Experiment: phosphite 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1508 and Pf6N2E2_1509 are separated by 131 nucleotides Pf6N2E2_1509 and Pf6N2E2_1510 are separated by 86 nucleotides Pf6N2E2_1510 and Pf6N2E2_1511 are separated by 25 nucleotides
Pf6N2E2_1508 - DNA-binding response regulator, at 1,762,683 to 1,763,342
_1508
Pf6N2E2_1509 - FIG00450070: hypothetical protein, at 1,763,474 to 1,763,797
_1509
Pf6N2E2_1510 - FIG00450095: hypothetical protein, at 1,763,884 to 1,764,354
_1510
Pf6N2E2_1511 - Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2), at 1,764,380 to 1,766,560
_1511
Position (kb)
1763
1764
1765 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1763.210 kb on - strand, within Pf6N2E2_1508 at 1763.210 kb on - strand, within Pf6N2E2_1508 at 1763.331 kb on + strand at 1763.387 kb on + strand at 1763.440 kb on - strand at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.742 kb on - strand, within Pf6N2E2_1509 at 1763.957 kb on + strand, within Pf6N2E2_1510 at 1763.958 kb on - strand, within Pf6N2E2_1510 at 1763.958 kb on - strand, within Pf6N2E2_1510 at 1763.983 kb on + strand, within Pf6N2E2_1510 at 1764.001 kb on + strand, within Pf6N2E2_1510 at 1764.002 kb on - strand, within Pf6N2E2_1510 at 1764.002 kb on - strand, within Pf6N2E2_1510 at 1764.002 kb on - strand, within Pf6N2E2_1510 at 1764.013 kb on + strand, within Pf6N2E2_1510 at 1764.014 kb on - strand, within Pf6N2E2_1510 at 1764.076 kb on + strand, within Pf6N2E2_1510 at 1764.076 kb on + strand, within Pf6N2E2_1510 at 1764.077 kb on - strand, within Pf6N2E2_1510 at 1764.079 kb on + strand, within Pf6N2E2_1510 at 1764.079 kb on + strand, within Pf6N2E2_1510 at 1764.080 kb on - strand, within Pf6N2E2_1510 at 1764.130 kb on + strand at 1764.321 kb on + strand at 1764.321 kb on + strand at 1764.322 kb on - strand at 1764.322 kb on - strand at 1764.339 kb on + strand at 1764.340 kb on - strand at 1764.343 kb on + strand at 1764.343 kb on + strand at 1764.343 kb on + strand at 1764.344 kb on - strand at 1764.344 kb on - strand at 1764.353 kb on - strand at 1764.435 kb on + strand at 1764.456 kb on + strand at 1764.608 kb on + strand, within Pf6N2E2_1511 at 1764.608 kb on + strand, within Pf6N2E2_1511 at 1764.608 kb on + strand, within Pf6N2E2_1511 at 1764.609 kb on - strand, within Pf6N2E2_1511 at 1764.609 kb on - strand, within Pf6N2E2_1511 at 1764.609 kb on - strand, within Pf6N2E2_1511 at 1764.609 kb on - strand, within Pf6N2E2_1511 at 1764.674 kb on + strand, within Pf6N2E2_1511 at 1764.674 kb on + strand, within Pf6N2E2_1511 at 1764.674 kb on + strand, within Pf6N2E2_1511 at 1764.675 kb on - strand, within Pf6N2E2_1511 at 1764.675 kb on - strand, within Pf6N2E2_1511 at 1764.935 kb on + strand, within Pf6N2E2_1511 at 1764.936 kb on - strand, within Pf6N2E2_1511 at 1765.146 kb on - strand, within Pf6N2E2_1511 at 1765.149 kb on + strand, within Pf6N2E2_1511 at 1765.149 kb on + strand, within Pf6N2E2_1511 at 1765.150 kb on - strand, within Pf6N2E2_1511 at 1765.150 kb on - strand, within Pf6N2E2_1511 at 1765.150 kb on - strand, within Pf6N2E2_1511 at 1765.179 kb on - strand, within Pf6N2E2_1511 at 1765.179 kb on - strand, within Pf6N2E2_1511 at 1765.273 kb on + strand, within Pf6N2E2_1511 at 1765.274 kb on - strand, within Pf6N2E2_1511
Per-strain Table
Position Strand Gene LocusTag Fraction phosphite 0.25 M remove 1,763,210 - Pf6N2E2_1508 0.80 -1.3 1,763,210 - Pf6N2E2_1508 0.80 +0.2 1,763,331 + -0.1 1,763,387 + +0.2 1,763,440 - +0.6 1,763,508 + Pf6N2E2_1509 0.10 +0.4 1,763,508 + Pf6N2E2_1509 0.10 +0.7 1,763,508 + Pf6N2E2_1509 0.10 +1.2 1,763,509 - Pf6N2E2_1509 0.11 +0.7 1,763,509 - Pf6N2E2_1509 0.11 -1.0 1,763,509 - Pf6N2E2_1509 0.11 +0.0 1,763,509 - Pf6N2E2_1509 0.11 +0.9 1,763,509 - Pf6N2E2_1509 0.11 +0.7 1,763,654 + Pf6N2E2_1509 0.56 +0.3 1,763,654 + Pf6N2E2_1509 0.56 +1.6 1,763,654 + Pf6N2E2_1509 0.56 +0.4 1,763,742 - Pf6N2E2_1509 0.83 +0.3 1,763,957 + Pf6N2E2_1510 0.15 -2.2 1,763,958 - Pf6N2E2_1510 0.16 +0.7 1,763,958 - Pf6N2E2_1510 0.16 +0.5 1,763,983 + Pf6N2E2_1510 0.21 +0.8 1,764,001 + Pf6N2E2_1510 0.25 +0.6 1,764,002 - Pf6N2E2_1510 0.25 +0.5 1,764,002 - Pf6N2E2_1510 0.25 +0.7 1,764,002 - Pf6N2E2_1510 0.25 -0.8 1,764,013 + Pf6N2E2_1510 0.27 -1.2 1,764,014 - Pf6N2E2_1510 0.28 -0.8 1,764,076 + Pf6N2E2_1510 0.41 -0.9 1,764,076 + Pf6N2E2_1510 0.41 -3.5 1,764,077 - Pf6N2E2_1510 0.41 -1.5 1,764,079 + Pf6N2E2_1510 0.41 -0.4 1,764,079 + Pf6N2E2_1510 0.41 -0.2 1,764,080 - Pf6N2E2_1510 0.42 -2.2 1,764,130 + +2.2 1,764,321 + -0.9 1,764,321 + -0.1 1,764,322 - +0.2 1,764,322 - -0.3 1,764,339 + +0.2 1,764,340 - +0.9 1,764,343 + +0.6 1,764,343 + +1.8 1,764,343 + -0.1 1,764,344 - -0.5 1,764,344 - +0.3 1,764,353 - -0.7 1,764,435 + +0.9 1,764,456 + -0.1 1,764,608 + Pf6N2E2_1511 0.10 -0.5 1,764,608 + Pf6N2E2_1511 0.10 +0.6 1,764,608 + Pf6N2E2_1511 0.10 +0.2 1,764,609 - Pf6N2E2_1511 0.10 +0.2 1,764,609 - Pf6N2E2_1511 0.10 +0.3 1,764,609 - Pf6N2E2_1511 0.10 +1.3 1,764,609 - Pf6N2E2_1511 0.10 +1.4 1,764,674 + Pf6N2E2_1511 0.13 +0.1 1,764,674 + Pf6N2E2_1511 0.13 -0.6 1,764,674 + Pf6N2E2_1511 0.13 -0.9 1,764,675 - Pf6N2E2_1511 0.14 -2.0 1,764,675 - Pf6N2E2_1511 0.14 -0.4 1,764,935 + Pf6N2E2_1511 0.25 +0.8 1,764,936 - Pf6N2E2_1511 0.25 +0.9 1,765,146 - Pf6N2E2_1511 0.35 -1.2 1,765,149 + Pf6N2E2_1511 0.35 +0.4 1,765,149 + Pf6N2E2_1511 0.35 +1.2 1,765,150 - Pf6N2E2_1511 0.35 -0.1 1,765,150 - Pf6N2E2_1511 0.35 -1.9 1,765,150 - Pf6N2E2_1511 0.35 -1.6 1,765,179 - Pf6N2E2_1511 0.37 +1.2 1,765,179 - Pf6N2E2_1511 0.37 -0.2 1,765,273 + Pf6N2E2_1511 0.41 +2.2 1,765,274 - Pf6N2E2_1511 0.41 -1.3
Or see this region's nucleotide sequence