Strain Fitness in Pantoea sp. MT58 around IAI47_17370

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,676,746	+				-2.5
3,676,746	+				-0.8
3,676,746	+				-0.5
3,676,746	+				-1.6
3,676,746	+				+1.0
3,676,746	+				-1.4
3,676,746	+				-2.2
3,676,746	+				-2.0
3,676,746	+				-0.4
3,676,746	+				-0.6
3,676,746	+				+0.1
3,676,746	+				-0.3
3,676,746	+				+1.5
3,676,746	+				-0.8
3,676,747	-				-1.3
3,676,747	-				-1.1
3,676,747	-				+0.4
3,676,747	-				-1.2
3,676,747	-				+2.4
3,676,747	-				-0.8
3,676,747	-				-1.7
3,676,747	-				-0.2
3,676,747	-				-0.4
3,676,747	-				+1.8
3,676,747	-				+0.2
3,676,747	-				+0.1
3,676,747	-				-0.0
3,676,747	-				-2.1
3,676,750	+				+0.2
3,676,750	+				-1.0
3,676,750	+				-0.6
3,676,750	+				-0.2
3,676,750	+				+1.6
3,676,750	+				+1.3
3,676,751	-				-0.3
3,676,751	-				-2.5
3,676,751	-				-1.4
3,676,751	-				-1.1
3,676,751	-				+0.7
3,676,770	+				-1.4
3,676,770	+				-0.2
3,676,771	-				-3.2
3,676,771	-				+1.1
3,676,771	-				+3.3
3,676,783	+				+1.7
3,676,783	+				+1.1
3,676,784	-				-0.1
3,676,784	-				+0.8
3,676,816	+		IAI47_17360	0.16	-0.5
3,676,816	+		IAI47_17360	0.16	-2.6
3,676,817	-		IAI47_17360	0.16	-1.1
3,676,830	+		IAI47_17360	0.19	+0.8
3,676,852	+		IAI47_17360	0.23	-1.6
3,676,852	+		IAI47_17360	0.23	-0.3
3,676,853	-		IAI47_17360	0.24	-2.8
3,676,873	-		IAI47_17360	0.28	-2.5
3,676,873	-		IAI47_17360	0.28	-0.7
3,676,873	-		IAI47_17360	0.28	-0.3
3,676,916	+		IAI47_17360	0.38	-2.5
3,676,916	+		IAI47_17360	0.38	-1.4
3,676,916	+		IAI47_17360	0.38	+0.9
3,676,916	+		IAI47_17360	0.38	-0.7
3,676,938	+		IAI47_17360	0.42	-1.9
3,676,938	+		IAI47_17360	0.42	+2.0
3,676,938	+		IAI47_17360	0.42	-0.0
3,676,938	+		IAI47_17360	0.42	-0.3
3,676,938	+		IAI47_17360	0.42	-4.0
3,676,938	+		IAI47_17360	0.42	+1.3
3,676,938	+		IAI47_17360	0.42	-0.4
3,676,938	-		IAI47_17360	0.42	+1.5
3,676,939	-		IAI47_17360	0.43	+0.9
3,676,939	-		IAI47_17360	0.43	+2.2
3,677,028	+		IAI47_17360	0.62	-0.2
3,677,065	+		IAI47_17360	0.70	+0.8
3,677,065	+		IAI47_17360	0.70	-1.4
3,677,065	+		IAI47_17360	0.70	+0.7
3,677,066	-		IAI47_17360	0.70	-1.7
3,677,066	-		IAI47_17360	0.70	-0.1
3,677,066	-		IAI47_17360	0.70	+0.8
3,677,080	+		IAI47_17360	0.73	+2.3
3,677,080	+		IAI47_17360	0.73	-0.6
3,677,080	+		IAI47_17360	0.73	+1.7
3,677,080	+		IAI47_17360	0.73	+0.4
3,677,080	+		IAI47_17360	0.73	+0.7
3,677,080	+		IAI47_17360	0.73	-0.4
3,677,080	+		IAI47_17360	0.73	+0.7
3,677,080	+		IAI47_17360	0.73	-0.0
3,677,081	-		IAI47_17360	0.74	-0.9
3,677,081	-		IAI47_17360	0.74	-0.1
3,677,081	-		IAI47_17360	0.74	-0.2
3,677,081	-		IAI47_17360	0.74	-1.2
3,677,081	-		IAI47_17360	0.74	-0.4
3,677,081	-		IAI47_17360	0.74	-1.1
3,677,081	-		IAI47_17360	0.74	-2.8
3,677,081	-		IAI47_17360	0.74	+0.0
3,677,081	-		IAI47_17360	0.74	-0.4
3,677,081	-		IAI47_17360	0.74	-1.6
3,677,083	+		IAI47_17360	0.74	-0.7
3,677,084	-		IAI47_17360	0.74	+2.3
3,677,169	+				+1.5
3,677,169	+				+1.6
3,677,185	+				+1.6
3,677,185	+				-0.3
3,677,185	+				-2.4
3,677,185	+				+0.6
3,677,185	+				-0.1
3,677,185	+				-2.8
3,677,185	+				+0.4
3,677,185	+				+0.5
3,677,186	-				+1.3
3,677,186	-				-3.3
3,677,186	-				+3.7
3,677,186	-				+0.6
3,677,186	-				-2.5
3,677,186	-				-2.1
3,677,186	-				+0.9
3,677,186	-				-3.0
3,677,186	-				-0.4
3,677,186	-				+0.5
3,677,186	-				+0.7
3,677,186	-				-3.0
3,677,211	+				-0.2
3,677,212	-				+0.6
3,677,221	+				-0.3
3,677,221	+				-1.3
3,677,221	+				+1.4
3,677,221	+				+0.1
3,677,221	+				+0.1
3,677,221	+				+0.4
3,677,222	-				+0.7
3,677,222	-				-0.8
3,677,222	-				+1.4
3,677,222	-				-1.0
3,677,287	+		IAI47_17365	0.16	+0.3
3,677,287	+		IAI47_17365	0.16	+0.6
3,677,288	-		IAI47_17365	0.16	-3.2
3,677,317	-		IAI47_17365	0.21	+0.2
3,677,376	+		IAI47_17365	0.32	+1.9
3,677,376	+		IAI47_17365	0.32	-0.3
3,677,376	+		IAI47_17365	0.32	-0.2
3,677,376	+		IAI47_17365	0.32	-0.6
3,677,377	-		IAI47_17365	0.32	-2.2
3,677,474	+		IAI47_17365	0.50	-3.3
3,677,474	+		IAI47_17365	0.50	+0.2
3,677,475	-		IAI47_17365	0.50	+2.3
3,677,475	-		IAI47_17365	0.50	+1.3
3,677,494	-		IAI47_17365	0.54	-0.6
3,677,494	-		IAI47_17365	0.54	+0.3
3,677,547	+		IAI47_17365	0.64	-1.3
3,677,547	+		IAI47_17365	0.64	+1.6
3,677,548	-		IAI47_17365	0.64	+0.1
3,677,631	+		IAI47_17365	0.79	-0.2
3,677,632	-		IAI47_17365	0.79	-3.0
3,677,632	-		IAI47_17365	0.79	-0.9
3,677,632	-		IAI47_17365	0.79	-0.3
3,677,632	-		IAI47_17365	0.79	-2.0
3,677,708	-				-2.1
3,677,708	-				+0.8
3,677,736	+				+0.0
3,677,736	+				-1.7
3,677,737	-				-2.8
3,677,737	-				+0.2
3,677,737	-				+1.1
3,677,740	+				+0.2
3,677,740	+				+0.2
3,677,740	+				-0.5
3,677,740	+				+3.0
3,677,740	+				-0.3
3,677,740	+				+0.6
3,677,740	+				+0.4
3,677,740	+				-2.8
3,677,740	+				-1.3
3,677,740	+				-0.0
3,677,740	+				+0.3
3,677,740	+				+0.7
3,677,740	+				-0.0
3,677,740	+				-2.7
3,677,740	+				-0.5
3,677,740	+				-1.7
3,677,740	+				+0.4
3,677,740	+				+0.9
3,677,740	+				+2.5
3,677,741	-				-0.1
3,677,741	-				-0.4
3,677,741	-				-1.0
3,677,741	-				-1.0
3,677,741	-				-1.9
3,677,741	-				+1.6
3,677,741	-				+3.1
3,677,741	-				-0.1
3,677,741	-				-0.4
3,677,741	-				-2.0
3,677,787	+				-0.6
3,677,787	+				-0.3
3,677,787	+				+2.5
3,677,787	+				-2.2
3,677,788	-				-0.3
3,677,788	-				-0.4
3,677,788	-				+0.7
3,677,788	-				+2.9
3,677,788	-				-0.5
3,677,788	-				-0.8
3,677,790	+				-0.8
3,677,790	+				-1.1
3,677,790	+				-1.3
3,677,806	+				+0.3
3,677,807	-				-0.3
3,677,807	-				+0.6
3,677,836	+		IAI47_17370	0.10	+1.8
3,677,836	+		IAI47_17370	0.10	+2.4
3,677,836	+		IAI47_17370	0.10	+0.4
3,677,836	+		IAI47_17370	0.10	-1.1
3,677,836	+		IAI47_17370	0.10	+1.3
3,677,836	+		IAI47_17370	0.10	-1.1
3,677,837	-		IAI47_17370	0.10	+2.0
3,677,837	-		IAI47_17370	0.10	+0.3
3,677,837	-		IAI47_17370	0.10	-3.1
3,677,837	-		IAI47_17370	0.10	+0.2
3,677,837	-		IAI47_17370	0.10	+0.6
3,677,837	-		IAI47_17370	0.10	+1.1
3,677,837	-		IAI47_17370	0.10	+1.1
3,677,855	+		IAI47_17370	0.12	+1.2
3,677,855	+		IAI47_17370	0.12	+2.2
3,677,867	-		IAI47_17370	0.13	-0.7
3,677,867	-		IAI47_17370	0.13	+2.0
3,677,867	-		IAI47_17370	0.13	+0.5
3,677,961	+		IAI47_17370	0.22	+1.0
3,677,962	-		IAI47_17370	0.22	-3.8
3,677,962	-		IAI47_17370	0.22	-0.3
3,677,991	+		IAI47_17370	0.25	-1.0
3,677,991	+		IAI47_17370	0.25	-0.9
3,677,992	-		IAI47_17370	0.25	-1.7
3,678,034	+		IAI47_17370	0.29	+0.7
3,678,034	+		IAI47_17370	0.29	-1.4
3,678,034	+		IAI47_17370	0.29	+1.2
3,678,034	+		IAI47_17370	0.29	+1.0
3,678,035	-		IAI47_17370	0.29	+1.3
3,678,035	-		IAI47_17370	0.29	+0.7
3,678,035	-		IAI47_17370	0.29	-1.5
3,678,035	-		IAI47_17370	0.29	-1.7
3,678,035	-		IAI47_17370	0.29	+1.2
3,678,035	-		IAI47_17370	0.29	+1.7
3,678,035	-		IAI47_17370	0.29	+0.4
3,678,035	-		IAI47_17370	0.29	+0.4
3,678,100	+		IAI47_17370	0.35	+0.3
3,678,122	-		IAI47_17370	0.37	+1.4
3,678,298	+		IAI47_17370	0.53	+0.7
3,678,298	+		IAI47_17370	0.53	-0.8
3,678,298	+		IAI47_17370	0.53	-1.3
3,678,298	+		IAI47_17370	0.53	+2.0
3,678,299	-		IAI47_17370	0.53	+2.5
3,678,299	-		IAI47_17370	0.53	-2.6
3,678,299	-		IAI47_17370	0.53	+0.8
3,678,299	-		IAI47_17370	0.53	+1.4
3,678,396	+		IAI47_17370	0.62	+0.6
3,678,396	+		IAI47_17370	0.62	-1.6
3,678,396	+		IAI47_17370	0.62	+0.9
3,678,396	+		IAI47_17370	0.62	+0.4
3,678,397	-		IAI47_17370	0.62	-1.1
3,678,397	-		IAI47_17370	0.62	+1.5
3,678,397	-		IAI47_17370	0.62	+1.3
3,678,400	+		IAI47_17370	0.62	+1.2
3,678,401	-		IAI47_17370	0.62	+1.0
3,678,401	-		IAI47_17370	0.62	-0.5
3,678,415	-		IAI47_17370	0.64	+0.1
3,678,415	-		IAI47_17370	0.64	+1.5
3,678,446	-		IAI47_17370	0.67	+0.4
3,678,504	+		IAI47_17370	0.72	-1.5
3,678,504	+		IAI47_17370	0.72	+0.7
3,678,504	+		IAI47_17370	0.72	+2.4
3,678,504	+		IAI47_17370	0.72	-0.1
3,678,504	+		IAI47_17370	0.72	-1.8
3,678,504	+		IAI47_17370	0.72	+0.3
3,678,505	-		IAI47_17370	0.72	+2.9
3,678,505	-		IAI47_17370	0.72	-2.4
3,678,505	-		IAI47_17370	0.72	-1.1
3,678,505	-		IAI47_17370	0.72	-1.3
3,678,505	-		IAI47_17370	0.72	+0.4
3,678,505	-		IAI47_17370	0.72	+0.9
3,678,505	-				+1.7
3,678,505	-		IAI47_17370	0.72	-0.3
3,678,505	-		IAI47_17370	0.72	+0.6
3,678,505	-		IAI47_17370	0.72	+1.0
3,678,505	-		IAI47_17370	0.72	+0.9
3,678,505	-		IAI47_17370	0.72	+2.8
3,678,534	+		IAI47_17370	0.75	-2.4
3,678,534	+		IAI47_17370	0.75	+0.3
3,678,534	+		IAI47_17370	0.75	-1.3
3,678,534	+		IAI47_17370	0.75	-0.3
3,678,534	+		IAI47_17370	0.75	-0.9
3,678,534	+		IAI47_17370	0.75	-3.3
3,678,534	+		IAI47_17370	0.75	-0.4
3,678,534	+		IAI47_17370	0.75	-1.0
3,678,534	+		IAI47_17370	0.75	+0.8
3,678,534	+		IAI47_17370	0.75	-0.5
3,678,534	+		IAI47_17370	0.75	+0.6
3,678,534	+		IAI47_17370	0.75	+0.3
3,678,534	+		IAI47_17370	0.75	+0.9
3,678,534	+		IAI47_17370	0.75	+0.5
3,678,534	+		IAI47_17370	0.75	-2.8
3,678,534	+		IAI47_17370	0.75	+0.8
3,678,534	+		IAI47_17370	0.75	-0.6
3,678,534	+		IAI47_17370	0.75	+0.0
3,678,534	+		IAI47_17370	0.75	-1.1
3,678,534	+		IAI47_17370	0.75	+0.4
3,678,534	+		IAI47_17370	0.75	-0.4
3,678,534	+		IAI47_17370	0.75	-2.2
3,678,534	+		IAI47_17370	0.75	-0.7
3,678,534	+		IAI47_17370	0.75	-1.7
3,678,534	+		IAI47_17370	0.75	-1.1
3,678,534	+		IAI47_17370	0.75	-1.9
3,678,534	+		IAI47_17370	0.75	+0.2
3,678,534	+		IAI47_17370	0.75	+0.6
3,678,534	+		IAI47_17370	0.75	-1.7
3,678,534	+		IAI47_17370	0.75	+0.4
3,678,534	+		IAI47_17370	0.75	-2.3
3,678,534	+		IAI47_17370	0.75	+1.8
3,678,534	+		IAI47_17370	0.75	+2.2
3,678,534	+		IAI47_17370	0.75	-3.4
3,678,534	+		IAI47_17370	0.75	+0.1
3,678,534	+		IAI47_17370	0.75	-0.5
3,678,535	-		IAI47_17370	0.75	+0.3
3,678,535	-		IAI47_17370	0.75	-0.3
3,678,535	-		IAI47_17370	0.75	+1.5
3,678,535	-		IAI47_17370	0.75	-0.7
3,678,535	-		IAI47_17370	0.75	-0.8
3,678,535	-		IAI47_17370	0.75	+1.0
3,678,535	-		IAI47_17370	0.75	+0.9
3,678,535	-		IAI47_17370	0.75	+1.1
3,678,535	-		IAI47_17370	0.75	+0.2
3,678,535	-		IAI47_17370	0.75	+1.3
3,678,535	-		IAI47_17370	0.75	-0.0
3,678,535	-		IAI47_17370	0.75	+0.4
3,678,535	-		IAI47_17370	0.75	+2.0
3,678,535	-		IAI47_17370	0.75	-3.5
3,678,535	-		IAI47_17370	0.75	+1.4
3,678,535	-		IAI47_17370	0.75	+0.7
3,678,535	-		IAI47_17370	0.75	-1.0
3,678,535	-		IAI47_17370	0.75	+1.2
3,678,535	-		IAI47_17370	0.75	+1.2
3,678,535	-		IAI47_17370	0.75	-1.3
3,678,535	-		IAI47_17370	0.75	+0.3
3,678,535	-		IAI47_17370	0.75	+1.3
3,678,535	-		IAI47_17370	0.75	-0.0
3,678,535	-		IAI47_17370	0.75	+2.1
3,678,535	-		IAI47_17370	0.75	+0.3
3,678,535	-		IAI47_17370	0.75	+0.2
3,678,535	-		IAI47_17370	0.75	+2.7
3,678,535	-		IAI47_17370	0.75	+0.4
3,678,535	-		IAI47_17370	0.75	-1.6
3,678,535	-		IAI47_17370	0.75	+1.4
3,678,535	-		IAI47_17370	0.75	-0.7
3,678,535	-		IAI47_17370	0.75	-1.1
3,678,544	+		IAI47_17370	0.76	-2.6
3,678,544	+		IAI47_17370	0.76	-2.0
3,678,544	+		IAI47_17370	0.76	-1.8
3,678,592	-		IAI47_17370	0.80	-0.4
3,678,687	-		IAI47_17370	0.89	-0.4
3,678,703	+				-2.1
3,678,704	-				-0.3
3,678,704	-				+1.4
3,678,704	-				+0.0
3,678,725	+				-2.8
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