Strain Fitness in Pantoea sp. MT58 around IAI47_10340

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,187,885	-		IAI47_10335	0.44	+1.0
2,187,947	-		IAI47_10335	0.48	+1.1
2,187,959	+		IAI47_10335	0.49	+1.3
2,188,028	+		IAI47_10335	0.54	-0.3
2,188,029	-		IAI47_10335	0.54	+0.8
2,188,029	-		IAI47_10335	0.54	+0.9
2,188,029	-		IAI47_10335	0.54	+1.3
2,188,040	+		IAI47_10335	0.55	+0.7
2,188,040	+		IAI47_10335	0.55	-0.1
2,188,040	+		IAI47_10335	0.55	-0.7
2,188,041	-		IAI47_10335	0.55	+0.7
2,188,041	-		IAI47_10335	0.55	-0.2
2,188,041	-		IAI47_10335	0.55	-0.3
2,188,041	-		IAI47_10335	0.55	-2.5
2,188,041	-		IAI47_10335	0.55	-1.0
2,188,113	-		IAI47_10335	0.60	-2.1
2,188,130	+		IAI47_10335	0.61	-0.1
2,188,136	+		IAI47_10335	0.62	+0.3
2,188,302	-		IAI47_10335	0.74	-1.0
2,188,302	-		IAI47_10335	0.74	-0.7
2,188,302	-		IAI47_10335	0.74	+1.3
2,188,361	+		IAI47_10335	0.78	-0.7
2,188,362	-		IAI47_10335	0.78	+2.5
2,188,362	-		IAI47_10335	0.78	-0.5
2,188,451	+		IAI47_10335	0.84	-0.5
2,188,452	-		IAI47_10335	0.84	-1.3
2,188,624	-				-2.7
2,188,674	+				+3.3
2,188,674	+				+0.0
2,188,674	+				+0.9
2,188,674	+				-0.7
2,188,674	+				+1.3
2,188,674	+				+1.3
2,188,674	+				-0.5
2,188,675	-				+1.3
2,188,675	-				-2.1
2,188,675	-				+0.9
2,188,675	-				+0.7
2,188,675	-				+0.1
2,188,675	-				+0.4
2,188,675	-				-0.1
2,188,675	-				+2.3
2,188,675	-				-0.3
2,188,675	-				-1.0
2,188,695	+				+0.4
2,188,695	+				+0.6
2,188,696	-				-0.7
2,188,747	+				-0.6
2,188,751	-				+1.0
2,188,751	-				-0.3
2,188,754	-				+0.3
2,188,754	-				-2.8
2,188,754	-				+0.9
2,188,755	+				+1.3
2,188,761	-				-0.7
2,188,781	+				+0.0
2,188,782	-				-2.3
2,188,782	-				+0.2
2,188,782	-				-1.0
2,188,801	+				+0.8
2,188,801	+				+1.5
2,188,801	+				+0.7
2,188,802	-				-0.5
2,188,802	-				+0.3
2,188,805	+				-1.5
2,188,806	-				-0.3
2,188,830	-				+0.7
2,188,830	-				+1.7
2,188,854	+				+1.4
2,188,862	+				-0.3
2,188,862	+				+0.0
2,188,862	+				-1.5
2,188,862	+				+1.5
2,188,863	-				+1.3
2,188,863	-				-0.7
2,188,899	-				+0.3
2,188,899	-				-1.0
2,189,127	+		IAI47_10340	0.22	-0.3
2,189,128	-		IAI47_10340	0.22	-1.0
2,189,128	-		IAI47_10340	0.22	+1.4
2,189,128	-		IAI47_10340	0.22	+2.4
2,189,240	+		IAI47_10340	0.32	+0.3
2,189,240	+		IAI47_10340	0.32	-1.5
2,189,241	-		IAI47_10340	0.32	+1.3
2,189,241	-		IAI47_10340	0.32	+0.8
2,189,242	+		IAI47_10340	0.32	-1.5
2,189,243	-		IAI47_10340	0.32	-0.3
2,189,273	+		IAI47_10340	0.34	-1.8
2,189,274	-		IAI47_10340	0.35	-1.3
2,189,398	+		IAI47_10340	0.45	+1.3
2,189,399	-		IAI47_10340	0.45	-1.7
2,189,419	+		IAI47_10340	0.47	-2.3
2,189,518	+		IAI47_10340	0.55	-2.7
2,189,519	-		IAI47_10340	0.55	+3.6
2,189,519	-		IAI47_10340	0.55	+0.5
2,189,519	-		IAI47_10340	0.55	+1.2
2,189,519	-		IAI47_10340	0.55	+1.7
2,189,534	+		IAI47_10340	0.57	-1.5
2,189,534	+		IAI47_10340	0.57	-0.9
2,189,535	-		IAI47_10340	0.57	+2.3
2,189,634	-		IAI47_10340	0.65	-0.7
2,189,705	+		IAI47_10340	0.71	-1.2
2,189,706	-		IAI47_10340	0.71	-2.7
2,189,706	-		IAI47_10340	0.71	-1.3
2,189,706	-		IAI47_10340	0.71	-0.9
2,189,706	-		IAI47_10340	0.71	-0.3
2,189,706	-		IAI47_10340	0.71	-2.4
2,189,708	-		IAI47_10340	0.71	-0.3
2,189,713	+		IAI47_10340	0.72	+1.1
2,189,836	+		IAI47_10340	0.82	-1.3
2,189,837	-		IAI47_10340	0.82	-1.7
2,189,837	-		IAI47_10340	0.82	-1.1
2,190,036	+				-2.1
2,190,037	-				-1.1
2,190,037	-				-0.7
2,190,066	-				-2.8
2,190,072	+				-0.8
2,190,073	-				-0.7
2,190,073	-				+1.1
2,190,075	+				+1.3
2,190,076	-				+1.3
2,190,076	-				-1.0
2,190,085	+				-0.6
2,190,085	+				+0.1
2,190,088	+				+0.9
2,190,089	-				+0.2
2,190,161	-				+1.1
2,190,198	+				+0.7
2,190,198	+				-0.0
2,190,198	+				+0.3
2,190,199	-				-1.0
2,190,199	-				-1.0
2,190,222	+				+3.5
2,190,222	+				+0.1
2,190,223	-				-0.3
2,190,314	+				-1.5
2,190,314	+				+0.6
2,190,315	-				+1.3
2,190,315	-				-0.0
2,190,315	-				+1.6
2,190,315	-				-0.3
2,190,315	-				-2.4
2,190,315	-				-0.3
2,190,315	-				-1.7
2,190,315	-				-2.3
2,190,344	+		IAI47_10345	0.11	-0.1
2,190,344	+		IAI47_10345	0.11	-0.6
2,190,344	+		IAI47_10345	0.11	-0.6
2,190,345	-		IAI47_10345	0.11	-0.1
2,190,345	-		IAI47_10345	0.11	-0.8
2,190,353	+		IAI47_10345	0.12	+1.9
2,190,353	+		IAI47_10345	0.12	+1.2
2,190,353	+		IAI47_10345	0.12	+0.1
2,190,354	-		IAI47_10345	0.12	+0.0
2,190,354	-		IAI47_10345	0.12	-1.0
2,190,381	+		IAI47_10345	0.14	-0.3
2,190,381	+		IAI47_10345	0.14	+0.9
2,190,381	+		IAI47_10345	0.14	+0.8
2,190,381	+		IAI47_10345	0.14	-0.7
2,190,382	-		IAI47_10345	0.14	+0.9
2,190,382	-		IAI47_10345	0.14	+1.0
2,190,382	-		IAI47_10345	0.14	-1.1
2,190,382	-		IAI47_10345	0.14	-0.8
2,190,382	-		IAI47_10345	0.14	+1.6
2,190,419	-		IAI47_10345	0.16	-2.1
2,190,419	-		IAI47_10345	0.16	-0.7
2,190,535	+		IAI47_10345	0.24	-0.3
2,190,536	-		IAI47_10345	0.24	+0.2
2,190,602	-		IAI47_10345	0.28	-1.4
2,190,623	+		IAI47_10345	0.30	+0.1
2,190,623	+		IAI47_10345	0.30	+0.6
2,190,641	-		IAI47_10345	0.31	-0.8
2,190,669	-		IAI47_10345	0.33	-1.5
2,190,733	+		IAI47_10345	0.37	-0.4
2,190,772	+		IAI47_10345	0.40	-2.3
2,190,826	+		IAI47_10345	0.43	+0.3
2,190,949	+		IAI47_10345	0.52	+1.1
2,190,950	-		IAI47_10345	0.52	-1.0
2,190,979	+		IAI47_10345	0.54	-0.7
2,190,979	+		IAI47_10345	0.54	+0.9
2,190,979	+		IAI47_10345	0.54	+1.3
2,190,979	+		IAI47_10345	0.54	+0.5
2,190,979	+		IAI47_10345	0.54	-0.4
2,190,979	+		IAI47_10345	0.54	-0.4
2,190,980	-		IAI47_10345	0.54	-1.0
2,190,980	-		IAI47_10345	0.54	+1.8
2,190,980	-		IAI47_10345	0.54	+0.6
2,190,980	-		IAI47_10345	0.54	+0.5
2,190,980	-		IAI47_10345	0.54	-1.0
2,190,980	-		IAI47_10345	0.54	+1.1
2,191,003	+		IAI47_10345	0.55	+0.1
2,191,010	+		IAI47_10345	0.56	-2.9
2,191,010	+		IAI47_10345	0.56	+1.1