Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21665

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21660 and AO353_21665 are separated by 196 nucleotidesAO353_21665 and AO353_21670 are separated by 119 nucleotidesAO353_21670 and AO353_21675 are separated by 58 nucleotides AO353_21660: AO353_21660 - cobalamin biosynthesis protein CobN, at 4,747,444 to 4,751,217 _21660 AO353_21665: AO353_21665 - magnesium chelatase, at 4,751,414 to 4,752,421 _21665 AO353_21670: AO353_21670 - magnesium chelatase, at 4,752,541 to 4,753,077 _21670 AO353_21675: AO353_21675 - phospholipase, at 4,753,136 to 4,754,779 _21675 Position (kb) 4751 4752 4753Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4750.419 kb on + strand, within AO353_21660at 4750.540 kb on + strand, within AO353_21660at 4750.609 kb on + strand, within AO353_21660at 4750.609 kb on + strand, within AO353_21660at 4750.609 kb on + strand, within AO353_21660at 4750.610 kb on - strand, within AO353_21660at 4750.610 kb on - strand, within AO353_21660at 4750.753 kb on + strand, within AO353_21660at 4750.753 kb on + strand, within AO353_21660at 4750.753 kb on + strand, within AO353_21660at 4750.753 kb on + strand, within AO353_21660at 4750.754 kb on - strand, within AO353_21660at 4750.754 kb on - strand, within AO353_21660at 4750.754 kb on - strand, within AO353_21660at 4750.754 kb on - strand, within AO353_21660at 4750.754 kb on - strand, within AO353_21660at 4750.754 kb on - strand, within AO353_21660at 4750.756 kb on + strand, within AO353_21660at 4750.756 kb on + strand, within AO353_21660at 4750.756 kb on + strand, within AO353_21660at 4750.819 kb on + strand, within AO353_21660at 4750.819 kb on + strand, within AO353_21660at 4750.977 kb on + strandat 4750.977 kb on + strandat 4750.977 kb on + strandat 4751.027 kb on - strandat 4751.048 kb on - strandat 4751.048 kb on - strandat 4751.088 kb on + strandat 4751.088 kb on + strandat 4751.088 kb on + strandat 4751.089 kb on - strandat 4751.089 kb on - strandat 4751.199 kb on + strandat 4751.200 kb on - strandat 4751.200 kb on - strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.201 kb on + strandat 4751.202 kb on - strandat 4751.202 kb on - strandat 4751.202 kb on - strandat 4751.202 kb on - strandat 4751.202 kb on - strandat 4751.389 kb on + strandat 4751.389 kb on + strandat 4751.389 kb on + strandat 4751.390 kb on - strandat 4751.390 kb on - strandat 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strand, within AO353_21665at 4751.720 kb on + strandat 4751.721 kb on - strand, within AO353_21665at 4751.721 kb on - strand, within AO353_21665at 4751.721 kb on - strand, within AO353_21665at 4751.721 kb on - strand, within AO353_21665at 4751.721 kb on - strand, within AO353_21665at 4751.766 kb on + strand, within AO353_21665at 4752.373 kb on - strandat 4752.373 kb on - strandat 4752.420 kb on - strandat 4753.054 kb on + strandat 4753.062 kb on + strandat 4753.063 kb on - strandat 4753.075 kb on + strandat 4753.075 kb on + strandat 4753.075 kb on + strandat 4753.075 kb on + strandat 4753.075 kb on + strandat 4753.076 kb on - strandat 4753.088 kb on + strandat 4753.101 kb on + strandat 4753.101 kb on + strandat 4753.101 kb on + strandat 4753.101 kb on + strandat 4753.101 kb on + strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.102 kb on - strandat 4753.184 kb on + strandat 4753.184 kb on + strandat 4753.184 kb on + strandat 4753.184 kb on + strandat 4753.185 kb on - strandat 4753.185 kb on - strandat 4753.185 kb on - strandat 4753.185 kb on - strandat 4753.185 kb on - strandat 4753.207 kb on - strandat 4753.207 kb on - strandat 4753.344 kb on - strand, within AO353_21675at 4753.344 kb on - strand, within AO353_21675at 4753.344 kb on - strand, within AO353_21675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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4,750,419 + AO353_21660 0.79 -0.5
4,750,540 + AO353_21660 0.82 +0.2
4,750,609 + AO353_21660 0.84 -0.4
4,750,609 + AO353_21660 0.84 -0.6
4,750,609 + AO353_21660 0.84 -0.8
4,750,610 - AO353_21660 0.84 -0.4
4,750,610 - AO353_21660 0.84 -0.0
4,750,753 + AO353_21660 0.88 -0.1
4,750,753 + AO353_21660 0.88 -1.3
4,750,753 + AO353_21660 0.88 -1.7
4,750,753 + AO353_21660 0.88 +0.3
4,750,754 - AO353_21660 0.88 +0.3
4,750,754 - AO353_21660 0.88 -1.0
4,750,754 - AO353_21660 0.88 -0.6
4,750,754 - AO353_21660 0.88 -0.7
4,750,754 - AO353_21660 0.88 -0.7
4,750,754 - AO353_21660 0.88 +0.3
4,750,756 + AO353_21660 0.88 -1.8
4,750,756 + AO353_21660 0.88 -0.1
4,750,756 + AO353_21660 0.88 -0.8
4,750,819 + AO353_21660 0.89 +0.8
4,750,819 + AO353_21660 0.89 -1.5
4,750,977 + -0.9
4,750,977 + +0.0
4,750,977 + +0.2
4,751,027 - -1.2
4,751,048 - -3.4
4,751,048 - -1.0
4,751,088 + -0.2
4,751,088 + -1.8
4,751,088 + -0.8
4,751,089 - -0.2
4,751,089 - -1.2
4,751,199 + +0.1
4,751,200 - -0.8
4,751,200 - -0.4
4,751,201 + -0.7
4,751,201 + -1.2
4,751,201 + +0.1
4,751,201 + -1.5
4,751,201 + -2.0
4,751,201 + -0.6
4,751,201 + +0.2
4,751,201 + -1.0
4,751,201 + +0.1
4,751,201 + -2.6
4,751,202 - -2.8
4,751,202 - +0.1
4,751,202 - +0.2
4,751,202 - -0.1
4,751,202 - -1.5
4,751,389 + +0.0
4,751,389 + +0.4
4,751,389 + +0.3
4,751,390 - -1.1
4,751,390 - -1.2
4,751,720 + AO353_21665 0.30 -0.8
4,751,720 + AO353_21665 0.30 -2.1
4,751,720 + AO353_21665 0.30 -2.1
4,751,720 + AO353_21665 0.30 +0.8
4,751,720 + AO353_21665 0.30 -1.1
4,751,720 + AO353_21665 0.30 -3.1
4,751,720 + AO353_21665 0.30 -2.6
4,751,720 + AO353_21665 0.30 -1.4
4,751,720 + AO353_21665 0.30 +0.2
4,751,720 + AO353_21665 0.30 -2.1
4,751,720 + AO353_21665 0.30 -0.3
4,751,720 + +0.5
4,751,721 - AO353_21665 0.30 -0.9
4,751,721 - AO353_21665 0.30 +0.5
4,751,721 - AO353_21665 0.30 -0.3
4,751,721 - AO353_21665 0.30 -0.9
4,751,721 - AO353_21665 0.30 +0.5
4,751,766 + AO353_21665 0.35 -0.5
4,752,373 - +0.1
4,752,373 - -2.4
4,752,420 - +0.0
4,753,054 + -0.4
4,753,062 + -2.6
4,753,063 - -0.7
4,753,075 + -0.1
4,753,075 + +1.5
4,753,075 + -1.2
4,753,075 + -1.2
4,753,075 + -1.2
4,753,076 - +0.4
4,753,088 + -0.1
4,753,101 + -0.8
4,753,101 + -0.5
4,753,101 + +0.3
4,753,101 + +0.2
4,753,101 + -0.0
4,753,102 - +0.3
4,753,102 - +2.7
4,753,102 - +1.0
4,753,102 - +0.3
4,753,102 - -0.7
4,753,102 - +0.5
4,753,102 - -0.3
4,753,102 - +0.8
4,753,102 - -1.9
4,753,102 - +0.3
4,753,102 - -0.1
4,753,102 - -0.7
4,753,184 + -2.1
4,753,184 + -1.3
4,753,184 + -0.8
4,753,184 + -1.2
4,753,185 - -0.3
4,753,185 - +0.5
4,753,185 - -0.5
4,753,185 - -0.1
4,753,185 - +0.6
4,753,207 - -0.3
4,753,207 - -1.3
4,753,344 - AO353_21675 0.13 -0.5
4,753,344 - AO353_21675 0.13 -0.3
4,753,344 - AO353_21675 0.13 -2.2

Or see this region's nucleotide sequence