Strain Fitness in Pantoea sp. MT58 around IAI47_11460

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,424,337	+		IAI47_11455	0.23	+0.0
2,424,338	-		IAI47_11455	0.23	+0.9
2,424,338	-		IAI47_11455	0.23	+0.7
2,424,362	+		IAI47_11455	0.25	+1.1
2,424,375	+		IAI47_11455	0.26	+1.4
2,424,487	+		IAI47_11455	0.35	-0.9
2,424,525	-		IAI47_11455	0.37	+0.6
2,424,525	-		IAI47_11455	0.37	-2.6
2,424,557	+		IAI47_11455	0.40	-2.1
2,424,558	-		IAI47_11455	0.40	-0.2
2,424,558	-		IAI47_11455	0.40	-0.4
2,424,614	-		IAI47_11455	0.44	+1.4
2,424,640	+		IAI47_11455	0.46	-2.1
2,424,640	+		IAI47_11455	0.46	+0.2
2,424,641	-		IAI47_11455	0.46	+0.7
2,424,641	-		IAI47_11455	0.46	+0.8
2,424,641	-		IAI47_11455	0.46	+1.9
2,424,672	+		IAI47_11455	0.49	+0.6
2,424,672	+		IAI47_11455	0.49	+3.9
2,424,672	+		IAI47_11455	0.49	-0.0
2,424,672	+		IAI47_11455	0.49	-0.8
2,424,672	+		IAI47_11455	0.49	+0.8
2,424,672	+		IAI47_11455	0.49	+0.2
2,424,673	-		IAI47_11455	0.49	+0.8
2,424,673	-		IAI47_11455	0.49	-2.0
2,424,674	+		IAI47_11455	0.49	-0.6
2,424,674	+		IAI47_11455	0.49	-1.6
2,424,674	+		IAI47_11455	0.49	+2.0
2,424,674	+		IAI47_11455	0.49	-0.9
2,424,674	+		IAI47_11455	0.49	-0.2
2,424,675	-		IAI47_11455	0.49	+1.6
2,424,675	-		IAI47_11455	0.49	+0.9
2,424,675	-		IAI47_11455	0.49	+0.4
2,424,675	-		IAI47_11455	0.49	-0.9
2,424,675	-		IAI47_11455	0.49	+0.4
2,424,710	+		IAI47_11455	0.52	+0.6
2,424,711	-		IAI47_11455	0.52	+1.5
2,424,724	+		IAI47_11455	0.53	+0.6
2,424,724	+		IAI47_11455	0.53	+1.4
2,424,731	-		IAI47_11455	0.53	-0.8
2,424,731	-		IAI47_11455	0.53	-0.2
2,424,732	+		IAI47_11455	0.53	-1.5
2,424,732	+		IAI47_11455	0.53	-1.1
2,424,733	-		IAI47_11455	0.54	-1.6
2,424,764	-		IAI47_11455	0.56	-1.0
2,424,783	-		IAI47_11455	0.57	-0.3
2,424,793	+		IAI47_11455	0.58	+1.5
2,424,793	+		IAI47_11455	0.58	-0.3
2,424,793	+		IAI47_11455	0.58	-0.5
2,424,793	+		IAI47_11455	0.58	-0.4
2,424,794	-		IAI47_11455	0.58	-1.8
2,424,794	-		IAI47_11455	0.58	-0.6
2,424,819	+		IAI47_11455	0.60	-2.0
2,424,825	+		IAI47_11455	0.61	+0.8
2,424,825	+		IAI47_11455	0.61	-1.5
2,424,825	+		IAI47_11455	0.61	-0.5
2,424,825	+		IAI47_11455	0.61	+0.9
2,424,825	+		IAI47_11455	0.61	+2.9
2,424,825	+		IAI47_11455	0.61	+0.8
2,424,826	-		IAI47_11455	0.61	+0.1
2,424,826	-		IAI47_11455	0.61	+0.2
2,424,826	-		IAI47_11455	0.61	-0.6
2,424,826	-		IAI47_11455	0.61	-0.6
2,424,826	-		IAI47_11455	0.61	-3.0
2,424,826	-		IAI47_11455	0.61	+0.1
2,424,826	-		IAI47_11455	0.61	+1.6
2,424,857	-		IAI47_11455	0.63	-0.2
2,424,857	-		IAI47_11455	0.63	-0.2
2,424,860	-		IAI47_11455	0.63	+0.0
2,424,895	+		IAI47_11455	0.66	-2.2
2,424,896	-		IAI47_11455	0.66	-1.6
2,424,905	-		IAI47_11455	0.67	-0.5
2,424,924	-		IAI47_11455	0.68	+0.4
2,425,026	-		IAI47_11455	0.76	+0.6
2,425,042	+		IAI47_11455	0.77	-0.2
2,425,042	+		IAI47_11455	0.77	-2.1
2,425,042	+		IAI47_11455	0.77	-1.8
2,425,042	+		IAI47_11455	0.77	-3.1
2,425,043	-		IAI47_11455	0.77	-2.6
2,425,043	-		IAI47_11455	0.77	-0.3
2,425,043	-		IAI47_11455	0.77	-2.3
2,425,043	-		IAI47_11455	0.77	-4.4
2,425,043	-		IAI47_11455	0.77	-0.5
2,425,043	-		IAI47_11455	0.77	+0.7
2,425,043	-		IAI47_11455	0.77	+0.0
2,425,044	+		IAI47_11455	0.77	+0.4
2,425,044	+		IAI47_11455	0.77	-1.2
2,425,044	+		IAI47_11455	0.77	-1.2
2,425,044	+		IAI47_11455	0.77	+1.6
2,425,044	+		IAI47_11455	0.77	-0.7
2,425,044	+		IAI47_11455	0.77	-0.1
2,425,044	+		IAI47_11455	0.77	-2.5
2,425,044	+		IAI47_11455	0.77	+2.0
2,425,044	+		IAI47_11455	0.77	-3.2
2,425,044	+		IAI47_11455	0.77	+1.4
2,425,044	+		IAI47_11455	0.77	+1.5
2,425,044	+		IAI47_11455	0.77	+1.6
2,425,044	+		IAI47_11455	0.77	+0.4
2,425,044	+		IAI47_11455	0.77	-1.2
2,425,044	+		IAI47_11455	0.77	+0.4
2,425,044	+		IAI47_11455	0.77	-3.0
2,425,044	+		IAI47_11455	0.77	-0.8
2,425,044	+		IAI47_11455	0.77	+1.5
2,425,044	+		IAI47_11455	0.77	-0.6
2,425,044	+		IAI47_11455	0.77	-1.0
2,425,044	+		IAI47_11455	0.77	+1.9
2,425,045	-		IAI47_11455	0.78	+1.2
2,425,045	-		IAI47_11455	0.78	+2.5
2,425,045	-		IAI47_11455	0.78	-3.6
2,425,045	-		IAI47_11455	0.78	+0.9
2,425,045	-		IAI47_11455	0.78	-0.1
2,425,045	-		IAI47_11455	0.78	+1.6
2,425,045	-		IAI47_11455	0.78	+3.4
2,425,045	-		IAI47_11455	0.78	+0.1
2,425,045	-		IAI47_11455	0.78	-2.7
2,425,045	-		IAI47_11455	0.78	-1.0
2,425,045	-		IAI47_11455	0.78	-2.1
2,425,045	-		IAI47_11455	0.78	+2.2
2,425,045	-		IAI47_11455	0.78	-2.1
2,425,045	-		IAI47_11455	0.78	-1.1
2,425,045	-		IAI47_11455	0.78	+1.4
2,425,045	-		IAI47_11455	0.78	-1.9
2,425,045	-		IAI47_11455	0.78	-1.0
2,425,045	-		IAI47_11455	0.78	+0.8
2,425,045	-		IAI47_11455	0.78	+1.0
2,425,045	-		IAI47_11455	0.78	-1.0
2,425,045	-		IAI47_11455	0.78	-0.7
2,425,045	-		IAI47_11455	0.78	+1.0
2,425,045	-		IAI47_11455	0.78	+0.8
2,425,045	-		IAI47_11455	0.78	+2.1
2,425,045	-		IAI47_11455	0.78	+0.5
2,425,064	+		IAI47_11455	0.79	-1.6
2,425,065	-		IAI47_11455	0.79	-2.9
2,425,108	+		IAI47_11455	0.82	+1.1
2,425,109	-		IAI47_11455	0.82	+1.2
2,425,132	+		IAI47_11455	0.84	-1.0
2,425,133	-		IAI47_11455	0.84	-0.7
2,425,133	-		IAI47_11455	0.84	-0.3
2,425,146	+		IAI47_11455	0.85	-0.2
2,425,146	+		IAI47_11455	0.85	+1.4
2,425,146	+		IAI47_11455	0.85	-1.1
2,425,146	+		IAI47_11455	0.85	+1.0
2,425,146	+		IAI47_11455	0.85	-1.2
2,425,146	+		IAI47_11455	0.85	-0.2
2,425,147	-		IAI47_11455	0.85	-0.6
2,425,147	-		IAI47_11455	0.85	-1.6
2,425,156	+		IAI47_11455	0.86	+1.9
2,425,156	+		IAI47_11455	0.86	-1.7
2,425,157	-		IAI47_11455	0.86	-3.0
2,425,159	-		IAI47_11455	0.86	-0.2
2,425,181	-		IAI47_11455	0.88	-2.0
2,425,255	+				+0.8
2,425,265	-				-0.4
2,425,297	+				+1.8
2,425,297	+				-2.8
2,425,297	+				+0.7
2,425,297	+				+1.4
2,425,297	+				-2.3
2,425,297	+				-0.6
2,425,297	+				-1.5
2,425,298	-				-2.2
2,425,298	-				-0.7
2,425,298	-				+0.8
2,425,298	-				-1.0
2,425,298	-				+0.5
2,425,298	-				-2.1
2,425,298	-				+2.0
2,425,299	+				-0.6
2,425,299	+				+0.4
2,425,300	-				+0.4
2,425,301	+				-1.2
2,425,302	-				+3.1
2,425,302	-				-0.4
2,425,313	-				+0.4
2,425,323	+				-0.0
2,425,323	+				-0.1
2,425,323	+				+0.7
2,425,323	+				+1.4
2,425,323	+				-0.5
2,425,323	+				+0.8
2,425,324	-				+1.6
2,425,324	-				+1.2
2,425,324	-				+0.7
2,425,324	-				+1.4
2,425,324	-				-2.0
2,425,324	-				-1.6
2,425,327	+				-0.0
2,425,327	+				-2.1
2,425,327	+				-0.5
2,425,327	+				+0.8
2,425,328	-				-0.2
2,425,328	-				+4.2
2,425,328	-				+0.4
2,425,328	-				-0.4
2,425,355	+				+0.6
2,425,356	-				-1.0
2,425,356	-				-1.2
2,425,378	-				+0.6
2,425,385	+				-0.2
2,425,386	-				+1.4
2,425,386	-				+0.9
2,425,409	+				+0.8
2,425,410	-				+2.4
2,425,431	+				+0.2
2,425,431	+				-2.5
2,425,431	+				-1.6
2,425,431	+				-0.6
2,425,432	-				+1.8
2,425,432	-				+1.0
2,425,432	-				+1.1
2,425,432	-				+0.9
2,425,432	-				-1.8
2,425,454	+		IAI47_11460	0.11	-0.7
2,425,467	+		IAI47_11460	0.12	-0.1
2,425,467	+		IAI47_11460	0.12	-2.7
2,425,468	-		IAI47_11460	0.12	-1.1
2,425,468	-		IAI47_11460	0.12	+0.4
2,425,503	+		IAI47_11460	0.15	-2.5
2,425,504	-		IAI47_11460	0.15	-0.2
2,425,513	+		IAI47_11460	0.16	+0.5
2,425,514	-		IAI47_11460	0.16	+0.2
2,425,539	+		IAI47_11460	0.18	-1.4
2,425,540	-		IAI47_11460	0.18	-0.2
2,425,540	-		IAI47_11460	0.18	+0.1
2,425,540	-		IAI47_11460	0.18	-0.2
2,425,540	-		IAI47_11460	0.18	-1.0
2,425,573	+		IAI47_11460	0.21	+1.1
2,425,573	+		IAI47_11460	0.21	-1.1
2,425,573	+		IAI47_11460	0.21	+1.3
2,425,573	+		IAI47_11460	0.21	-0.2
2,425,574	-		IAI47_11460	0.21	+1.4
2,425,574	-		IAI47_11460	0.21	-0.6
2,425,574	-		IAI47_11460	0.21	-1.2
2,425,574	-		IAI47_11460	0.21	-1.2
2,425,601	+		IAI47_11460	0.24	+1.6
2,425,706	+		IAI47_11460	0.33	+0.8
2,425,706	+		IAI47_11460	0.33	+3.2
2,425,706	+		IAI47_11460	0.33	+0.1
2,425,707	-		IAI47_11460	0.33	+0.1
2,425,813	+		IAI47_11460	0.42	-0.3
2,425,813	+		IAI47_11460	0.42	-3.1
2,425,813	+		IAI47_11460	0.42	-1.2
2,425,813	+		IAI47_11460	0.42	+0.4
2,425,813	+		IAI47_11460	0.42	-0.7
2,425,813	+		IAI47_11460	0.42	-2.2
2,425,813	+		IAI47_11460	0.42	-2.2
2,425,813	+		IAI47_11460	0.42	-1.6
2,425,813	+		IAI47_11460	0.42	-0.3
2,425,813	+		IAI47_11460	0.42	-2.0
2,425,813	+		IAI47_11460	0.42	-1.2
2,425,813	+		IAI47_11460	0.42	-1.4
2,425,813	+		IAI47_11460	0.42	+0.5
2,425,813	+		IAI47_11460	0.42	+1.0
2,425,814	-		IAI47_11460	0.42	-2.5
2,425,814	-		IAI47_11460	0.42	+1.4
2,425,814	-		IAI47_11460	0.42	+1.4
2,425,814	-		IAI47_11460	0.42	+0.9
2,425,814	-		IAI47_11460	0.42	-0.4
2,425,814	-		IAI47_11460	0.42	-0.3
2,425,814	-		IAI47_11460	0.42	-0.5
2,425,814	-		IAI47_11460	0.42	-0.1
2,425,814	-		IAI47_11460	0.42	+1.4
2,425,814	-		IAI47_11460	0.42	-0.9
2,425,814	-		IAI47_11460	0.42	+0.6
2,425,814	-		IAI47_11460	0.42	+0.2
2,425,814	-		IAI47_11460	0.42	+0.5
2,425,814	-		IAI47_11460	0.42	+0.4
2,425,829	+		IAI47_11460	0.43	+0.4
2,425,830	-		IAI47_11460	0.43	+0.1
2,425,833	-		IAI47_11460	0.44	-0.1
2,425,833	-		IAI47_11460	0.44	-1.3
2,425,833	-		IAI47_11460	0.44	-1.1
2,425,850	+		IAI47_11460	0.45	+1.1
2,425,850	+		IAI47_11460	0.45	-1.8
2,425,851	-		IAI47_11460	0.45	+0.2
2,425,851	-		IAI47_11460	0.45	-0.4
2,425,855	+		IAI47_11460	0.46	+1.2
2,425,855	+		IAI47_11460	0.46	-0.2
2,425,855	+		IAI47_11460	0.46	-0.6
2,425,856	-		IAI47_11460	0.46	-1.0
2,425,856	-		IAI47_11460	0.46	-0.2
2,425,892	+		IAI47_11460	0.49	-0.5
2,425,893	-		IAI47_11460	0.49	-1.6
2,425,899	-		IAI47_11460	0.49	+1.0
2,425,899	-		IAI47_11460	0.49	+0.9
2,425,914	+		IAI47_11460	0.51	-3.6
2,425,914	+		IAI47_11460	0.51	-0.4
2,425,914	+		IAI47_11460	0.51	-1.2
2,425,914	+		IAI47_11460	0.51	+1.3
2,425,951	-		IAI47_11460	0.54	-0.5
2,425,968	-		IAI47_11460	0.55	+3.2
2,425,983	+		IAI47_11460	0.57	+2.4
2,425,984	-		IAI47_11460	0.57	-1.0
2,425,984	-		IAI47_11460	0.57	+1.1
2,425,984	-		IAI47_11460	0.57	-0.6
2,425,995	-		IAI47_11460	0.58	+0.5
2,425,995	-		IAI47_11460	0.58	+1.4
2,425,995	-		IAI47_11460	0.58	+1.2
2,425,995	-		IAI47_11460	0.58	+0.4
2,425,997	+		IAI47_11460	0.58	-1.5
2,425,997	+		IAI47_11460	0.58	-1.1
2,426,064	+		IAI47_11460	0.64	+0.4
2,426,065	-		IAI47_11460	0.64	-1.5
2,426,065	-		IAI47_11460	0.64	-1.0
2,426,065	-		IAI47_11460	0.64	-1.8
2,426,078	+		IAI47_11460	0.65	-0.2
2,426,079	-		IAI47_11460	0.65	-1.7
2,426,079	-		IAI47_11460	0.65	-2.5
2,426,079	-		IAI47_11460	0.65	-1.3
2,426,079	-		IAI47_11460	0.65	+0.2
2,426,140	+		IAI47_11460	0.70	+0.4
2,426,187	+		IAI47_11460	0.74	-1.0
2,426,204	+		IAI47_11460	0.76	+0.4
2,426,205	-		IAI47_11460	0.76	-1.7
2,426,205	-		IAI47_11460	0.76	+0.0
2,426,205	-		IAI47_11460	0.76	-0.2
2,426,205	-		IAI47_11460	0.76	+0.2
2,426,205	-		IAI47_11460	0.76	+0.6
2,426,205	-		IAI47_11460	0.76	-2.5
2,426,205	-		IAI47_11460	0.76	+0.5
2,426,255	+		IAI47_11460	0.80	+0.4
2,426,255	+		IAI47_11460	0.80	-1.7
2,426,256	-		IAI47_11460	0.80	-1.2
2,426,256	-		IAI47_11460	0.80	+1.0
2,426,256	-		IAI47_11460	0.80	-3.2
2,426,256	-		IAI47_11460	0.80	-1.6
2,426,258	-		IAI47_11460	0.80	+1.8
2,426,308	+		IAI47_11460	0.85	-3.0
2,426,309	-		IAI47_11460	0.85	-0.6
2,426,309	-		IAI47_11460	0.85	+0.5
2,426,309	-		IAI47_11460	0.85	-3.3
2,426,311	+		IAI47_11460	0.85	+0.5
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