Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5407

Experiment: phosphite 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5405 and Pf6N2E2_5406 are separated by 59 nucleotidesPf6N2E2_5406 and Pf6N2E2_5407 overlap by 4 nucleotidesPf6N2E2_5407 and Pf6N2E2_5408 are separated by 164 nucleotidesPf6N2E2_5408 and Pf6N2E2_5409 are separated by 43 nucleotides Pf6N2E2_5405 - ABC transporter for D-Alanine, ATPase component (from data), at 6,210,902 to 6,211,666 _5405 Pf6N2E2_5406 - FIG00958224: hypothetical protein, at 6,211,726 to 6,212,208 _5406 Pf6N2E2_5407 - hypothetical protein, at 6,212,205 to 6,212,516 _5407 Pf6N2E2_5408 - Transcriptional regulator, GntR family, at 6,212,681 to 6,213,340 _5408 Pf6N2E2_5409 - Cyanate transport protein CynX, at 6,213,384 to 6,214,688 _5409 Position (kb) 6212 6213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6211.298 kb on + strand, within Pf6N2E2_5405at 6211.298 kb on + strand, within Pf6N2E2_5405at 6211.298 kb on + strand, within Pf6N2E2_5405at 6211.464 kb on + strand, within Pf6N2E2_5405at 6211.464 kb on + strand, within Pf6N2E2_5405at 6211.464 kb on + strand, within Pf6N2E2_5405at 6211.464 kb on + strand, within Pf6N2E2_5405at 6211.465 kb on - strand, within Pf6N2E2_5405at 6211.465 kb on - strand, within Pf6N2E2_5405at 6211.877 kb on - strand, within Pf6N2E2_5406at 6211.934 kb on - strand, within Pf6N2E2_5406at 6211.934 kb on - strand, within Pf6N2E2_5406at 6211.952 kb on - strand, within Pf6N2E2_5406at 6211.952 kb on - strand, within Pf6N2E2_5406at 6212.272 kb on + strand, within Pf6N2E2_5407at 6212.273 kb on - strand, within Pf6N2E2_5407at 6212.273 kb on - strand, within Pf6N2E2_5407at 6212.302 kb on + strand, within Pf6N2E2_5407at 6212.303 kb on - strand, within Pf6N2E2_5407at 6212.303 kb on - strand, within Pf6N2E2_5407at 6212.303 kb on - strand, within Pf6N2E2_5407at 6212.303 kb on - strand, within Pf6N2E2_5407at 6212.332 kb on + strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.333 kb on - strand, within Pf6N2E2_5407at 6212.351 kb on - strand, within Pf6N2E2_5407at 6212.351 kb on - strand, within Pf6N2E2_5407at 6212.351 kb on - strand, within Pf6N2E2_5407at 6212.566 kb on + strandat 6212.604 kb on - strandat 6212.620 kb on - strandat 6212.655 kb on + strandat 6212.656 kb on - strandat 6212.656 kb on - strandat 6212.656 kb on - strandat 6212.680 kb on + strandat 6212.681 kb on - strandat 6212.681 kb on - strandat 6212.689 kb on + strandat 6212.689 kb on + strandat 6212.689 kb on + strandat 6212.819 kb on - strand, within Pf6N2E2_5408at 6212.900 kb on + strand, within Pf6N2E2_5408at 6212.900 kb on + strand, within Pf6N2E2_5408at 6212.900 kb on + strand, within Pf6N2E2_5408at 6212.900 kb on + strand, within Pf6N2E2_5408at 6213.039 kb on + strand, within Pf6N2E2_5408at 6213.039 kb on + strand, within Pf6N2E2_5408at 6213.080 kb on + strand, within Pf6N2E2_5408at 6213.081 kb on - strand, within Pf6N2E2_5408at 6213.081 kb on - strand, within Pf6N2E2_5408at 6213.101 kb on + strand, within Pf6N2E2_5408at 6213.101 kb on + strand, within Pf6N2E2_5408at 6213.101 kb on + strand, within Pf6N2E2_5408at 6213.102 kb on - strand, within Pf6N2E2_5408at 6213.102 kb on - strand, within Pf6N2E2_5408at 6213.102 kb on - strand, within Pf6N2E2_5408at 6213.102 kb on - strand, within Pf6N2E2_5408at 6213.102 kb on - strand, within Pf6N2E2_5408at 6213.102 kb on - strand, within Pf6N2E2_5408at 6213.138 kb on + strand, within Pf6N2E2_5408at 6213.138 kb on + strand, within Pf6N2E2_5408at 6213.174 kb on - strand, within Pf6N2E2_5408at 6213.179 kb on + strand, within Pf6N2E2_5408at 6213.179 kb on + strand, within Pf6N2E2_5408

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Per-strain Table

Position Strand Gene LocusTag Fraction phosphite 0.25 M
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6,211,298 + Pf6N2E2_5405 0.52 -1.3
6,211,298 + Pf6N2E2_5405 0.52 -1.7
6,211,298 + Pf6N2E2_5405 0.52 -0.5
6,211,464 + Pf6N2E2_5405 0.73 +0.1
6,211,464 + Pf6N2E2_5405 0.73 -2.0
6,211,464 + Pf6N2E2_5405 0.73 +0.4
6,211,464 + Pf6N2E2_5405 0.73 -0.5
6,211,465 - Pf6N2E2_5405 0.74 -1.2
6,211,465 - Pf6N2E2_5405 0.74 -0.9
6,211,877 - Pf6N2E2_5406 0.31 -0.4
6,211,934 - Pf6N2E2_5406 0.43 -0.4
6,211,934 - Pf6N2E2_5406 0.43 +1.9
6,211,952 - Pf6N2E2_5406 0.47 -0.8
6,211,952 - Pf6N2E2_5406 0.47 -2.3
6,212,272 + Pf6N2E2_5407 0.21 -1.2
6,212,273 - Pf6N2E2_5407 0.22 +0.5
6,212,273 - Pf6N2E2_5407 0.22 -1.2
6,212,302 + Pf6N2E2_5407 0.31 +1.5
6,212,303 - Pf6N2E2_5407 0.31 +0.2
6,212,303 - Pf6N2E2_5407 0.31 +1.0
6,212,303 - Pf6N2E2_5407 0.31 -0.2
6,212,303 - Pf6N2E2_5407 0.31 -1.0
6,212,332 + Pf6N2E2_5407 0.41 -0.1
6,212,333 - Pf6N2E2_5407 0.41 -1.4
6,212,333 - Pf6N2E2_5407 0.41 +0.7
6,212,333 - Pf6N2E2_5407 0.41 -0.4
6,212,333 - Pf6N2E2_5407 0.41 -0.1
6,212,333 - Pf6N2E2_5407 0.41 -1.1
6,212,333 - Pf6N2E2_5407 0.41 -0.6
6,212,333 - Pf6N2E2_5407 0.41 -1.2
6,212,351 - Pf6N2E2_5407 0.47 -0.1
6,212,351 - Pf6N2E2_5407 0.47 -0.3
6,212,351 - Pf6N2E2_5407 0.47 -0.7
6,212,566 + -0.1
6,212,604 - -0.7
6,212,620 - -0.8
6,212,655 + -0.8
6,212,656 - +0.3
6,212,656 - +1.0
6,212,656 - +0.2
6,212,680 + +0.1
6,212,681 - +2.4
6,212,681 - +0.6
6,212,689 + +1.4
6,212,689 + -0.3
6,212,689 + +0.8
6,212,819 - Pf6N2E2_5408 0.21 -1.0
6,212,900 + Pf6N2E2_5408 0.33 -0.6
6,212,900 + Pf6N2E2_5408 0.33 +0.3
6,212,900 + Pf6N2E2_5408 0.33 -0.9
6,212,900 + Pf6N2E2_5408 0.33 +0.2
6,213,039 + Pf6N2E2_5408 0.54 +0.7
6,213,039 + Pf6N2E2_5408 0.54 -0.5
6,213,080 + Pf6N2E2_5408 0.60 +1.5
6,213,081 - Pf6N2E2_5408 0.61 -1.9
6,213,081 - Pf6N2E2_5408 0.61 -0.3
6,213,101 + Pf6N2E2_5408 0.64 -2.8
6,213,101 + Pf6N2E2_5408 0.64 +0.8
6,213,101 + Pf6N2E2_5408 0.64 -0.7
6,213,102 - Pf6N2E2_5408 0.64 +0.5
6,213,102 - Pf6N2E2_5408 0.64 -1.2
6,213,102 - Pf6N2E2_5408 0.64 -0.1
6,213,102 - Pf6N2E2_5408 0.64 +1.1
6,213,102 - Pf6N2E2_5408 0.64 +0.1
6,213,102 - Pf6N2E2_5408 0.64 -0.6
6,213,138 + Pf6N2E2_5408 0.69 +1.1
6,213,138 + Pf6N2E2_5408 0.69 +1.9
6,213,174 - Pf6N2E2_5408 0.75 -2.1
6,213,179 + Pf6N2E2_5408 0.75 -0.3
6,213,179 + Pf6N2E2_5408 0.75 -0.7

Or see this region's nucleotide sequence