Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4095

Experiment: phosphite 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4094 and Pf6N2E2_4095 are separated by 193 nucleotidesPf6N2E2_4095 and Pf6N2E2_4096 are separated by 88 nucleotides Pf6N2E2_4094 - Radical SAM domain protein, at 4,773,645 to 4,774,703 _4094 Pf6N2E2_4095 - Carbonic anhydrase (EC 4.2.1.1), at 4,774,897 to 4,775,628 _4095 Pf6N2E2_4096 - Sulfate transporter family protein in cluster with carbonic anhydrase, at 4,775,717 to 4,777,243 _4096 Position (kb) 4774 4775 4776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4773.906 kb on + strand, within Pf6N2E2_4094at 4774.002 kb on + strand, within Pf6N2E2_4094at 4774.044 kb on + strand, within Pf6N2E2_4094at 4774.044 kb on + strand, within Pf6N2E2_4094at 4774.053 kb on - strand, within Pf6N2E2_4094at 4774.238 kb on + strand, within Pf6N2E2_4094at 4774.238 kb on + strand, within Pf6N2E2_4094at 4774.239 kb on - strand, within Pf6N2E2_4094at 4774.239 kb on - strand, within Pf6N2E2_4094at 4774.413 kb on + strand, within Pf6N2E2_4094at 4774.413 kb on + strand, within Pf6N2E2_4094at 4774.413 kb on + strand, within Pf6N2E2_4094at 4774.413 kb on + strand, within Pf6N2E2_4094at 4774.414 kb on - strand, within Pf6N2E2_4094at 4774.414 kb on - strand, within Pf6N2E2_4094at 4774.477 kb on - strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.536 kb on + strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.537 kb on - strand, within Pf6N2E2_4094at 4774.647 kb on + strandat 4774.706 kb on - strandat 4774.776 kb on + strandat 4774.776 kb on + strandat 4774.776 kb on + strandat 4774.801 kb on + strandat 4774.802 kb on - strandat 4774.816 kb on - strandat 4774.911 kb on + strandat 4774.912 kb on - strandat 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.980 kb on + strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4774.981 kb on - strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.124 kb on + strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.125 kb on - strand, within Pf6N2E2_4095at 4775.180 kb on - strand, within Pf6N2E2_4095at 4775.180 kb on - strand, within Pf6N2E2_4095at 4775.218 kb on + strand, within Pf6N2E2_4095at 4775.219 kb on - strandat 4775.226 kb on - strand, within Pf6N2E2_4095at 4775.518 kb on + strand, within Pf6N2E2_4095at 4775.518 kb on + strand, within Pf6N2E2_4095at 4775.518 kb on + strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.519 kb on - strand, within Pf6N2E2_4095at 4775.548 kb on + strand, within Pf6N2E2_4095at 4775.548 kb on + strand, within Pf6N2E2_4095at 4775.549 kb on - strand, within Pf6N2E2_4095at 4775.549 kb on - strand, within Pf6N2E2_4095at 4775.549 kb on - strand, within Pf6N2E2_4095at 4775.626 kb on + strandat 4775.627 kb on - strandat 4775.627 kb on - strandat 4775.636 kb on + strandat 4775.730 kb on + strandat 4775.730 kb on + strandat 4775.730 kb on + strandat 4775.731 kb on - strandat 4775.731 kb on - strandat 4775.754 kb on + strandat 4775.754 kb on + strandat 4775.754 kb on + strandat 4775.754 kb on + strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4775.755 kb on - strandat 4776.065 kb on + strand, within Pf6N2E2_4096at 4776.065 kb on + strand, within Pf6N2E2_4096at 4776.066 kb on - strand, within Pf6N2E2_4096at 4776.066 kb on - strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.099 kb on + strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.100 kb on - strand, within Pf6N2E2_4096at 4776.340 kb on - strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.511 kb on + strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.512 kb on - strand, within Pf6N2E2_4096at 4776.562 kb on + strand, within Pf6N2E2_4096at 4776.563 kb on - strand, within Pf6N2E2_4096at 4776.563 kb on - strand, within Pf6N2E2_4096

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Per-strain Table

Position Strand Gene LocusTag Fraction phosphite 0.25 M
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4,773,906 + Pf6N2E2_4094 0.25 -0.3
4,774,002 + Pf6N2E2_4094 0.34 +0.4
4,774,044 + Pf6N2E2_4094 0.38 +1.4
4,774,044 + Pf6N2E2_4094 0.38 +1.1
4,774,053 - Pf6N2E2_4094 0.39 -0.1
4,774,238 + Pf6N2E2_4094 0.56 -0.6
4,774,238 + Pf6N2E2_4094 0.56 -0.0
4,774,239 - Pf6N2E2_4094 0.56 -0.1
4,774,239 - Pf6N2E2_4094 0.56 -0.4
4,774,413 + Pf6N2E2_4094 0.73 +0.3
4,774,413 + Pf6N2E2_4094 0.73 +0.4
4,774,413 + Pf6N2E2_4094 0.73 -0.1
4,774,413 + Pf6N2E2_4094 0.73 +0.1
4,774,414 - Pf6N2E2_4094 0.73 +0.2
4,774,414 - Pf6N2E2_4094 0.73 +0.5
4,774,477 - Pf6N2E2_4094 0.79 -1.4
4,774,536 + Pf6N2E2_4094 0.84 +0.5
4,774,536 + Pf6N2E2_4094 0.84 +1.6
4,774,536 + Pf6N2E2_4094 0.84 +2.1
4,774,536 + Pf6N2E2_4094 0.84 +0.4
4,774,536 + Pf6N2E2_4094 0.84 +1.1
4,774,536 + Pf6N2E2_4094 0.84 +0.6
4,774,536 + Pf6N2E2_4094 0.84 +0.7
4,774,536 + Pf6N2E2_4094 0.84 +0.4
4,774,536 + Pf6N2E2_4094 0.84 -0.3
4,774,537 - Pf6N2E2_4094 0.84 +0.3
4,774,537 - Pf6N2E2_4094 0.84 +1.6
4,774,537 - Pf6N2E2_4094 0.84 +0.1
4,774,537 - Pf6N2E2_4094 0.84 -0.4
4,774,537 - Pf6N2E2_4094 0.84 -0.7
4,774,537 - Pf6N2E2_4094 0.84 +0.3
4,774,537 - Pf6N2E2_4094 0.84 -0.9
4,774,537 - Pf6N2E2_4094 0.84 -1.6
4,774,537 - Pf6N2E2_4094 0.84 +0.6
4,774,647 + -1.3
4,774,706 - +0.5
4,774,776 + -0.3
4,774,776 + +0.0
4,774,776 + +0.0
4,774,801 + +0.0
4,774,802 - -2.0
4,774,816 - -3.0
4,774,911 + -1.9
4,774,912 - -1.7
4,774,980 + Pf6N2E2_4095 0.11 -0.6
4,774,980 + Pf6N2E2_4095 0.11 -1.5
4,774,980 + Pf6N2E2_4095 0.11 -1.2
4,774,980 + Pf6N2E2_4095 0.11 -0.1
4,774,981 - Pf6N2E2_4095 0.11 -0.5
4,774,981 - Pf6N2E2_4095 0.11 -0.3
4,774,981 - Pf6N2E2_4095 0.11 -1.9
4,774,981 - Pf6N2E2_4095 0.11 -1.6
4,774,981 - Pf6N2E2_4095 0.11 -2.7
4,774,981 - Pf6N2E2_4095 0.11 +0.2
4,774,981 - Pf6N2E2_4095 0.11 -0.0
4,775,124 + Pf6N2E2_4095 0.31 -1.8
4,775,124 + Pf6N2E2_4095 0.31 -2.0
4,775,124 + Pf6N2E2_4095 0.31 -2.0
4,775,124 + Pf6N2E2_4095 0.31 -1.1
4,775,124 + Pf6N2E2_4095 0.31 -2.0
4,775,124 + Pf6N2E2_4095 0.31 -1.1
4,775,124 + Pf6N2E2_4095 0.31 -3.6
4,775,125 - Pf6N2E2_4095 0.31 -2.8
4,775,125 - Pf6N2E2_4095 0.31 -0.4
4,775,125 - Pf6N2E2_4095 0.31 -1.7
4,775,125 - Pf6N2E2_4095 0.31 -1.3
4,775,125 - Pf6N2E2_4095 0.31 -1.2
4,775,125 - Pf6N2E2_4095 0.31 -0.9
4,775,125 - Pf6N2E2_4095 0.31 -3.1
4,775,125 - Pf6N2E2_4095 0.31 -3.2
4,775,125 - Pf6N2E2_4095 0.31 -0.2
4,775,125 - Pf6N2E2_4095 0.31 -1.0
4,775,125 - Pf6N2E2_4095 0.31 -2.4
4,775,125 - Pf6N2E2_4095 0.31 -1.5
4,775,180 - Pf6N2E2_4095 0.39 -3.3
4,775,180 - Pf6N2E2_4095 0.39 -1.8
4,775,218 + Pf6N2E2_4095 0.44 -0.6
4,775,219 - +1.4
4,775,226 - Pf6N2E2_4095 0.45 -2.3
4,775,518 + Pf6N2E2_4095 0.85 +1.5
4,775,518 + Pf6N2E2_4095 0.85 +0.8
4,775,518 + Pf6N2E2_4095 0.85 -1.1
4,775,519 - Pf6N2E2_4095 0.85 -2.3
4,775,519 - Pf6N2E2_4095 0.85 +1.4
4,775,519 - Pf6N2E2_4095 0.85 -1.5
4,775,519 - Pf6N2E2_4095 0.85 -2.3
4,775,519 - Pf6N2E2_4095 0.85 +0.8
4,775,548 + Pf6N2E2_4095 0.89 +1.4
4,775,548 + Pf6N2E2_4095 0.89 +1.3
4,775,549 - Pf6N2E2_4095 0.89 -0.9
4,775,549 - Pf6N2E2_4095 0.89 -0.4
4,775,549 - Pf6N2E2_4095 0.89 -2.0
4,775,626 + +0.2
4,775,627 - -1.2
4,775,627 - -0.7
4,775,636 + +0.4
4,775,730 + -0.2
4,775,730 + -3.3
4,775,730 + -1.4
4,775,731 - -0.7
4,775,731 - +0.2
4,775,754 + -3.4
4,775,754 + -2.4
4,775,754 + -3.3
4,775,754 + -1.2
4,775,755 - -0.9
4,775,755 - -1.1
4,775,755 - +0.2
4,775,755 - -0.9
4,775,755 - -1.2
4,776,065 + Pf6N2E2_4096 0.23 -3.3
4,776,065 + Pf6N2E2_4096 0.23 -2.4
4,776,066 - Pf6N2E2_4096 0.23 -1.2
4,776,066 - Pf6N2E2_4096 0.23 -2.6
4,776,099 + Pf6N2E2_4096 0.25 -1.9
4,776,099 + Pf6N2E2_4096 0.25 -2.6
4,776,099 + Pf6N2E2_4096 0.25 -3.4
4,776,099 + Pf6N2E2_4096 0.25 -0.8
4,776,099 + Pf6N2E2_4096 0.25 -1.2
4,776,100 - Pf6N2E2_4096 0.25 -0.4
4,776,100 - Pf6N2E2_4096 0.25 -0.3
4,776,100 - Pf6N2E2_4096 0.25 -0.4
4,776,100 - Pf6N2E2_4096 0.25 -1.1
4,776,340 - Pf6N2E2_4096 0.41 -2.9
4,776,511 + Pf6N2E2_4096 0.52 -3.4
4,776,511 + Pf6N2E2_4096 0.52 -3.1
4,776,511 + Pf6N2E2_4096 0.52 +0.3
4,776,512 - Pf6N2E2_4096 0.52 -4.0
4,776,512 - Pf6N2E2_4096 0.52 -1.1
4,776,512 - Pf6N2E2_4096 0.52 -0.6
4,776,562 + Pf6N2E2_4096 0.55 -0.3
4,776,563 - Pf6N2E2_4096 0.55 -1.8
4,776,563 - Pf6N2E2_4096 0.55 -1.1

Or see this region's nucleotide sequence