Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04825

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04820 and MMP_RS04825 are separated by 25 nucleotidesMMP_RS04825 and MMP_RS04830 are separated by 70 nucleotidesMMP_RS04830 and MMP_RS04835 are separated by 20 nucleotides MMP_RS04820: MMP_RS04820 - methyl-accepting chemotaxis protein, at 918,010 to 919,413 _RS04820 MMP_RS04825: MMP_RS04825 - protein-glutamate O-methyltransferase CheR, at 919,439 to 920,251 _RS04825 MMP_RS04830: MMP_RS04830 - chemotaxis protein CheC, at 920,322 to 920,930 _RS04830 MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640 _RS04835 Position (kb) 919 920 921Strain fitness (log2 ratio) -1 0 1at 918.450 kb on + strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.454 kb on + strand, within MMP_RS04820at 918.467 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.471 kb on + strand, within MMP_RS04820at 918.471 kb on + strand, within MMP_RS04820at 918.471 kb on + strand, within MMP_RS04820at 918.488 kb on - strand, within MMP_RS04820at 918.644 kb on - strand, within MMP_RS04820at 918.644 kb on - strand, within MMP_RS04820at 918.965 kb on - strand, within MMP_RS04820at 918.982 kb on + strand, within MMP_RS04820at 919.020 kb on - strand, within MMP_RS04820at 919.027 kb on + strand, within MMP_RS04820at 919.043 kb on - strand, within MMP_RS04820at 919.062 kb on - strand, within MMP_RS04820at 919.074 kb on + strand, within MMP_RS04820at 919.110 kb on - strand, within MMP_RS04820at 919.149 kb on + strand, within MMP_RS04820at 919.149 kb on + strand, within MMP_RS04820at 919.296 kb on + strandat 919.359 kb on + strandat 919.391 kb on - strandat 919.392 kb on + strandat 919.392 kb on + strandat 919.396 kb on + strandat 919.412 kb on + strandat 919.412 kb on + strandat 919.489 kb on - strandat 919.539 kb on + strand, within MMP_RS04825at 919.543 kb on + strand, within MMP_RS04825at 919.581 kb on + strand, within MMP_RS04825at 919.595 kb on + strand, within MMP_RS04825at 919.609 kb on + strand, within MMP_RS04825at 919.616 kb on + strand, within MMP_RS04825at 919.616 kb on + strand, within MMP_RS04825at 919.624 kb on - strand, within MMP_RS04825at 919.663 kb on - strand, within MMP_RS04825at 919.663 kb on - strand, within MMP_RS04825at 919.746 kb on - strand, within MMP_RS04825at 919.747 kb on + strand, within MMP_RS04825at 919.750 kb on - strand, within MMP_RS04825at 919.854 kb on + strand, within MMP_RS04825at 919.972 kb on - strand, within MMP_RS04825at 919.980 kb on + strand, within MMP_RS04825at 920.014 kb on + strand, within MMP_RS04825at 920.048 kb on - strand, within MMP_RS04825at 920.048 kb on - strand, within MMP_RS04825at 920.054 kb on + strand, within MMP_RS04825at 920.060 kb on + strand, within MMP_RS04825at 920.101 kb on + strand, within MMP_RS04825at 920.101 kb on + strand, within MMP_RS04825at 920.109 kb on - strand, within MMP_RS04825at 920.109 kb on - strand, within MMP_RS04825at 920.162 kb on - strand, within MMP_RS04825at 920.169 kb on - strand, within MMP_RS04825at 920.169 kb on - strand, within MMP_RS04825at 920.170 kb on + strandat 920.170 kb on + strandat 920.173 kb on - strandat 920.173 kb on - strandat 920.173 kb on - strandat 920.174 kb on + strandat 920.174 kb on + strandat 920.174 kb on + strandat 920.196 kb on + strandat 920.201 kb on - strandat 920.225 kb on + strandat 920.238 kb on - strandat 920.238 kb on - strandat 920.242 kb on - strandat 920.243 kb on + strandat 920.243 kb on + strandat 920.243 kb on + strandat 920.266 kb on - strandat 920.266 kb on - strandat 920.266 kb on - strandat 920.266 kb on - strandat 920.267 kb on + strandat 920.267 kb on + strandat 920.294 kb on + strandat 920.316 kb on - strandat 920.319 kb on - strandat 920.319 kb on - strandat 920.323 kb on - strandat 920.358 kb on - strandat 920.359 kb on + strandat 920.359 kb on + strandat 920.359 kb on + strandat 920.402 kb on - strand, within MMP_RS04830at 920.402 kb on - strand, within MMP_RS04830at 920.403 kb on + strand, within MMP_RS04830at 920.406 kb on - strand, within MMP_RS04830at 920.406 kb on - strand, within MMP_RS04830at 920.407 kb on + strand, within MMP_RS04830at 920.411 kb on - strand, within MMP_RS04830at 920.429 kb on - strand, within MMP_RS04830at 920.430 kb on + strand, within MMP_RS04830at 920.444 kb on - strand, within MMP_RS04830at 920.478 kb on + strand, within MMP_RS04830at 920.478 kb on + strand, within MMP_RS04830at 920.478 kb on + strand, within MMP_RS04830at 920.480 kb on - strand, within MMP_RS04830at 920.480 kb on - strand, within MMP_RS04830at 920.514 kb on - strand, within MMP_RS04830at 920.515 kb on + strand, within MMP_RS04830at 920.532 kb on - strand, within MMP_RS04830at 920.533 kb on + strand, within MMP_RS04830at 920.547 kb on - strand, within MMP_RS04830at 920.653 kb on + strand, within MMP_RS04830at 920.791 kb on - strand, within MMP_RS04830at 920.791 kb on - strand, within MMP_RS04830at 920.792 kb on + strand, within MMP_RS04830at 920.810 kb on - strand, within MMP_RS04830at 920.819 kb on - strand, within MMP_RS04830at 920.847 kb on + strand, within MMP_RS04830at 920.906 kb on - strandat 920.907 kb on + strandat 920.910 kb on - strandat 920.934 kb on + strandat 920.996 kb on - strandat 921.005 kb on - strandat 921.006 kb on + strandat 921.055 kb on - strand, within MMP_RS04835at 921.107 kb on - strand, within MMP_RS04835at 921.107 kb on - strand, within MMP_RS04835at 921.160 kb on - strand, within MMP_RS04835at 921.161 kb on + strand, within MMP_RS04835at 921.167 kb on + strand, within MMP_RS04835

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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918,450 + MMP_RS04820 0.31 +0.2
918,453 - MMP_RS04820 0.32 -0.1
918,453 - MMP_RS04820 0.32 -0.2
918,453 - MMP_RS04820 0.32 +0.0
918,453 - MMP_RS04820 0.32 -0.1
918,454 + MMP_RS04820 0.32 -0.2
918,467 - MMP_RS04820 0.33 +0.1
918,470 - MMP_RS04820 0.33 +0.2
918,470 - MMP_RS04820 0.33 +0.3
918,470 - MMP_RS04820 0.33 +0.1
918,470 - MMP_RS04820 0.33 -0.3
918,470 - MMP_RS04820 0.33 -0.2
918,471 + MMP_RS04820 0.33 +0.0
918,471 + MMP_RS04820 0.33 +0.1
918,471 + MMP_RS04820 0.33 -0.2
918,488 - MMP_RS04820 0.34 +0.2
918,644 - MMP_RS04820 0.45 +0.1
918,644 - MMP_RS04820 0.45 +0.2
918,965 - MMP_RS04820 0.68 +0.4
918,982 + MMP_RS04820 0.69 +0.3
919,020 - MMP_RS04820 0.72 +1.0
919,027 + MMP_RS04820 0.72 -0.0
919,043 - MMP_RS04820 0.74 -0.1
919,062 - MMP_RS04820 0.75 +0.2
919,074 + MMP_RS04820 0.76 -0.4
919,110 - MMP_RS04820 0.78 -0.1
919,149 + MMP_RS04820 0.81 -0.0
919,149 + MMP_RS04820 0.81 +0.1
919,296 + -0.4
919,359 + +0.3
919,391 - -0.1
919,392 + +0.3
919,392 + +0.4
919,396 + +0.0
919,412 + +0.2
919,412 + +0.2
919,489 - +0.5
919,539 + MMP_RS04825 0.12 +0.2
919,543 + MMP_RS04825 0.13 -0.2
919,581 + MMP_RS04825 0.17 +1.2
919,595 + MMP_RS04825 0.19 +0.7
919,609 + MMP_RS04825 0.21 -0.4
919,616 + MMP_RS04825 0.22 -0.5
919,616 + MMP_RS04825 0.22 +0.5
919,624 - MMP_RS04825 0.23 +0.1
919,663 - MMP_RS04825 0.28 +0.8
919,663 - MMP_RS04825 0.28 -0.3
919,746 - MMP_RS04825 0.38 +0.3
919,747 + MMP_RS04825 0.38 -0.0
919,750 - MMP_RS04825 0.38 -0.0
919,854 + MMP_RS04825 0.51 +0.3
919,972 - MMP_RS04825 0.66 +0.1
919,980 + MMP_RS04825 0.67 -0.0
920,014 + MMP_RS04825 0.71 +0.3
920,048 - MMP_RS04825 0.75 +0.0
920,048 - MMP_RS04825 0.75 +0.0
920,054 + MMP_RS04825 0.76 -0.3
920,060 + MMP_RS04825 0.76 -0.5
920,101 + MMP_RS04825 0.81 -0.2
920,101 + MMP_RS04825 0.81 +0.0
920,109 - MMP_RS04825 0.82 +0.3
920,109 - MMP_RS04825 0.82 -0.1
920,162 - MMP_RS04825 0.89 +0.2
920,169 - MMP_RS04825 0.90 +0.0
920,169 - MMP_RS04825 0.90 -0.7
920,170 + -0.2
920,170 + -0.0
920,173 - -0.0
920,173 - -0.1
920,173 - -0.2
920,174 + -0.3
920,174 + -0.1
920,174 + -0.1
920,196 + -0.1
920,201 - -0.2
920,225 + -0.2
920,238 - +0.2
920,238 - +0.3
920,242 - -0.4
920,243 + -0.2
920,243 + +0.3
920,243 + +0.5
920,266 - +0.0
920,266 - +0.5
920,266 - -0.3
920,266 - +0.0
920,267 + -0.2
920,267 + +0.1
920,294 + +0.3
920,316 - -0.1
920,319 - -0.3
920,319 - -0.1
920,323 - -0.2
920,358 - -0.4
920,359 + +0.0
920,359 + +0.3
920,359 + +0.4
920,402 - MMP_RS04830 0.13 -0.4
920,402 - MMP_RS04830 0.13 +0.4
920,403 + MMP_RS04830 0.13 +0.1
920,406 - MMP_RS04830 0.14 +0.0
920,406 - MMP_RS04830 0.14 -0.2
920,407 + MMP_RS04830 0.14 -0.1
920,411 - MMP_RS04830 0.15 -0.4
920,429 - MMP_RS04830 0.18 -0.1
920,430 + MMP_RS04830 0.18 +0.2
920,444 - MMP_RS04830 0.20 -0.0
920,478 + MMP_RS04830 0.26 +0.3
920,478 + MMP_RS04830 0.26 -0.1
920,478 + MMP_RS04830 0.26 -0.1
920,480 - MMP_RS04830 0.26 +0.1
920,480 - MMP_RS04830 0.26 +0.3
920,514 - MMP_RS04830 0.32 +0.1
920,515 + MMP_RS04830 0.32 +0.1
920,532 - MMP_RS04830 0.34 +0.2
920,533 + MMP_RS04830 0.35 +0.3
920,547 - MMP_RS04830 0.37 +0.1
920,653 + MMP_RS04830 0.54 +0.1
920,791 - MMP_RS04830 0.77 -0.0
920,791 - MMP_RS04830 0.77 +0.0
920,792 + MMP_RS04830 0.77 +0.2
920,810 - MMP_RS04830 0.80 -0.4
920,819 - MMP_RS04830 0.82 -0.5
920,847 + MMP_RS04830 0.86 -0.8
920,906 - +0.4
920,907 + +0.0
920,910 - +0.4
920,934 + +0.0
920,996 - -0.4
921,005 - +0.7
921,006 + -0.4
921,055 - MMP_RS04835 0.15 +0.1
921,107 - MMP_RS04835 0.23 -0.3
921,107 - MMP_RS04835 0.23 +0.1
921,160 - MMP_RS04835 0.30 +0.6
921,161 + MMP_RS04835 0.30 +0.2
921,167 + MMP_RS04835 0.31 +0.3

Or see this region's nucleotide sequence