Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00935

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00925 and MMP_RS00930 are separated by 90 nucleotidesMMP_RS00930 and MMP_RS00935 are separated by 9 nucleotidesMMP_RS00935 and MMP_RS00940 are separated by 0 nucleotidesMMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides MMP_RS00925: MMP_RS00925 - sirohydrochlorin nickelochelatase, at 173,152 to 173,586 _RS00925 MMP_RS00930: MMP_RS00930 - ABC transporter permease, at 173,677 to 174,438 _RS00930 MMP_RS00935: MMP_RS00935 - MATE family efflux transporter, at 174,448 to 175,830 _RS00935 MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799 _RS00940 MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259 _RS00945 Position (kb) 174 175 176Strain fitness (log2 ratio) -2 -1 0 1at 173.449 kb on + strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.656 kb on + strandat 173.705 kb on - strandat 173.713 kb on - strandat 173.788 kb on - strand, within MMP_RS00930at 173.816 kb on - strand, within MMP_RS00930at 173.816 kb on - strand, within MMP_RS00930at 173.817 kb on + strand, within MMP_RS00930at 173.817 kb on + strand, within MMP_RS00930at 173.832 kb on - strand, within MMP_RS00930at 173.834 kb on - strand, within MMP_RS00930at 173.911 kb on - strand, within MMP_RS00930at 174.257 kb on - strand, within MMP_RS00930at 174.450 kb on + strandat 174.486 kb on - strandat 174.504 kb on + strandat 174.504 kb on + strandat 174.526 kb on + strandat 174.589 kb on - strand, within MMP_RS00935at 174.603 kb on - strand, within MMP_RS00935at 174.769 kb on + strand, within MMP_RS00935at 174.797 kb on + strand, within MMP_RS00935at 174.804 kb on - strand, within MMP_RS00935at 174.931 kb on - strand, within MMP_RS00935at 175.267 kb on - strand, within MMP_RS00935at 175.270 kb on - strand, within MMP_RS00935at 175.270 kb on - strand, within MMP_RS00935at 175.274 kb on - strand, within MMP_RS00935at 175.324 kb on + strand, within MMP_RS00935at 175.328 kb on - strand, within MMP_RS00935at 175.328 kb on - strand, within MMP_RS00935at 175.328 kb on - strand, within MMP_RS00935at 175.329 kb on + strand, within MMP_RS00935at 175.329 kb on + strand, within MMP_RS00935at 175.341 kb on - strand, within MMP_RS00935at 175.341 kb on - strand, within MMP_RS00935at 175.341 kb on - strand, within MMP_RS00935at 175.342 kb on + strand, within MMP_RS00935at 175.390 kb on - strand, within MMP_RS00935at 175.391 kb on + strand, within MMP_RS00935at 175.394 kb on + strand, within MMP_RS00935at 175.531 kb on - strand, within MMP_RS00935at 175.552 kb on + strand, within MMP_RS00935at 175.552 kb on + strand, within MMP_RS00935at 175.774 kb on - strandat 176.026 kb on + strand, within MMP_RS00940at 176.028 kb on + strand, within MMP_RS00940at 176.052 kb on - strand, within MMP_RS00940at 176.220 kb on + strand, within MMP_RS00940at 176.292 kb on - strand, within MMP_RS00940at 176.412 kb on - strand, within MMP_RS00940at 176.429 kb on + strand, within MMP_RS00940at 176.435 kb on + strand, within MMP_RS00940at 176.460 kb on - strand, within MMP_RS00940at 176.652 kb on - strand, within MMP_RS00940at 176.656 kb on - strand, within MMP_RS00940at 176.656 kb on - strand, within MMP_RS00940at 176.657 kb on + strand, within MMP_RS00940at 176.743 kb on - strandat 176.749 kb on - strandat 176.750 kb on + strandat 176.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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173,449 + -0.3
173,652 + -0.7
173,652 + -1.8
173,656 + -0.3
173,705 - +0.2
173,713 - -0.3
173,788 - MMP_RS00930 0.15 +0.2
173,816 - MMP_RS00930 0.18 -0.3
173,816 - MMP_RS00930 0.18 +0.0
173,817 + MMP_RS00930 0.18 +0.3
173,817 + MMP_RS00930 0.18 +0.6
173,832 - MMP_RS00930 0.20 -0.4
173,834 - MMP_RS00930 0.21 +0.4
173,911 - MMP_RS00930 0.31 -0.4
174,257 - MMP_RS00930 0.76 -0.2
174,450 + -0.6
174,486 - -0.0
174,504 + +0.2
174,504 + +0.2
174,526 + -0.2
174,589 - MMP_RS00935 0.10 -0.0
174,603 - MMP_RS00935 0.11 -0.4
174,769 + MMP_RS00935 0.23 +0.9
174,797 + MMP_RS00935 0.25 -0.6
174,804 - MMP_RS00935 0.26 -0.3
174,931 - MMP_RS00935 0.35 +0.4
175,267 - MMP_RS00935 0.59 +0.0
175,270 - MMP_RS00935 0.59 +0.1
175,270 - MMP_RS00935 0.59 -0.7
175,274 - MMP_RS00935 0.60 +0.4
175,324 + MMP_RS00935 0.63 -0.7
175,328 - MMP_RS00935 0.64 +0.4
175,328 - MMP_RS00935 0.64 -0.1
175,328 - MMP_RS00935 0.64 -1.7
175,329 + MMP_RS00935 0.64 -0.0
175,329 + MMP_RS00935 0.64 +0.1
175,341 - MMP_RS00935 0.65 +0.5
175,341 - MMP_RS00935 0.65 +0.1
175,341 - MMP_RS00935 0.65 -0.2
175,342 + MMP_RS00935 0.65 +0.1
175,390 - MMP_RS00935 0.68 -0.2
175,391 + MMP_RS00935 0.68 -0.7
175,394 + MMP_RS00935 0.68 -0.1
175,531 - MMP_RS00935 0.78 +0.2
175,552 + MMP_RS00935 0.80 -0.3
175,552 + MMP_RS00935 0.80 -0.4
175,774 - -0.1
176,026 + MMP_RS00940 0.20 -0.2
176,028 + MMP_RS00940 0.20 +0.4
176,052 - MMP_RS00940 0.23 -0.2
176,220 + MMP_RS00940 0.40 +0.3
176,292 - MMP_RS00940 0.48 -0.4
176,412 - MMP_RS00940 0.60 -0.3
176,429 + MMP_RS00940 0.62 +0.4
176,435 + MMP_RS00940 0.62 +0.2
176,460 - MMP_RS00940 0.65 +0.5
176,652 - MMP_RS00940 0.85 +0.7
176,656 - MMP_RS00940 0.85 +0.1
176,656 - MMP_RS00940 0.85 +0.2
176,657 + MMP_RS00940 0.85 +0.3
176,743 - +0.6
176,749 - +0.3
176,750 + -0.2
176,757 - -0.3

Or see this region's nucleotide sequence