Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04695 and MMP_RS04700 are separated by 80 nucleotides MMP_RS04700 and MMP_RS04705 are separated by 14 nucleotides MMP_RS04705 and MMP_RS04710 are separated by 29 nucleotides
MMP_RS04695: MMP_RS04695 - selenide water dikinase SelD, at 898,296 to 899,303
_RS04695
MMP_RS04700: MMP_RS04700 - hypothetical protein, at 899,384 to 899,962
_RS04700
MMP_RS04705: MMP_RS04705 - ribonuclease Z, at 899,977 to 900,903
_RS04705
MMP_RS04710: MMP_RS04710 - hypothetical protein, at 900,933 to 901,325
_RS04710
Position (kb) 899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 898.679 kb on - strand, within MMP_RS04695 at 898.998 kb on - strand, within MMP_RS04695 at 898.999 kb on + strand, within MMP_RS04695 at 898.999 kb on + strand, within MMP_RS04695 at 899.028 kb on - strand, within MMP_RS04695 at 899.029 kb on + strand, within MMP_RS04695 at 899.066 kb on + strand, within MMP_RS04695 at 899.067 kb on - strand, within MMP_RS04695 at 899.068 kb on + strand, within MMP_RS04695 at 899.068 kb on + strand, within MMP_RS04695 at 899.085 kb on + strand, within MMP_RS04695 at 899.236 kb on + strand at 899.245 kb on + strand at 899.276 kb on - strand at 899.355 kb on - strand at 899.355 kb on - strand at 899.366 kb on - strand at 899.366 kb on - strand at 899.366 kb on - strand at 899.366 kb on - strand at 899.367 kb on + strand at 899.367 kb on + strand at 899.368 kb on - strand at 899.368 kb on - strand at 899.368 kb on - strand at 899.369 kb on + strand at 899.375 kb on - strand at 899.376 kb on + strand at 899.376 kb on + strand at 899.376 kb on + strand at 899.385 kb on - strand at 899.385 kb on - strand at 899.385 kb on - strand at 899.386 kb on + strand at 899.386 kb on + strand at 899.418 kb on + strand at 899.418 kb on + strand at 899.420 kb on - strand at 899.558 kb on - strand, within MMP_RS04700 at 899.559 kb on + strand, within MMP_RS04700 at 899.564 kb on - strand, within MMP_RS04700 at 899.565 kb on + strand, within MMP_RS04700 at 899.571 kb on - strand, within MMP_RS04700 at 899.576 kb on - strand, within MMP_RS04700 at 899.581 kb on - strand, within MMP_RS04700 at 899.582 kb on + strand, within MMP_RS04700 at 899.693 kb on + strand, within MMP_RS04700 at 899.778 kb on - strand, within MMP_RS04700 at 899.779 kb on + strand, within MMP_RS04700 at 899.799 kb on + strand, within MMP_RS04700 at 899.799 kb on + strand, within MMP_RS04700 at 899.804 kb on - strand, within MMP_RS04700 at 899.805 kb on + strand, within MMP_RS04700 at 899.820 kb on + strand, within MMP_RS04700 at 899.824 kb on - strand, within MMP_RS04700 at 899.825 kb on + strand, within MMP_RS04700 at 899.865 kb on + strand, within MMP_RS04700 at 899.865 kb on + strand, within MMP_RS04700 at 899.912 kb on - strand at 899.913 kb on + strand at 899.917 kb on - strand at 899.917 kb on - strand at 899.918 kb on + strand at 899.918 kb on + strand at 900.074 kb on + strand at 900.265 kb on - strand at 900.298 kb on - strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.299 kb on + strand at 900.323 kb on + strand at 900.464 kb on - strand at 900.465 kb on + strand at 900.501 kb on - strand at 900.913 kb on - strand at 900.914 kb on + strand at 900.914 kb on + strand at 900.914 kb on + strand at 900.916 kb on + strand at 900.939 kb on - strand at 900.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 898,679 - MMP_RS04695 0.38 -0.5 898,998 - MMP_RS04695 0.70 -0.1 898,999 + MMP_RS04695 0.70 -0.5 898,999 + MMP_RS04695 0.70 +0.0 899,028 - MMP_RS04695 0.73 -0.4 899,029 + MMP_RS04695 0.73 +0.1 899,066 + MMP_RS04695 0.76 -0.4 899,067 - MMP_RS04695 0.76 -0.4 899,068 + MMP_RS04695 0.77 -0.1 899,068 + MMP_RS04695 0.77 -0.3 899,085 + MMP_RS04695 0.78 +0.0 899,236 + +0.4 899,245 + -0.6 899,276 - -0.4 899,355 - +0.0 899,355 - -0.2 899,366 - +0.4 899,366 - +0.4 899,366 - -0.1 899,366 - -0.1 899,367 + -0.1 899,367 + -0.2 899,368 - -0.3 899,368 - +0.1 899,368 - +0.6 899,369 + -0.2 899,375 - -0.0 899,376 + -0.5 899,376 + -0.1 899,376 + +0.1 899,385 - -0.5 899,385 - +0.0 899,385 - +0.3 899,386 + +0.1 899,386 + +0.5 899,418 + +0.4 899,418 + +0.4 899,420 - -0.4 899,558 - MMP_RS04700 0.30 +0.3 899,559 + MMP_RS04700 0.30 +0.3 899,564 - MMP_RS04700 0.31 +0.1 899,565 + MMP_RS04700 0.31 -0.1 899,571 - MMP_RS04700 0.32 -0.1 899,576 - MMP_RS04700 0.33 -0.2 899,581 - MMP_RS04700 0.34 +0.2 899,582 + MMP_RS04700 0.34 -0.0 899,693 + MMP_RS04700 0.53 +0.3 899,778 - MMP_RS04700 0.68 -0.2 899,779 + MMP_RS04700 0.68 +0.2 899,799 + MMP_RS04700 0.72 +1.4 899,799 + MMP_RS04700 0.72 -0.4 899,804 - MMP_RS04700 0.73 -0.0 899,805 + MMP_RS04700 0.73 +0.5 899,820 + MMP_RS04700 0.75 +0.0 899,824 - MMP_RS04700 0.76 +0.5 899,825 + MMP_RS04700 0.76 +0.0 899,865 + MMP_RS04700 0.83 -1.6 899,865 + MMP_RS04700 0.83 -0.3 899,912 - -0.1 899,913 + -0.5 899,917 - +0.1 899,917 - -0.1 899,918 + +0.3 899,918 + +0.4 900,074 + -1.5 900,265 - -1.1 900,298 - -0.7 900,299 + -1.9 900,299 + -1.3 900,299 + +0.1 900,299 + -1.0 900,299 + -2.6 900,299 + -1.3 900,323 + -0.6 900,464 - -1.8 900,465 + -1.8 900,501 - -0.9 900,913 - -3.8 900,914 + -1.4 900,914 + -1.7 900,914 + -1.3 900,916 + -2.6 900,939 - -0.8 900,940 + -0.9
Or see this region's nucleotide sequence