Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03680 and MMP_RS03685 are separated by 40 nucleotides MMP_RS03685 and MMP_RS03690 are separated by 92 nucleotides
MMP_RS03680: MMP_RS03680 - hypothetical protein, at 693,345 to 694,367
_RS03680
MMP_RS03685: MMP_RS03685 - Mrp/NBP35 family ATP-binding protein, at 694,408 to 695,277
_RS03685
MMP_RS03690: MMP_RS03690 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 695,370 to 696,470
_RS03690
Position (kb) 694
695
696 Strain fitness (log2 ratio) -2
-1
0
1 at 693.432 kb on - strand at 693.466 kb on - strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.467 kb on + strand, within MMP_RS03680 at 693.717 kb on - strand, within MMP_RS03680 at 693.815 kb on + strand, within MMP_RS03680 at 694.043 kb on - strand, within MMP_RS03680 at 694.048 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.067 kb on + strand, within MMP_RS03680 at 694.276 kb on + strand at 694.437 kb on - strand at 694.559 kb on + strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.597 kb on - strand, within MMP_RS03685 at 694.598 kb on + strand, within MMP_RS03685 at 694.599 kb on - strand, within MMP_RS03685 at 694.606 kb on - strand, within MMP_RS03685 at 694.607 kb on + strand, within MMP_RS03685 at 694.627 kb on - strand, within MMP_RS03685 at 694.742 kb on + strand, within MMP_RS03685 at 694.819 kb on - strand, within MMP_RS03685 at 695.149 kb on - strand, within MMP_RS03685 at 695.172 kb on - strand, within MMP_RS03685 at 695.173 kb on + strand, within MMP_RS03685 at 695.289 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.311 kb on - strand at 695.312 kb on + strand at 695.316 kb on + strand at 695.316 kb on + strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.327 kb on - strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.328 kb on + strand at 695.330 kb on - strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.331 kb on + strand at 695.334 kb on - strand at 695.335 kb on + strand at 695.372 kb on + strand at 695.623 kb on + strand at 695.623 kb on + strand at 695.625 kb on + strand at 695.786 kb on - strand at 695.790 kb on - strand at 695.791 kb on + strand at 695.795 kb on - strand at 695.795 kb on - strand at 695.795 kb on - strand at 695.978 kb on - strand at 695.978 kb on - strand at 695.983 kb on + strand at 696.189 kb on + strand at 696.189 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 693,432 - -0.3 693,466 - MMP_RS03680 0.12 +0.2 693,467 + MMP_RS03680 0.12 -0.1 693,467 + MMP_RS03680 0.12 +0.2 693,467 + MMP_RS03680 0.12 -0.3 693,717 - MMP_RS03680 0.36 -0.6 693,815 + MMP_RS03680 0.46 -0.2 694,043 - MMP_RS03680 0.68 +0.3 694,048 + MMP_RS03680 0.69 -0.1 694,067 + MMP_RS03680 0.71 +0.1 694,067 + MMP_RS03680 0.71 -0.1 694,276 + +0.4 694,437 - -0.5 694,559 + MMP_RS03685 0.17 -1.4 694,597 - MMP_RS03685 0.22 -0.1 694,597 - MMP_RS03685 0.22 -0.5 694,598 + MMP_RS03685 0.22 -0.5 694,599 - MMP_RS03685 0.22 -0.4 694,606 - MMP_RS03685 0.23 -0.1 694,607 + MMP_RS03685 0.23 -0.3 694,627 - MMP_RS03685 0.25 +0.1 694,742 + MMP_RS03685 0.38 -1.1 694,819 - MMP_RS03685 0.47 -0.5 695,149 - MMP_RS03685 0.85 -0.7 695,172 - MMP_RS03685 0.88 -0.5 695,173 + MMP_RS03685 0.88 -1.1 695,289 - -0.5 695,311 - -0.5 695,311 - +0.3 695,311 - -0.0 695,312 + -1.3 695,316 + -0.1 695,316 + -0.3 695,327 - -0.2 695,327 - -0.3 695,327 - -0.1 695,328 + -0.3 695,328 + -0.4 695,328 + -0.2 695,330 - -0.1 695,331 + -0.6 695,331 + -0.5 695,331 + -0.4 695,334 - -0.2 695,335 + -0.1 695,372 + -0.3 695,623 + +0.1 695,623 + -1.8 695,625 + -0.9 695,786 - -2.6 695,790 - -0.2 695,791 + -0.3 695,795 - -1.8 695,795 - -0.9 695,795 - +0.8 695,978 - -1.9 695,978 - +0.8 695,983 + -1.3 696,189 + +0.8 696,189 + -0.0
Or see this region's nucleotide sequence