Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26335

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26325 and AO353_26330 are separated by 1 nucleotidesAO353_26330 and AO353_26335 are separated by 161 nucleotidesAO353_26335 and AO353_26340 are separated by 156 nucleotidesAO353_26340 and AO353_26345 are separated by 47 nucleotides AO353_26325: AO353_26325 - phage replication protein, at 5,780,758 to 5,781,741 _26325 AO353_26330: AO353_26330 - Rha family transcriptional regulator, at 5,781,743 to 5,782,549 _26330 AO353_26335: AO353_26335 - hypothetical protein, at 5,782,711 to 5,782,917 _26335 AO353_26340: AO353_26340 - hypothetical protein, at 5,783,074 to 5,783,796 _26340 AO353_26345: AO353_26345 - hypothetical protein, at 5,783,844 to 5,784,101 _26345 Position (kb) 5782 5783Strain fitness (log2 ratio) -2 -1 0 1 2at 5781.734 kb on + strandat 5781.734 kb on + strandat 5781.734 kb on + strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.735 kb on - strandat 5781.789 kb on + strandat 5781.789 kb on + strandat 5781.790 kb on - strandat 5781.844 kb on - strand, within AO353_26330at 5781.922 kb on - strand, within AO353_26330at 5781.922 kb on - strand, within AO353_26330at 5782.199 kb on + strand, within AO353_26330at 5782.199 kb on + strand, within AO353_26330at 5782.273 kb on + strand, within AO353_26330at 5782.276 kb on - strand, within AO353_26330at 5782.317 kb on + strand, within AO353_26330at 5782.317 kb on + strandat 5782.317 kb on + strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.318 kb on - strand, within AO353_26330at 5782.350 kb on + strand, within AO353_26330at 5782.351 kb on - strand, within AO353_26330at 5782.351 kb on - strand, within AO353_26330at 5782.351 kb on - strand, within AO353_26330at 5782.370 kb on + strand, within AO353_26330at 5782.370 kb on + strand, within AO353_26330at 5782.371 kb on - strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.376 kb on + strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.377 kb on - strand, within AO353_26330at 5782.408 kb on + strand, within AO353_26330at 5782.493 kb on - strandat 5782.549 kb on + strandat 5782.549 kb on + strandat 5782.549 kb on + strandat 5782.550 kb on - strandat 5782.550 kb on - strandat 5782.563 kb on + strandat 5782.564 kb on - strandat 5782.564 kb on - strandat 5782.683 kb on + strandat 5782.683 kb on + strandat 5782.683 kb on + strandat 5782.712 kb on + strandat 5782.712 kb on + strandat 5782.712 kb on + strandat 5782.799 kb on + strand, within AO353_26335at 5782.799 kb on + strand, within AO353_26335at 5782.799 kb on + strand, within AO353_26335at 5782.799 kb on + strand, within AO353_26335at 5782.799 kb on + strand, within AO353_26335at 5782.799 kb on + strand, within AO353_26335at 5782.803 kb on + strand, within AO353_26335at 5782.830 kb on + strand, within AO353_26335at 5782.830 kb on + strand, within AO353_26335at 5782.848 kb on + strand, within AO353_26335at 5782.848 kb on + strand, within AO353_26335at 5783.794 kb on + strandat 5783.795 kb on - strandat 5783.795 kb on - strandat 5783.878 kb on + strand, within AO353_26345at 5783.879 kb on - strand, within AO353_26345at 5783.879 kb on - strand, within AO353_26345

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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5,781,734 + +1.5
5,781,734 + +0.4
5,781,734 + -0.1
5,781,735 - +0.1
5,781,735 - +1.1
5,781,735 - -0.0
5,781,735 - -0.5
5,781,735 - +0.5
5,781,735 - +1.6
5,781,735 - +0.5
5,781,735 - -0.2
5,781,735 - -0.6
5,781,735 - +0.6
5,781,789 + -0.5
5,781,789 + -0.5
5,781,790 - -0.6
5,781,844 - AO353_26330 0.13 +0.3
5,781,922 - AO353_26330 0.22 -0.0
5,781,922 - AO353_26330 0.22 +0.6
5,782,199 + AO353_26330 0.57 -1.6
5,782,199 + AO353_26330 0.57 -2.2
5,782,273 + AO353_26330 0.66 +0.0
5,782,276 - AO353_26330 0.66 +2.0
5,782,317 + AO353_26330 0.71 -0.3
5,782,317 + +1.3
5,782,317 + AO353_26330 0.71 -1.5
5,782,318 - AO353_26330 0.71 -1.1
5,782,318 - AO353_26330 0.71 -0.3
5,782,318 - AO353_26330 0.71 +0.4
5,782,318 - AO353_26330 0.71 +0.6
5,782,318 - AO353_26330 0.71 -0.3
5,782,318 - AO353_26330 0.71 -0.0
5,782,318 - AO353_26330 0.71 +0.2
5,782,350 + AO353_26330 0.75 -0.5
5,782,351 - AO353_26330 0.75 -1.2
5,782,351 - AO353_26330 0.75 +0.1
5,782,351 - AO353_26330 0.75 +0.0
5,782,370 + AO353_26330 0.78 -0.0
5,782,370 + AO353_26330 0.78 -0.6
5,782,371 - AO353_26330 0.78 -0.9
5,782,376 + AO353_26330 0.78 +0.4
5,782,376 + AO353_26330 0.78 -0.3
5,782,376 + AO353_26330 0.78 -0.5
5,782,376 + AO353_26330 0.78 -0.1
5,782,376 + AO353_26330 0.78 -1.0
5,782,376 + AO353_26330 0.78 -0.2
5,782,376 + AO353_26330 0.78 +0.1
5,782,376 + AO353_26330 0.78 -0.2
5,782,377 - AO353_26330 0.79 +0.3
5,782,377 - AO353_26330 0.79 +0.3
5,782,377 - AO353_26330 0.79 -0.5
5,782,377 - AO353_26330 0.79 -0.5
5,782,377 - AO353_26330 0.79 +0.1
5,782,377 - AO353_26330 0.79 +0.8
5,782,408 + AO353_26330 0.82 -0.7
5,782,493 - +1.1
5,782,549 + +1.1
5,782,549 + +1.1
5,782,549 + +0.0
5,782,550 - -0.9
5,782,550 - -0.4
5,782,563 + +0.4
5,782,564 - -0.7
5,782,564 - -0.7
5,782,683 + +0.7
5,782,683 + +1.4
5,782,683 + +1.0
5,782,712 + -0.5
5,782,712 + +0.0
5,782,712 + +0.3
5,782,799 + AO353_26335 0.43 +0.2
5,782,799 + AO353_26335 0.43 -0.2
5,782,799 + AO353_26335 0.43 +0.9
5,782,799 + AO353_26335 0.43 -0.5
5,782,799 + AO353_26335 0.43 +1.5
5,782,799 + AO353_26335 0.43 +0.3
5,782,803 + AO353_26335 0.44 +0.0
5,782,830 + AO353_26335 0.57 +1.1
5,782,830 + AO353_26335 0.57 +0.0
5,782,848 + AO353_26335 0.66 -0.1
5,782,848 + AO353_26335 0.66 +0.7
5,783,794 + -1.2
5,783,795 - +0.7
5,783,795 - +0.2
5,783,878 + AO353_26345 0.13 +0.1
5,783,879 - AO353_26345 0.14 +1.1
5,783,879 - AO353_26345 0.14 -0.2

Or see this region's nucleotide sequence