Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_459

Experiment: selenate 0.5 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_458 and Pf6N2E2_459 are separated by 174 nucleotidesPf6N2E2_459 and Pf6N2E2_460 are separated by 262 nucleotides Pf6N2E2_458 - Protein rarD, at 521,873 to 522,757 _458 Pf6N2E2_459 - Oxidoreductase, aldo/keto reductase family, at 522,932 to 523,945 _459 Pf6N2E2_460 - Glycerate kinase (EC 2.7.1.31), at 524,208 to 525,344 _460 Position (kb) 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 521.952 kb on + strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.953 kb on - strandat 521.953 kb on - strandat 521.953 kb on - strandat 522.027 kb on + strand, within Pf6N2E2_458at 522.027 kb on + strand, within Pf6N2E2_458at 522.027 kb on + strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.078 kb on + strand, within Pf6N2E2_458at 522.079 kb on - strand, within Pf6N2E2_458at 522.079 kb on - strand, within Pf6N2E2_458at 522.142 kb on - strand, within Pf6N2E2_458at 522.270 kb on + strand, within Pf6N2E2_458at 522.270 kb on + strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.328 kb on - strand, within Pf6N2E2_458at 522.328 kb on - strand, within Pf6N2E2_458at 522.381 kb on + strand, within Pf6N2E2_458at 522.382 kb on - strand, within Pf6N2E2_458at 522.382 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.468 kb on + strand, within Pf6N2E2_458at 522.469 kb on - strand, within Pf6N2E2_458at 522.530 kb on + strand, within Pf6N2E2_458at 522.531 kb on - strand, within Pf6N2E2_458at 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.700 kb on - strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.761 kb on + strandat 522.762 kb on - strandat 522.762 kb on - strandat 522.782 kb on + strandat 522.782 kb on + strandat 522.783 kb on - strandat 522.783 kb on - strandat 522.783 kb on - strandat 522.807 kb on + strandat 522.807 kb on + strandat 522.895 kb on + strandat 522.933 kb on + strandat 522.933 kb on + strandat 522.933 kb on + strandat 522.934 kb on - strandat 522.934 kb on - strandat 522.934 kb on - strandat 523.072 kb on - strand, within Pf6N2E2_459at 523.072 kb on - strand, within Pf6N2E2_459at 523.185 kb on + strand, within Pf6N2E2_459at 523.185 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.492 kb on - strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strandat 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.608 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.653 kb on - strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.788 kb on + strand, within Pf6N2E2_459at 523.939 kb on - strandat 524.103 kb on + strandat 524.104 kb on - strandat 524.204 kb on + strandat 524.204 kb on + strandat 524.205 kb on - strandat 524.205 kb on - strandat 524.207 kb on + strandat 524.207 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction selenate 0.5 M
remove
521,952 + +1.3
521,952 + +0.2
521,952 + +0.3
521,952 + +0.6
521,953 - -0.8
521,953 - +0.4
521,953 - -0.6
522,027 + Pf6N2E2_458 0.17 +0.3
522,027 + Pf6N2E2_458 0.17 -0.2
522,027 + Pf6N2E2_458 0.17 +1.3
522,028 - Pf6N2E2_458 0.18 -0.4
522,028 - Pf6N2E2_458 0.18 -1.0
522,028 - Pf6N2E2_458 0.18 +0.7
522,028 - Pf6N2E2_458 0.18 -2.0
522,078 + Pf6N2E2_458 0.23 -3.1
522,079 - Pf6N2E2_458 0.23 +0.1
522,079 - Pf6N2E2_458 0.23 +0.2
522,142 - Pf6N2E2_458 0.30 +0.0
522,270 + Pf6N2E2_458 0.45 +0.6
522,270 + Pf6N2E2_458 0.45 -0.4
522,271 - Pf6N2E2_458 0.45 -0.7
522,271 - Pf6N2E2_458 0.45 +0.3
522,271 - Pf6N2E2_458 0.45 +0.3
522,271 - Pf6N2E2_458 0.45 -0.4
522,328 - Pf6N2E2_458 0.51 -0.8
522,328 - Pf6N2E2_458 0.51 -0.2
522,381 + Pf6N2E2_458 0.57 -0.0
522,382 - Pf6N2E2_458 0.58 -0.8
522,382 - Pf6N2E2_458 0.58 -1.7
522,400 - Pf6N2E2_458 0.60 -0.1
522,400 - Pf6N2E2_458 0.60 +0.1
522,400 - Pf6N2E2_458 0.60 -0.5
522,468 + Pf6N2E2_458 0.67 +0.1
522,469 - Pf6N2E2_458 0.67 -0.6
522,530 + Pf6N2E2_458 0.74 -0.4
522,531 - Pf6N2E2_458 0.74 +0.5
522,696 + +0.8
522,696 + -1.0
522,696 + -0.8
522,696 + +0.8
522,696 + +0.7
522,696 + +0.2
522,696 + +0.2
522,696 + +0.7
522,697 - +0.4
522,697 - +0.3
522,697 - -0.6
522,697 - -0.0
522,697 - -1.4
522,697 - -0.3
522,699 + +0.2
522,699 + +0.8
522,699 + +0.3
522,699 + +1.0
522,700 - +0.8
522,702 + +0.4
522,702 + -0.1
522,702 + +0.2
522,702 + -0.4
522,703 - -1.5
522,703 - -0.1
522,703 - +0.9
522,703 - +0.2
522,703 - -0.2
522,761 + -0.2
522,762 - -0.1
522,762 - -0.6
522,782 + +0.1
522,782 + +0.1
522,783 - +1.1
522,783 - +1.0
522,783 - +0.7
522,807 + +0.6
522,807 + -0.8
522,895 + +0.4
522,933 + +0.5
522,933 + -0.6
522,933 + +0.2
522,934 - +0.2
522,934 - +1.3
522,934 - +1.3
523,072 - Pf6N2E2_459 0.14 +0.4
523,072 - Pf6N2E2_459 0.14 +0.0
523,185 + Pf6N2E2_459 0.25 +1.1
523,185 + Pf6N2E2_459 0.25 -0.9
523,356 + Pf6N2E2_459 0.42 +0.2
523,356 + Pf6N2E2_459 0.42 -0.5
523,357 - Pf6N2E2_459 0.42 -0.9
523,357 - Pf6N2E2_459 0.42 -0.4
523,357 - Pf6N2E2_459 0.42 -0.5
523,411 - Pf6N2E2_459 0.47 -0.6
523,411 - Pf6N2E2_459 0.47 -0.2
523,411 - Pf6N2E2_459 0.47 +0.8
523,411 - Pf6N2E2_459 0.47 -0.2
523,411 - Pf6N2E2_459 0.47 -0.1
523,492 - Pf6N2E2_459 0.55 +0.5
523,593 + Pf6N2E2_459 0.65 -1.1
523,593 + Pf6N2E2_459 0.65 -0.4
523,594 - Pf6N2E2_459 0.65 -0.5
523,594 - Pf6N2E2_459 0.65 -0.4
523,594 - +3.3
523,596 + Pf6N2E2_459 0.65 +0.9
523,596 + Pf6N2E2_459 0.65 +0.5
523,596 + Pf6N2E2_459 0.65 +0.1
523,596 + Pf6N2E2_459 0.65 -1.0
523,596 + Pf6N2E2_459 0.65 +0.4
523,596 + Pf6N2E2_459 0.65 +0.0
523,596 + Pf6N2E2_459 0.65 +0.3
523,596 + Pf6N2E2_459 0.65 -1.4
523,596 + Pf6N2E2_459 0.65 +0.8
523,596 + Pf6N2E2_459 0.65 -0.4
523,596 + Pf6N2E2_459 0.65 -0.9
523,596 + Pf6N2E2_459 0.65 -1.9
523,597 - Pf6N2E2_459 0.66 +1.0
523,597 - Pf6N2E2_459 0.66 -1.9
523,597 - Pf6N2E2_459 0.66 -0.3
523,597 - Pf6N2E2_459 0.66 -0.9
523,597 - Pf6N2E2_459 0.66 -0.1
523,597 - Pf6N2E2_459 0.66 -1.3
523,597 - Pf6N2E2_459 0.66 -1.1
523,597 - Pf6N2E2_459 0.66 -0.1
523,597 - Pf6N2E2_459 0.66 +0.1
523,597 - Pf6N2E2_459 0.66 +0.5
523,597 - Pf6N2E2_459 0.66 +0.2
523,608 + Pf6N2E2_459 0.67 +1.0
523,652 + Pf6N2E2_459 0.71 +0.0
523,652 + Pf6N2E2_459 0.71 +1.5
523,652 + Pf6N2E2_459 0.71 -1.7
523,652 + Pf6N2E2_459 0.71 -0.4
523,652 + Pf6N2E2_459 0.71 -1.3
523,653 - Pf6N2E2_459 0.71 -1.8
523,788 + Pf6N2E2_459 0.84 -0.4
523,788 + Pf6N2E2_459 0.84 -0.4
523,788 + Pf6N2E2_459 0.84 -0.9
523,939 - +0.6
524,103 + +0.4
524,104 - -0.7
524,204 + +0.3
524,204 + -0.2
524,205 - -0.3
524,205 - +0.5
524,207 + -2.2
524,207 + +1.3

Or see this region's nucleotide sequence