Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15990

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15985 and AO353_15990 are separated by 96 nucleotidesAO353_15990 and AO353_15995 are separated by 61 nucleotides AO353_15985: AO353_15985 - Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data), at 3,531,673 to 3,533,322 _15985 AO353_15990: AO353_15990 - maltoporin, at 3,533,419 to 3,534,642 _15990 AO353_15995: AO353_15995 - trehalose-specific PTS system, I, HPr, and IIA components (from data), at 3,534,704 to 3,537,238 _15995 Position (kb) 3533 3534 3535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3532.614 kb on + strandat 3532.730 kb on - strand, within AO353_15985at 3532.730 kb on - strand, within AO353_15985at 3532.730 kb on - strand, within AO353_15985at 3532.811 kb on - strand, within AO353_15985at 3532.811 kb on - strand, within AO353_15985at 3533.117 kb on - strand, within AO353_15985at 3533.165 kb on - strandat 3533.288 kb on - strandat 3533.432 kb on + strandat 3533.432 kb on + strandat 3533.432 kb on + strandat 3533.432 kb on + strandat 3533.432 kb on + strandat 3533.433 kb on - strandat 3533.433 kb on - strandat 3533.433 kb on - strandat 3533.433 kb on - strandat 3533.439 kb on + strandat 3533.469 kb on - strandat 3533.469 kb on - strandat 3533.584 kb on + strand, within AO353_15990at 3533.585 kb on - strand, within AO353_15990at 3533.585 kb on - strand, within AO353_15990at 3533.611 kb on + strand, within AO353_15990at 3533.612 kb on - strand, within AO353_15990at 3533.692 kb on + strand, within AO353_15990at 3533.692 kb on + strand, within AO353_15990at 3533.692 kb on + strand, within AO353_15990at 3533.693 kb on - strand, within AO353_15990at 3533.693 kb on - strand, within AO353_15990at 3533.701 kb on + strand, within AO353_15990at 3533.702 kb on - strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.758 kb on + strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.759 kb on - strand, within AO353_15990at 3533.777 kb on + strand, within AO353_15990at 3533.777 kb on + strand, within AO353_15990at 3533.778 kb on - strand, within AO353_15990at 3533.778 kb on - strand, within AO353_15990at 3533.781 kb on + strand, within AO353_15990at 3533.818 kb on + strand, within AO353_15990at 3533.821 kb on + strand, within AO353_15990at 3533.821 kb on + strand, within AO353_15990at 3533.821 kb on + strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.822 kb on - strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.854 kb on + strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.855 kb on - strand, within AO353_15990at 3533.858 kb on - strand, within AO353_15990at 3533.858 kb on - strand, within AO353_15990at 3533.887 kb on - strand, within AO353_15990at 3533.917 kb on + strand, within AO353_15990at 3533.917 kb on + strand, within AO353_15990at 3533.917 kb on + strand, within AO353_15990at 3533.918 kb on - strand, within AO353_15990at 3533.918 kb on - strand, within AO353_15990at 3533.918 kb on - strand, within AO353_15990at 3533.918 kb on - strand, within AO353_15990at 3533.924 kb on - strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.962 kb on + strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.963 kb on - strand, within AO353_15990at 3533.967 kb on + strand, within AO353_15990at 3534.000 kb on + strand, within AO353_15990at 3534.037 kb on + strand, within AO353_15990at 3534.037 kb on + strand, within AO353_15990at 3534.037 kb on + strand, within AO353_15990at 3534.037 kb on + strand, within AO353_15990at 3534.037 kb on + strand, within AO353_15990at 3534.038 kb on - strand, within AO353_15990at 3534.038 kb on - strand, within AO353_15990at 3534.038 kb on - strand, within AO353_15990at 3534.038 kb on - strand, within AO353_15990at 3534.038 kb on - strand, within AO353_15990at 3534.038 kb on - strand, within AO353_15990at 3534.173 kb on - strand, within AO353_15990at 3534.173 kb on - strand, within AO353_15990at 3534.174 kb on + strand, within AO353_15990at 3534.211 kb on + strand, within AO353_15990at 3534.211 kb on + strand, within AO353_15990at 3534.278 kb on - strand, within AO353_15990at 3534.278 kb on - strand, within AO353_15990at 3534.278 kb on - strand, within AO353_15990at 3534.278 kb on - strand, within AO353_15990at 3534.343 kb on + strand, within AO353_15990at 3534.343 kb on + strand, within AO353_15990at 3534.344 kb on - strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.496 kb on + strand, within AO353_15990at 3534.497 kb on - strand, within AO353_15990at 3534.497 kb on - strand, within AO353_15990at 3534.497 kb on - strand, within AO353_15990at 3534.499 kb on + strand, within AO353_15990at 3534.499 kb on + strand, within AO353_15990at 3534.499 kb on + strand, within AO353_15990at 3534.499 kb on + strand, within AO353_15990at 3534.499 kb on + strand, within AO353_15990at 3534.499 kb on + strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.500 kb on - strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.505 kb on + strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.506 kb on - strand, within AO353_15990at 3534.628 kb on + strandat 3534.628 kb on + strandat 3534.640 kb on + strandat 3534.640 kb on + strandat 3534.641 kb on - strandat 3534.641 kb on - strandat 3534.641 kb on - strandat 3534.641 kb on - strandat 3534.862 kb on - strandat 3534.927 kb on + strandat 3534.928 kb on - strandat 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.040 kb on + strand, within AO353_15995at 3535.041 kb on - strand, within AO353_15995at 3535.041 kb on - strand, within AO353_15995at 3535.041 kb on - strand, within AO353_15995at 3535.041 kb on - strand, within AO353_15995at 3535.315 kb on + strand, within AO353_15995at 3535.315 kb on + strand, within AO353_15995at 3535.315 kb on + strand, within AO353_15995at 3535.315 kb on + strand, within AO353_15995at 3535.315 kb on + strand, within AO353_15995at 3535.315 kb on + strand, within AO353_15995at 3535.316 kb on - strand, within AO353_15995at 3535.316 kb on - strand, within AO353_15995at 3535.316 kb on - strand, within AO353_15995at 3535.316 kb on - strand, within AO353_15995at 3535.491 kb on + strand, within AO353_15995at 3535.492 kb on - strand, within AO353_15995at 3535.594 kb on + strand, within AO353_15995at 3535.595 kb on - strand, within AO353_15995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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3,532,614 + -1.3
3,532,730 - AO353_15985 0.64 +0.3
3,532,730 - AO353_15985 0.64 -0.4
3,532,730 - AO353_15985 0.64 +0.1
3,532,811 - AO353_15985 0.69 -0.4
3,532,811 - AO353_15985 0.69 -0.5
3,533,117 - AO353_15985 0.88 -0.6
3,533,165 - +0.7
3,533,288 - -2.0
3,533,432 + +0.2
3,533,432 + +0.7
3,533,432 + -0.4
3,533,432 + +0.4
3,533,432 + -0.4
3,533,433 - -1.0
3,533,433 - -0.4
3,533,433 - -1.1
3,533,433 - +0.3
3,533,439 + +0.5
3,533,469 - +0.0
3,533,469 - +0.3
3,533,584 + AO353_15990 0.13 +0.1
3,533,585 - AO353_15990 0.14 +2.5
3,533,585 - AO353_15990 0.14 +0.3
3,533,611 + AO353_15990 0.16 +1.2
3,533,612 - AO353_15990 0.16 -0.8
3,533,692 + AO353_15990 0.22 +0.5
3,533,692 + AO353_15990 0.22 -2.9
3,533,692 + AO353_15990 0.22 +0.3
3,533,693 - AO353_15990 0.22 -1.3
3,533,693 - AO353_15990 0.22 +0.3
3,533,701 + AO353_15990 0.23 +0.2
3,533,702 - AO353_15990 0.23 +0.6
3,533,758 + AO353_15990 0.28 +0.9
3,533,758 + AO353_15990 0.28 -0.5
3,533,758 + AO353_15990 0.28 +0.3
3,533,758 + AO353_15990 0.28 -0.6
3,533,758 + AO353_15990 0.28 +0.0
3,533,758 + AO353_15990 0.28 -0.2
3,533,758 + AO353_15990 0.28 +1.0
3,533,758 + AO353_15990 0.28 -0.9
3,533,758 + AO353_15990 0.28 -2.0
3,533,758 + AO353_15990 0.28 +0.2
3,533,758 + AO353_15990 0.28 -0.9
3,533,758 + AO353_15990 0.28 +0.8
3,533,758 + AO353_15990 0.28 -0.3
3,533,758 + AO353_15990 0.28 -0.7
3,533,758 + AO353_15990 0.28 -0.3
3,533,759 - AO353_15990 0.28 +0.1
3,533,759 - AO353_15990 0.28 -1.5
3,533,759 - AO353_15990 0.28 -1.7
3,533,759 - AO353_15990 0.28 -1.7
3,533,759 - AO353_15990 0.28 +0.2
3,533,759 - AO353_15990 0.28 +0.7
3,533,759 - AO353_15990 0.28 +0.6
3,533,759 - AO353_15990 0.28 -0.3
3,533,759 - AO353_15990 0.28 -0.4
3,533,759 - AO353_15990 0.28 +0.1
3,533,759 - AO353_15990 0.28 -0.8
3,533,759 - AO353_15990 0.28 -1.2
3,533,777 + AO353_15990 0.29 -0.2
3,533,777 + AO353_15990 0.29 +0.3
3,533,778 - AO353_15990 0.29 +0.2
3,533,778 - AO353_15990 0.29 -0.3
3,533,781 + AO353_15990 0.30 +1.4
3,533,818 + AO353_15990 0.33 -1.5
3,533,821 + AO353_15990 0.33 +0.5
3,533,821 + AO353_15990 0.33 -0.2
3,533,821 + AO353_15990 0.33 +0.9
3,533,822 - AO353_15990 0.33 -1.4
3,533,822 - AO353_15990 0.33 +0.4
3,533,822 - AO353_15990 0.33 -0.4
3,533,822 - AO353_15990 0.33 -1.9
3,533,822 - AO353_15990 0.33 -0.9
3,533,822 - AO353_15990 0.33 -0.4
3,533,822 - AO353_15990 0.33 +1.7
3,533,854 + AO353_15990 0.36 +0.6
3,533,854 + AO353_15990 0.36 -0.5
3,533,854 + AO353_15990 0.36 +0.1
3,533,854 + AO353_15990 0.36 +0.6
3,533,854 + AO353_15990 0.36 +0.3
3,533,854 + AO353_15990 0.36 +1.0
3,533,854 + AO353_15990 0.36 -0.1
3,533,854 + AO353_15990 0.36 -0.1
3,533,855 - AO353_15990 0.36 -0.0
3,533,855 - AO353_15990 0.36 +0.5
3,533,855 - AO353_15990 0.36 +0.8
3,533,855 - AO353_15990 0.36 -1.1
3,533,855 - AO353_15990 0.36 +0.7
3,533,855 - AO353_15990 0.36 -0.2
3,533,855 - AO353_15990 0.36 -0.7
3,533,855 - AO353_15990 0.36 -1.1
3,533,858 - AO353_15990 0.36 +1.0
3,533,858 - AO353_15990 0.36 +3.2
3,533,887 - AO353_15990 0.38 -0.3
3,533,917 + AO353_15990 0.41 +0.4
3,533,917 + AO353_15990 0.41 -0.8
3,533,917 + AO353_15990 0.41 -1.5
3,533,918 - AO353_15990 0.41 +0.0
3,533,918 - AO353_15990 0.41 +0.8
3,533,918 - AO353_15990 0.41 -0.3
3,533,918 - AO353_15990 0.41 -1.7
3,533,924 - AO353_15990 0.41 -0.5
3,533,962 + AO353_15990 0.44 -0.1
3,533,962 + AO353_15990 0.44 -0.2
3,533,962 + AO353_15990 0.44 -0.1
3,533,962 + AO353_15990 0.44 +1.3
3,533,962 + AO353_15990 0.44 +0.3
3,533,962 + AO353_15990 0.44 -0.5
3,533,962 + AO353_15990 0.44 +1.5
3,533,963 - AO353_15990 0.44 +1.0
3,533,963 - AO353_15990 0.44 -1.2
3,533,963 - AO353_15990 0.44 -1.0
3,533,963 - AO353_15990 0.44 +0.5
3,533,963 - AO353_15990 0.44 +0.2
3,533,963 - AO353_15990 0.44 -0.5
3,533,963 - AO353_15990 0.44 -0.1
3,533,963 - AO353_15990 0.44 +0.3
3,533,967 + AO353_15990 0.45 -0.1
3,534,000 + AO353_15990 0.47 +0.4
3,534,037 + AO353_15990 0.50 +0.2
3,534,037 + AO353_15990 0.50 +0.5
3,534,037 + AO353_15990 0.50 +0.8
3,534,037 + AO353_15990 0.50 +0.0
3,534,037 + AO353_15990 0.50 -1.0
3,534,038 - AO353_15990 0.51 +1.8
3,534,038 - AO353_15990 0.51 -1.8
3,534,038 - AO353_15990 0.51 +1.5
3,534,038 - AO353_15990 0.51 -0.4
3,534,038 - AO353_15990 0.51 -0.1
3,534,038 - AO353_15990 0.51 -0.5
3,534,173 - AO353_15990 0.62 +1.0
3,534,173 - AO353_15990 0.62 +0.5
3,534,174 + AO353_15990 0.62 +0.5
3,534,211 + AO353_15990 0.65 +0.7
3,534,211 + AO353_15990 0.65 -0.4
3,534,278 - AO353_15990 0.70 -0.3
3,534,278 - AO353_15990 0.70 -0.3
3,534,278 - AO353_15990 0.70 +1.5
3,534,278 - AO353_15990 0.70 -0.2
3,534,343 + AO353_15990 0.75 -0.5
3,534,343 + AO353_15990 0.75 +1.2
3,534,344 - AO353_15990 0.76 -0.4
3,534,496 + AO353_15990 0.88 +0.0
3,534,496 + AO353_15990 0.88 +0.0
3,534,496 + AO353_15990 0.88 +0.5
3,534,496 + AO353_15990 0.88 +0.6
3,534,496 + AO353_15990 0.88 +0.8
3,534,496 + AO353_15990 0.88 -1.8
3,534,496 + AO353_15990 0.88 -1.0
3,534,497 - AO353_15990 0.88 -1.4
3,534,497 - AO353_15990 0.88 +0.8
3,534,497 - AO353_15990 0.88 -0.4
3,534,499 + AO353_15990 0.88 +0.7
3,534,499 + AO353_15990 0.88 +1.2
3,534,499 + AO353_15990 0.88 +1.3
3,534,499 + AO353_15990 0.88 -0.1
3,534,499 + AO353_15990 0.88 -1.4
3,534,499 + AO353_15990 0.88 -0.5
3,534,500 - AO353_15990 0.88 +1.5
3,534,500 - AO353_15990 0.88 +0.1
3,534,500 - AO353_15990 0.88 -0.0
3,534,500 - AO353_15990 0.88 +0.6
3,534,500 - AO353_15990 0.88 +1.3
3,534,500 - AO353_15990 0.88 +0.5
3,534,500 - AO353_15990 0.88 -1.2
3,534,500 - AO353_15990 0.88 +0.1
3,534,500 - AO353_15990 0.88 -0.6
3,534,500 - AO353_15990 0.88 +0.8
3,534,500 - AO353_15990 0.88 +0.2
3,534,505 + AO353_15990 0.89 -0.2
3,534,505 + AO353_15990 0.89 +0.1
3,534,505 + AO353_15990 0.89 -1.0
3,534,505 + AO353_15990 0.89 -0.1
3,534,505 + AO353_15990 0.89 +0.5
3,534,505 + AO353_15990 0.89 -1.7
3,534,505 + AO353_15990 0.89 +0.4
3,534,505 + AO353_15990 0.89 +0.4
3,534,505 + AO353_15990 0.89 +0.2
3,534,505 + AO353_15990 0.89 +0.1
3,534,505 + AO353_15990 0.89 +0.9
3,534,505 + AO353_15990 0.89 -1.1
3,534,505 + AO353_15990 0.89 -0.9
3,534,506 - AO353_15990 0.89 -0.1
3,534,506 - AO353_15990 0.89 -0.2
3,534,506 - AO353_15990 0.89 -0.3
3,534,506 - AO353_15990 0.89 +0.3
3,534,506 - AO353_15990 0.89 -2.7
3,534,506 - AO353_15990 0.89 -0.8
3,534,506 - AO353_15990 0.89 +0.0
3,534,506 - AO353_15990 0.89 -0.5
3,534,628 + -0.0
3,534,628 + -0.4
3,534,640 + +0.3
3,534,640 + +0.1
3,534,641 - +0.4
3,534,641 - -0.1
3,534,641 - -0.3
3,534,641 - -0.4
3,534,862 - -0.2
3,534,927 + -1.6
3,534,928 - -1.0
3,535,040 + AO353_15995 0.13 +0.4
3,535,040 + AO353_15995 0.13 -0.1
3,535,040 + AO353_15995 0.13 +0.1
3,535,040 + AO353_15995 0.13 +0.4
3,535,040 + AO353_15995 0.13 +0.1
3,535,040 + AO353_15995 0.13 +1.9
3,535,040 + AO353_15995 0.13 +0.5
3,535,040 + AO353_15995 0.13 -0.1
3,535,041 - AO353_15995 0.13 -0.0
3,535,041 - AO353_15995 0.13 -0.2
3,535,041 - AO353_15995 0.13 -1.1
3,535,041 - AO353_15995 0.13 +0.5
3,535,315 + AO353_15995 0.24 +0.8
3,535,315 + AO353_15995 0.24 -0.6
3,535,315 + AO353_15995 0.24 +2.4
3,535,315 + AO353_15995 0.24 -0.4
3,535,315 + AO353_15995 0.24 +0.6
3,535,315 + AO353_15995 0.24 -0.5
3,535,316 - AO353_15995 0.24 +0.8
3,535,316 - AO353_15995 0.24 -0.8
3,535,316 - AO353_15995 0.24 +0.3
3,535,316 - AO353_15995 0.24 -2.1
3,535,491 + AO353_15995 0.31 -0.5
3,535,492 - AO353_15995 0.31 +1.6
3,535,594 + AO353_15995 0.35 -0.5
3,535,595 - AO353_15995 0.35 +0.3

Or see this region's nucleotide sequence