Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27395

Experiment: L-Citrulline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27390 and AO353_27395 are separated by 209 nucleotidesAO353_27395 and AO353_27400 are separated by 331 nucleotidesAO353_27400 and AO353_27405 are separated by 98 nucleotides AO353_27390: AO353_27390 - conjugal transfer protein TraC, at 5,983,157 to 5,985,373 _27390 AO353_27395: AO353_27395 - hypothetical protein, at 5,985,583 to 5,986,101 _27395 AO353_27400: AO353_27400 - hypothetical protein, at 5,986,433 to 5,986,666 _27400 AO353_27405: AO353_27405 - peptidase S24, at 5,986,765 to 5,987,412 _27405 Position (kb) 5985 5986 5987Strain fitness (log2 ratio) -2 -1 0 1 2at 5984.662 kb on + strand, within AO353_27390at 5984.841 kb on + strand, within AO353_27390at 5984.875 kb on - strand, within AO353_27390at 5984.875 kb on - strand, within AO353_27390at 5984.994 kb on + strand, within AO353_27390at 5984.995 kb on - strandat 5985.013 kb on + strand, within AO353_27390at 5985.014 kb on - strandat 5985.067 kb on + strand, within AO353_27390at 5985.249 kb on + strandat 5985.249 kb on + strandat 5985.249 kb on + strandat 5985.249 kb on + strandat 5985.249 kb on + strandat 5985.250 kb on - strandat 5985.250 kb on - strandat 5985.299 kb on + strandat 5985.299 kb on + strandat 5985.359 kb on + strandat 5985.481 kb on + strandat 5985.501 kb on + strandat 5985.501 kb on + strandat 5985.521 kb on + strandat 5985.566 kb on + strandat 5985.620 kb on + strandat 5985.620 kb on + strandat 5985.620 kb on + strandat 5985.620 kb on + strandat 5985.620 kb on + strandat 5985.620 kb on + strandat 5985.621 kb on - strandat 5985.621 kb on - strandat 5985.621 kb on - strandat 5985.668 kb on - strand, within AO353_27395at 5985.764 kb on + strand, within AO353_27395at 5985.764 kb on + strand, within AO353_27395at 5985.765 kb on - strand, within AO353_27395at 5985.765 kb on - strand, within AO353_27395at 5985.780 kb on + strand, within AO353_27395at 5985.809 kb on + strand, within AO353_27395at 5985.809 kb on + strand, within AO353_27395at 5985.809 kb on + strand, within AO353_27395at 5985.810 kb on - strand, within AO353_27395at 5985.810 kb on - strand, within AO353_27395at 5985.810 kb on - strand, within AO353_27395at 5985.810 kb on - strand, within AO353_27395at 5985.810 kb on - strand, within AO353_27395at 5985.810 kb on - strand, within AO353_27395at 5985.939 kb on + strand, within AO353_27395at 5985.939 kb on + strand, within AO353_27395at 5985.939 kb on + strand, within AO353_27395at 5985.940 kb on - strand, within AO353_27395at 5985.940 kb on - strand, within AO353_27395at 5985.940 kb on - strand, within AO353_27395at 5985.940 kb on - strand, within AO353_27395at 5986.013 kb on + strand, within AO353_27395at 5986.116 kb on + strandat 5986.116 kb on + strandat 5986.116 kb on + strandat 5986.116 kb on + strandat 5986.116 kb on + strandat 5986.116 kb on + strandat 5986.150 kb on + strandat 5986.150 kb on + strandat 5986.150 kb on + strandat 5986.150 kb on + strandat 5986.151 kb on - strandat 5986.151 kb on - strandat 5986.151 kb on - strandat 5986.151 kb on - strandat 5986.151 kb on - strandat 5986.151 kb on - strandat 5986.189 kb on + strandat 5986.190 kb on - strandat 5986.353 kb on + strandat 5986.353 kb on + strandat 5986.434 kb on + strandat 5986.434 kb on + strandat 5986.434 kb on + strandat 5986.434 kb on + strandat 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.584 kb on + strand, within AO353_27400at 5986.621 kb on + strand, within AO353_27400at 5986.621 kb on + strand, within AO353_27400at 5986.673 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
remove
5,984,662 + AO353_27390 0.68 -1.1
5,984,841 + AO353_27390 0.76 +0.3
5,984,875 - AO353_27390 0.77 -0.2
5,984,875 - AO353_27390 0.77 -0.1
5,984,994 + AO353_27390 0.83 +0.5
5,984,995 - -0.0
5,985,013 + AO353_27390 0.84 +0.5
5,985,014 - -0.3
5,985,067 + AO353_27390 0.86 -0.9
5,985,249 + +0.2
5,985,249 + +0.2
5,985,249 + -0.0
5,985,249 + +0.4
5,985,249 + -0.6
5,985,250 - +0.0
5,985,250 - +1.0
5,985,299 + +0.2
5,985,299 + -0.6
5,985,359 + -0.0
5,985,481 + -0.9
5,985,501 + -0.2
5,985,501 + +0.2
5,985,521 + -0.4
5,985,566 + +0.8
5,985,620 + -0.3
5,985,620 + +0.2
5,985,620 + +0.7
5,985,620 + +1.2
5,985,620 + +1.1
5,985,620 + -0.0
5,985,621 - -0.4
5,985,621 - -2.1
5,985,621 - -1.7
5,985,668 - AO353_27395 0.16 +0.7
5,985,764 + AO353_27395 0.35 +0.2
5,985,764 + AO353_27395 0.35 +0.4
5,985,765 - AO353_27395 0.35 -0.1
5,985,765 - AO353_27395 0.35 +1.0
5,985,780 + AO353_27395 0.38 +0.7
5,985,809 + AO353_27395 0.44 +0.4
5,985,809 + AO353_27395 0.44 +0.2
5,985,809 + AO353_27395 0.44 +0.4
5,985,810 - AO353_27395 0.44 -0.0
5,985,810 - AO353_27395 0.44 +1.1
5,985,810 - AO353_27395 0.44 -2.7
5,985,810 - AO353_27395 0.44 +0.8
5,985,810 - AO353_27395 0.44 -0.2
5,985,810 - AO353_27395 0.44 +0.4
5,985,939 + AO353_27395 0.69 +0.4
5,985,939 + AO353_27395 0.69 -0.4
5,985,939 + AO353_27395 0.69 -0.7
5,985,940 - AO353_27395 0.69 -0.1
5,985,940 - AO353_27395 0.69 +2.1
5,985,940 - AO353_27395 0.69 -0.3
5,985,940 - AO353_27395 0.69 +0.7
5,986,013 + AO353_27395 0.83 +0.2
5,986,116 + -0.2
5,986,116 + +0.5
5,986,116 + -0.9
5,986,116 + +0.4
5,986,116 + +0.3
5,986,116 + +0.1
5,986,150 + +0.7
5,986,150 + -1.8
5,986,150 + -1.2
5,986,150 + -0.3
5,986,151 - +0.7
5,986,151 - -0.6
5,986,151 - -0.6
5,986,151 - -0.5
5,986,151 - +0.2
5,986,151 - +1.5
5,986,189 + +0.4
5,986,190 - -1.8
5,986,353 + +0.7
5,986,353 + +0.6
5,986,434 + -0.1
5,986,434 + +0.1
5,986,434 + +0.5
5,986,434 + -0.5
5,986,584 + AO353_27400 0.65 +0.2
5,986,584 + AO353_27400 0.65 -1.1
5,986,584 + AO353_27400 0.65 -0.1
5,986,584 + AO353_27400 0.65 -0.6
5,986,584 + AO353_27400 0.65 +0.5
5,986,621 + AO353_27400 0.80 +0.5
5,986,621 + AO353_27400 0.80 +0.5
5,986,673 + +1.2

Or see this region's nucleotide sequence