Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5905

Experiment: phosphite 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5904 and Pf6N2E2_5905 are separated by 950 nucleotidesPf6N2E2_5905 and Pf6N2E2_5906 are separated by 281 nucleotidesPf6N2E2_5906 and Pf6N2E2_5907 are separated by 158 nucleotidesPf6N2E2_5907 and Pf6N2E2_5908 are separated by 26 nucleotides Pf6N2E2_5904 - Sorbitol dehydrogenase (EC 1.1.1.14), at 6,723,927 to 6,724,328 _5904 Pf6N2E2_5905 - Transcriptional regulator of various polyols utilization, AraC family, at 6,725,279 to 6,726,148 _5905 Pf6N2E2_5906 - Flp pilus assembly protein, pilin Flp, at 6,726,430 to 6,726,654 _5906 Pf6N2E2_5907 - Flp pilus assembly protein, pilin Flp, at 6,726,813 to 6,727,007 _5907 Pf6N2E2_5908 - Type IV prepilin peptidase TadV/CpaA, at 6,727,034 to 6,727,564 _5908 Position (kb) 6725 6726 6727Strain fitness (log2 ratio) -2 -1 0 1 2at 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.382 kb on + strandat 6724.383 kb on - strandat 6724.383 kb on - strandat 6724.407 kb on + strandat 6724.408 kb on - strandat 6724.408 kb on - strandat 6724.496 kb on + strandat 6724.558 kb on - strandat 6724.558 kb on - strandat 6724.558 kb on - strandat 6724.595 kb on + strandat 6724.650 kb on + strandat 6724.650 kb on + strandat 6724.650 kb on + strandat 6724.651 kb on - strandat 6724.651 kb on - strandat 6724.708 kb on - strandat 6724.857 kb on + strandat 6724.858 kb on - strandat 6724.858 kb on - strandat 6724.858 kb on - strandat 6724.872 kb on + strandat 6724.872 kb on + strandat 6724.872 kb on + strandat 6724.872 kb on + strandat 6724.873 kb on - strandat 6724.874 kb on + strandat 6724.875 kb on - strandat 6724.956 kb on - strandat 6725.003 kb on + strandat 6725.003 kb on + strandat 6725.003 kb on + strandat 6725.004 kb on - strandat 6725.004 kb on - strandat 6725.004 kb on - strandat 6725.022 kb on + strandat 6725.080 kb on + strandat 6725.080 kb on + strandat 6725.120 kb on + strandat 6725.201 kb on + strandat 6725.221 kb on + strandat 6725.222 kb on - strandat 6725.222 kb on - strandat 6725.228 kb on - strandat 6725.371 kb on - strand, within Pf6N2E2_5905at 6725.406 kb on + strand, within Pf6N2E2_5905at 6725.430 kb on + strand, within Pf6N2E2_5905at 6725.430 kb on + strand, within Pf6N2E2_5905at 6725.430 kb on + strand, within Pf6N2E2_5905at 6725.532 kb on + strand, within Pf6N2E2_5905at 6725.532 kb on + strand, within Pf6N2E2_5905at 6725.533 kb on - strand, within Pf6N2E2_5905at 6725.652 kb on + strand, within Pf6N2E2_5905at 6725.652 kb on + strand, within Pf6N2E2_5905at 6725.652 kb on + strand, within Pf6N2E2_5905at 6725.653 kb on - strand, within Pf6N2E2_5905at 6725.653 kb on - strand, within Pf6N2E2_5905at 6725.844 kb on + strand, within Pf6N2E2_5905at 6725.844 kb on + strand, within Pf6N2E2_5905at 6725.844 kb on + strand, within Pf6N2E2_5905at 6725.844 kb on + strand, within Pf6N2E2_5905at 6725.844 kb on + strand, within Pf6N2E2_5905at 6725.844 kb on + strand, within Pf6N2E2_5905at 6725.845 kb on - strand, within Pf6N2E2_5905at 6725.845 kb on - strand, within Pf6N2E2_5905at 6725.845 kb on - strand, within Pf6N2E2_5905at 6725.927 kb on + strand, within Pf6N2E2_5905at 6726.148 kb on + strandat 6726.149 kb on - strandat 6726.182 kb on - strandat 6726.182 kb on - strandat 6726.182 kb on - strandat 6726.192 kb on - strandat 6726.206 kb on - strandat 6726.206 kb on - strandat 6726.396 kb on - strandat 6726.422 kb on + strandat 6726.422 kb on + strandat 6726.422 kb on + strandat 6726.422 kb on + strandat 6726.422 kb on + strandat 6726.423 kb on - strandat 6726.489 kb on - strand, within Pf6N2E2_5906at 6726.560 kb on + strand, within Pf6N2E2_5906at 6726.560 kb on + strand, within Pf6N2E2_5906at 6726.687 kb on - strandat 6726.700 kb on + strandat 6726.727 kb on + strandat 6726.778 kb on + strandat 6726.778 kb on + strandat 6726.784 kb on - strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.829 kb on + strandat 6726.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phosphite 0.25 M
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6,724,382 + -1.3
6,724,382 + +0.9
6,724,382 + +0.2
6,724,382 + -1.3
6,724,382 + -0.5
6,724,382 + -2.1
6,724,382 + -2.2
6,724,382 + +0.7
6,724,382 + +0.5
6,724,383 - +0.1
6,724,383 - +0.8
6,724,407 + +0.1
6,724,408 - -1.3
6,724,408 - +0.4
6,724,496 + +1.3
6,724,558 - +0.9
6,724,558 - -1.5
6,724,558 - +0.5
6,724,595 + -0.1
6,724,650 + +0.1
6,724,650 + -0.7
6,724,650 + -0.6
6,724,651 - -0.9
6,724,651 - +0.2
6,724,708 - +0.5
6,724,857 + -1.8
6,724,858 - +0.2
6,724,858 - -1.7
6,724,858 - +0.4
6,724,872 + +1.2
6,724,872 + -1.1
6,724,872 + -0.3
6,724,872 + -0.9
6,724,873 - +0.1
6,724,874 + +0.1
6,724,875 - -1.0
6,724,956 - -1.0
6,725,003 + -1.1
6,725,003 + -1.3
6,725,003 + -0.8
6,725,004 - -0.8
6,725,004 - +0.2
6,725,004 - +0.8
6,725,022 + -1.7
6,725,080 + +0.4
6,725,080 + -0.5
6,725,120 + -1.7
6,725,201 + +1.3
6,725,221 + +0.3
6,725,222 - -0.3
6,725,222 - -0.4
6,725,228 - +1.0
6,725,371 - Pf6N2E2_5905 0.11 -2.0
6,725,406 + Pf6N2E2_5905 0.15 -0.2
6,725,430 + Pf6N2E2_5905 0.17 +1.3
6,725,430 + Pf6N2E2_5905 0.17 -1.8
6,725,430 + Pf6N2E2_5905 0.17 -0.1
6,725,532 + Pf6N2E2_5905 0.29 +0.8
6,725,532 + Pf6N2E2_5905 0.29 -1.8
6,725,533 - Pf6N2E2_5905 0.29 -1.2
6,725,652 + Pf6N2E2_5905 0.43 -0.2
6,725,652 + Pf6N2E2_5905 0.43 +0.1
6,725,652 + Pf6N2E2_5905 0.43 -0.9
6,725,653 - Pf6N2E2_5905 0.43 -0.3
6,725,653 - Pf6N2E2_5905 0.43 -2.2
6,725,844 + Pf6N2E2_5905 0.65 -2.1
6,725,844 + Pf6N2E2_5905 0.65 +0.1
6,725,844 + Pf6N2E2_5905 0.65 +0.5
6,725,844 + Pf6N2E2_5905 0.65 -0.0
6,725,844 + Pf6N2E2_5905 0.65 -2.7
6,725,844 + Pf6N2E2_5905 0.65 +2.1
6,725,845 - Pf6N2E2_5905 0.65 -1.3
6,725,845 - Pf6N2E2_5905 0.65 +0.2
6,725,845 - Pf6N2E2_5905 0.65 -1.4
6,725,927 + Pf6N2E2_5905 0.74 +0.4
6,726,148 + +0.2
6,726,149 - +0.4
6,726,182 - +1.2
6,726,182 - +0.7
6,726,182 - +0.1
6,726,192 - -0.6
6,726,206 - -0.1
6,726,206 - +0.0
6,726,396 - -0.8
6,726,422 + +0.1
6,726,422 + -1.3
6,726,422 + +1.1
6,726,422 + +0.7
6,726,422 + +0.3
6,726,423 - +1.3
6,726,489 - Pf6N2E2_5906 0.26 +0.5
6,726,560 + Pf6N2E2_5906 0.58 +1.6
6,726,560 + Pf6N2E2_5906 0.58 -0.0
6,726,687 - -0.6
6,726,700 + +0.4
6,726,727 + -1.2
6,726,778 + -0.1
6,726,778 + -1.0
6,726,784 - +0.7
6,726,829 + -0.3
6,726,829 + +0.4
6,726,829 + -0.2
6,726,829 + -0.4
6,726,829 + +0.2
6,726,830 - -0.2

Or see this region's nucleotide sequence