Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00395

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00390 and AO353_00395 are separated by 210 nucleotidesAO353_00395 and AO353_00400 are separated by 278 nucleotides AO353_00390: AO353_00390 - pyridine nucleotide-disulfide oxidoreductase, at 71,011 to 72,405 _00390 AO353_00395: AO353_00395 - thiamine biosynthesis protein ApbE, at 72,616 to 73,602 _00395 AO353_00400: AO353_00400 - citrate-proton symporter, at 73,881 to 75,182 _00400 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1 2at 72.390 kb on - strandat 72.517 kb on + strandat 72.517 kb on + strandat 72.517 kb on + strandat 72.518 kb on - strandat 72.518 kb on - strandat 72.518 kb on - strandat 72.518 kb on - strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.519 kb on + strandat 72.520 kb on - strandat 72.520 kb on - strandat 72.520 kb on - strandat 72.520 kb on - strandat 72.520 kb on - strandat 72.520 kb on - strandat 72.543 kb on + strandat 72.561 kb on + strandat 72.561 kb on + strandat 72.561 kb on + strandat 72.562 kb on - strandat 72.562 kb on - strandat 72.567 kb on - strandat 72.581 kb on + strandat 72.581 kb on + strandat 72.581 kb on + strandat 72.582 kb on - strandat 72.582 kb on - strandat 72.582 kb on - strandat 72.613 kb on + strandat 72.613 kb on + strandat 72.613 kb on + strandat 72.613 kb on + strandat 72.614 kb on - strandat 72.617 kb on + strandat 72.617 kb on + strandat 72.617 kb on + strandat 72.617 kb on + strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.618 kb on - strandat 72.726 kb on - strand, within AO353_00395at 72.770 kb on - strand, within AO353_00395at 72.799 kb on - strand, within AO353_00395at 72.823 kb on - strand, within AO353_00395at 72.890 kb on + strand, within AO353_00395at 72.890 kb on + strand, within AO353_00395at 72.890 kb on + strand, within AO353_00395at 72.891 kb on - strand, within AO353_00395at 72.891 kb on - strand, within AO353_00395at 73.153 kb on + strand, within AO353_00395at 73.153 kb on + strand, within AO353_00395at 73.153 kb on + strand, within AO353_00395at 73.153 kb on + strand, within AO353_00395at 73.153 kb on + strand, within AO353_00395at 73.154 kb on - strand, within AO353_00395at 73.154 kb on - strand, within AO353_00395at 73.154 kb on - strand, within AO353_00395at 73.154 kb on - strand, within AO353_00395at 73.154 kb on - strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.182 kb on + strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.183 kb on - strand, within AO353_00395at 73.184 kb on + strand, within AO353_00395at 73.295 kb on + strand, within AO353_00395at 73.296 kb on - strand, within AO353_00395at 73.296 kb on - strand, within AO353_00395at 73.374 kb on + strand, within AO353_00395at 73.374 kb on + strand, within AO353_00395at 73.374 kb on + strand, within AO353_00395at 73.374 kb on + strand, within AO353_00395at 73.374 kb on + strand, within AO353_00395at 73.375 kb on - strand, within AO353_00395at 73.375 kb on - strand, within AO353_00395at 73.375 kb on - strand, within AO353_00395at 73.375 kb on - strand, within AO353_00395at 73.375 kb on - strand, within AO353_00395at 73.511 kb on + strandat 73.511 kb on + strandat 73.511 kb on + strandat 73.511 kb on + strandat 73.511 kb on + strandat 73.511 kb on + strandat 73.511 kb on + strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.512 kb on - strandat 73.523 kb on + strandat 73.523 kb on + strandat 73.523 kb on + strandat 73.524 kb on - strandat 73.524 kb on - strandat 73.685 kb on + strandat 73.722 kb on + strandat 73.722 kb on + strandat 73.722 kb on + strandat 73.722 kb on + strandat 73.722 kb on + strandat 73.722 kb on + strandat 73.723 kb on - strandat 73.723 kb on - strandat 73.723 kb on - strandat 73.724 kb on + strandat 73.743 kb on + strandat 73.743 kb on + strandat 73.744 kb on - strandat 73.744 kb on - strandat 73.744 kb on - strandat 73.747 kb on + strandat 73.747 kb on + strandat 73.747 kb on + strandat 73.747 kb on + strandat 73.747 kb on + strandat 73.747 kb on + strandat 73.747 kb on + strandat 73.748 kb on - strandat 73.748 kb on - strandat 73.748 kb on - strandat 73.748 kb on - strandat 73.748 kb on - strandat 73.748 kb on - strandat 73.748 kb on - strandat 73.777 kb on - strandat 73.777 kb on - strandat 73.825 kb on - strandat 73.851 kb on + strandat 73.851 kb on + strandat 73.851 kb on + strandat 73.851 kb on + strandat 73.851 kb on + strandat 73.851 kb on + strandat 73.852 kb on - strandat 73.852 kb on - strandat 73.852 kb on - strandat 73.854 kb on + strandat 73.854 kb on + strandat 73.855 kb on - strandat 73.855 kb on - strandat 73.855 kb on - strandat 73.872 kb on + strandat 73.872 kb on + strandat 73.872 kb on + strandat 73.872 kb on + strandat 73.873 kb on - strandat 73.873 kb on - strandat 73.873 kb on - strandat 73.939 kb on + strandat 73.940 kb on - strandat 73.940 kb on - strandat 73.962 kb on + strandat 73.971 kb on + strandat 73.971 kb on + strandat 73.971 kb on + strandat 73.971 kb on + strandat 73.971 kb on + strandat 73.971 kb on + strandat 73.972 kb on - strandat 73.972 kb on - strandat 73.972 kb on - strandat 73.972 kb on - strandat 73.972 kb on - strandat 74.187 kb on + strand, within AO353_00400at 74.283 kb on + strand, within AO353_00400at 74.283 kb on + strand, within AO353_00400at 74.284 kb on - strand, within AO353_00400at 74.522 kb on + strand, within AO353_00400at 74.522 kb on + strand, within AO353_00400at 74.523 kb on - strand, within AO353_00400

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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72,390 - -1.0
72,517 + +0.6
72,517 + -1.3
72,517 + -1.1
72,518 - -0.3
72,518 - +1.7
72,518 - +0.4
72,518 - -0.3
72,519 + +0.7
72,519 + -1.4
72,519 + +0.9
72,519 + -0.3
72,519 + -0.5
72,519 + +0.6
72,519 + -0.2
72,519 + +1.0
72,519 + -0.9
72,519 + -0.7
72,519 + +1.0
72,519 + +0.7
72,519 + -0.3
72,520 - +0.2
72,520 - +0.6
72,520 - -1.5
72,520 - -2.2
72,520 - +1.9
72,520 - -0.2
72,543 + -2.3
72,561 + -0.9
72,561 + -0.3
72,561 + -1.3
72,562 - +0.8
72,562 - +1.9
72,567 - -0.3
72,581 + -1.9
72,581 + +0.1
72,581 + +0.2
72,582 - -0.1
72,582 - -0.0
72,582 - +0.2
72,613 + -2.0
72,613 + +0.5
72,613 + -0.7
72,613 + -0.0
72,614 - -0.6
72,617 + -0.3
72,617 + -0.7
72,617 + +0.7
72,617 + +0.1
72,618 - +0.1
72,618 - -1.7
72,618 - -0.6
72,618 - -1.0
72,618 - +0.3
72,618 - -0.3
72,618 - +0.6
72,618 - +0.5
72,618 - -0.3
72,726 - AO353_00395 0.11 +0.7
72,770 - AO353_00395 0.16 +1.1
72,799 - AO353_00395 0.19 +0.2
72,823 - AO353_00395 0.21 -0.6
72,890 + AO353_00395 0.28 +1.7
72,890 + AO353_00395 0.28 +0.2
72,890 + AO353_00395 0.28 +1.2
72,891 - AO353_00395 0.28 +0.7
72,891 - AO353_00395 0.28 +0.1
73,153 + AO353_00395 0.54 -0.6
73,153 + AO353_00395 0.54 -0.9
73,153 + AO353_00395 0.54 -0.5
73,153 + AO353_00395 0.54 +1.1
73,153 + AO353_00395 0.54 +0.5
73,154 - AO353_00395 0.55 +0.2
73,154 - AO353_00395 0.55 -0.9
73,154 - AO353_00395 0.55 +0.8
73,154 - AO353_00395 0.55 +0.7
73,154 - AO353_00395 0.55 -0.7
73,182 + AO353_00395 0.57 -0.7
73,182 + AO353_00395 0.57 +1.1
73,182 + AO353_00395 0.57 +0.7
73,182 + AO353_00395 0.57 +1.0
73,182 + AO353_00395 0.57 +0.1
73,182 + AO353_00395 0.57 +0.5
73,182 + AO353_00395 0.57 +0.4
73,182 + AO353_00395 0.57 +1.9
73,182 + AO353_00395 0.57 +0.6
73,182 + AO353_00395 0.57 +0.6
73,182 + AO353_00395 0.57 +0.7
73,182 + AO353_00395 0.57 +0.6
73,182 + AO353_00395 0.57 -0.8
73,183 - AO353_00395 0.57 +0.9
73,183 - AO353_00395 0.57 -0.9
73,183 - AO353_00395 0.57 +0.5
73,183 - AO353_00395 0.57 +0.7
73,183 - AO353_00395 0.57 +1.2
73,183 - AO353_00395 0.57 +0.6
73,183 - AO353_00395 0.57 -0.2
73,183 - AO353_00395 0.57 -0.2
73,184 + AO353_00395 0.58 -1.5
73,295 + AO353_00395 0.69 +0.3
73,296 - AO353_00395 0.69 +0.1
73,296 - AO353_00395 0.69 -0.8
73,374 + AO353_00395 0.77 +1.7
73,374 + AO353_00395 0.77 -0.3
73,374 + AO353_00395 0.77 -0.5
73,374 + AO353_00395 0.77 -1.6
73,374 + AO353_00395 0.77 +0.8
73,375 - AO353_00395 0.77 -0.3
73,375 - AO353_00395 0.77 -0.6
73,375 - AO353_00395 0.77 -0.7
73,375 - AO353_00395 0.77 -0.9
73,375 - AO353_00395 0.77 +0.2
73,511 + +0.9
73,511 + -0.4
73,511 + -0.7
73,511 + -0.3
73,511 + +0.1
73,511 + -1.6
73,511 + -1.1
73,512 - +0.3
73,512 - -0.2
73,512 - -0.9
73,512 - +0.7
73,512 - +0.8
73,512 - -0.2
73,512 - -0.0
73,512 - -1.3
73,512 - +2.2
73,512 - +0.7
73,512 - +0.3
73,512 - +0.5
73,523 + -0.3
73,523 + -0.1
73,523 + -0.1
73,524 - +0.7
73,524 - +0.6
73,685 + -1.3
73,722 + +1.8
73,722 + +1.1
73,722 + +1.2
73,722 + -0.7
73,722 + -0.7
73,722 + +0.1
73,723 - -0.1
73,723 - +1.7
73,723 - -0.4
73,724 + +0.7
73,743 + -1.5
73,743 + +0.3
73,744 - +0.7
73,744 - +1.7
73,744 - -0.0
73,747 + +1.3
73,747 + +0.4
73,747 + +0.3
73,747 + +0.5
73,747 + +0.1
73,747 + +0.3
73,747 + +0.3
73,748 - -0.4
73,748 - -0.6
73,748 - -0.4
73,748 - -0.5
73,748 - +1.0
73,748 - -0.7
73,748 - -0.3
73,777 - +0.2
73,777 - +0.7
73,825 - -1.2
73,851 + +1.2
73,851 + -1.2
73,851 + +0.3
73,851 + +0.8
73,851 + +0.4
73,851 + -0.0
73,852 - -0.6
73,852 - +0.5
73,852 - -0.8
73,854 + +0.1
73,854 + -0.8
73,855 - +0.3
73,855 - +1.4
73,855 - +1.6
73,872 + -0.0
73,872 + -0.2
73,872 + +0.2
73,872 + -0.1
73,873 - -0.2
73,873 - +2.7
73,873 - +0.4
73,939 + +1.5
73,940 - -1.0
73,940 - -0.6
73,962 + -0.3
73,971 + -0.5
73,971 + -0.6
73,971 + -0.9
73,971 + +0.3
73,971 + +0.7
73,971 + -0.5
73,972 - +0.9
73,972 - -2.3
73,972 - -1.7
73,972 - +0.7
73,972 - -0.1
74,187 + AO353_00400 0.24 +1.0
74,283 + AO353_00400 0.31 -2.2
74,283 + AO353_00400 0.31 +0.1
74,284 - AO353_00400 0.31 +1.3
74,522 + AO353_00400 0.49 +0.1
74,522 + AO353_00400 0.49 -0.6
74,523 - AO353_00400 0.49 +1.2

Or see this region's nucleotide sequence