_923 0.75 -1.6
1,087,025 - Pf6N2E2_923 0.78 +1.8
1,087,118 - +1.1

Or see this region's nucleotide sequence