Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04510

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04505 and MMP_RS04510 are separated by 15 nucleotidesMMP_RS04510 and MMP_RS04515 are separated by 13 nucleotides MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683 _RS04505 MMP_RS04510: MMP_RS04510 - ABC transporter permease subunit, at 858,699 to 859,532 _RS04510 MMP_RS04515: MMP_RS04515 - betaine/proline/choline family ABC transporter ATP-binding protein, at 859,546 to 860,715 _RS04515 Position (kb) 858 859 860Strain fitness (log2 ratio) -1 0 1at 857.709 kb on - strandat 857.712 kb on + strandat 857.712 kb on + strandat 857.798 kb on + strandat 857.823 kb on - strandat 857.890 kb on - strand, within MMP_RS04505at 857.890 kb on - strand, within MMP_RS04505at 857.897 kb on + strand, within MMP_RS04505at 857.951 kb on + strand, within MMP_RS04505at 857.953 kb on + strand, within MMP_RS04505at 857.996 kb on + strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 858.018 kb on - strand, within MMP_RS04505at 858.019 kb on + strand, within MMP_RS04505at 858.090 kb on - strand, within MMP_RS04505at 858.091 kb on + strand, within MMP_RS04505at 858.091 kb on + strand, within MMP_RS04505at 858.147 kb on + strand, within MMP_RS04505at 858.213 kb on + strand, within MMP_RS04505at 858.291 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.310 kb on - strand, within MMP_RS04505at 858.311 kb on + strand, within MMP_RS04505at 858.314 kb on - strand, within MMP_RS04505at 858.351 kb on - strand, within MMP_RS04505at 858.351 kb on - strand, within MMP_RS04505at 858.352 kb on + strand, within MMP_RS04505at 858.352 kb on + strand, within MMP_RS04505at 858.429 kb on - strand, within MMP_RS04505at 858.464 kb on - strand, within MMP_RS04505at 858.464 kb on - strand, within MMP_RS04505at 858.540 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505at 858.697 kb on - strandat 858.759 kb on + strandat 858.794 kb on - strand, within MMP_RS04510at 858.795 kb on + strand, within MMP_RS04510at 858.816 kb on - strand, within MMP_RS04510at 858.946 kb on + strand, within MMP_RS04510at 859.115 kb on + strand, within MMP_RS04510at 859.115 kb on + strand, within MMP_RS04510at 859.141 kb on + strand, within MMP_RS04510at 859.170 kb on - strand, within MMP_RS04510at 859.171 kb on + strand, within MMP_RS04510at 859.191 kb on - strand, within MMP_RS04510at 859.292 kb on - strand, within MMP_RS04510at 859.295 kb on - strand, within MMP_RS04510at 859.353 kb on - strand, within MMP_RS04510at 859.354 kb on + strand, within MMP_RS04510at 859.386 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.431 kb on - strand, within MMP_RS04510at 859.432 kb on + strand, within MMP_RS04510at 859.435 kb on - strand, within MMP_RS04510at 859.436 kb on + strand, within MMP_RS04510at 859.467 kb on + strandat 859.467 kb on + strandat 859.517 kb on - strandat 859.548 kb on + strandat 859.548 kb on + strandat 859.557 kb on - strandat 859.563 kb on - strandat 859.587 kb on + strandat 859.613 kb on + strandat 859.673 kb on + strand, within MMP_RS04515at 859.689 kb on - strand, within MMP_RS04515at 859.690 kb on + strand, within MMP_RS04515at 859.690 kb on + strand, within MMP_RS04515at 859.758 kb on + strand, within MMP_RS04515at 859.777 kb on - strand, within MMP_RS04515at 859.777 kb on - strand, within MMP_RS04515at 859.778 kb on + strand, within MMP_RS04515at 859.781 kb on - strand, within MMP_RS04515at 859.782 kb on + strand, within MMP_RS04515at 859.799 kb on + strand, within MMP_RS04515at 859.839 kb on - strand, within MMP_RS04515at 859.839 kb on - strand, within MMP_RS04515at 859.842 kb on - strand, within MMP_RS04515at 859.843 kb on + strand, within MMP_RS04515at 860.047 kb on - strand, within MMP_RS04515at 860.153 kb on + strand, within MMP_RS04515at 860.167 kb on - strand, within MMP_RS04515at 860.391 kb on + strand, within MMP_RS04515at 860.401 kb on + strand, within MMP_RS04515at 860.491 kb on + strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.493 kb on - strand, within MMP_RS04515at 860.494 kb on + strand, within MMP_RS04515at 860.501 kb on + strand, within MMP_RS04515

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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857,709 - -0.3
857,712 + +0.1
857,712 + +0.0
857,798 + -0.1
857,823 - +0.3
857,890 - MMP_RS04505 0.11 +0.0
857,890 - MMP_RS04505 0.11 +0.9
857,897 + MMP_RS04505 0.11 +0.1
857,951 + MMP_RS04505 0.17 +0.0
857,953 + MMP_RS04505 0.18 -0.1
857,996 + MMP_RS04505 0.23 +0.2
857,997 - MMP_RS04505 0.23 +0.2
857,997 - MMP_RS04505 0.23 +0.1
857,997 - MMP_RS04505 0.23 -0.1
858,018 - MMP_RS04505 0.25 +0.0
858,019 + MMP_RS04505 0.25 -0.2
858,090 - MMP_RS04505 0.33 +0.3
858,091 + MMP_RS04505 0.33 -0.3
858,091 + MMP_RS04505 0.33 -0.2
858,147 + MMP_RS04505 0.40 -0.2
858,213 + MMP_RS04505 0.47 -0.1
858,291 - MMP_RS04505 0.56 +0.4
858,304 - MMP_RS04505 0.57 +0.3
858,304 - MMP_RS04505 0.57 -0.1
858,304 - MMP_RS04505 0.57 +0.1
858,304 - MMP_RS04505 0.57 +0.2
858,304 - MMP_RS04505 0.57 +0.0
858,304 - MMP_RS04505 0.57 +0.6
858,308 - MMP_RS04505 0.58 +0.5
858,308 - MMP_RS04505 0.58 -0.1
858,308 - MMP_RS04505 0.58 +0.1
858,308 - MMP_RS04505 0.58 +1.0
858,308 - MMP_RS04505 0.58 -0.5
858,308 - MMP_RS04505 0.58 +0.4
858,308 - MMP_RS04505 0.58 +0.4
858,309 + MMP_RS04505 0.58 +0.3
858,309 + MMP_RS04505 0.58 +0.2
858,309 + MMP_RS04505 0.58 -0.3
858,309 + MMP_RS04505 0.58 +0.4
858,310 - MMP_RS04505 0.58 +0.6
858,311 + MMP_RS04505 0.58 -0.4
858,314 - MMP_RS04505 0.58 +0.4
858,351 - MMP_RS04505 0.62 -0.4
858,351 - MMP_RS04505 0.62 +0.0
858,352 + MMP_RS04505 0.63 -0.5
858,352 + MMP_RS04505 0.63 +0.1
858,429 - MMP_RS04505 0.71 +0.4
858,464 - MMP_RS04505 0.75 +0.6
858,464 - MMP_RS04505 0.75 -0.1
858,540 + MMP_RS04505 0.84 +0.2
858,546 + MMP_RS04505 0.84 +0.1
858,546 + MMP_RS04505 0.84 -0.3
858,697 - +0.1
858,759 + +0.6
858,794 - MMP_RS04510 0.11 -0.2
858,795 + MMP_RS04510 0.12 -0.1
858,816 - MMP_RS04510 0.14 -0.1
858,946 + MMP_RS04510 0.30 -0.4
859,115 + MMP_RS04510 0.50 +1.0
859,115 + MMP_RS04510 0.50 +0.1
859,141 + MMP_RS04510 0.53 -0.3
859,170 - MMP_RS04510 0.56 -0.6
859,171 + MMP_RS04510 0.57 +0.2
859,191 - MMP_RS04510 0.59 +0.1
859,292 - MMP_RS04510 0.71 +0.3
859,295 - MMP_RS04510 0.71 -0.1
859,353 - MMP_RS04510 0.78 -0.1
859,354 + MMP_RS04510 0.79 +0.3
859,386 - MMP_RS04510 0.82 +0.1
859,431 - MMP_RS04510 0.88 +0.0
859,431 - MMP_RS04510 0.88 -0.2
859,431 - MMP_RS04510 0.88 -0.0
859,432 + MMP_RS04510 0.88 +0.5
859,435 - MMP_RS04510 0.88 +0.4
859,436 + MMP_RS04510 0.88 +0.2
859,467 + -0.0
859,467 + +0.2
859,517 - -0.2
859,548 + +0.4
859,548 + +0.1
859,557 - +0.6
859,563 - +0.5
859,587 + -0.2
859,613 + -0.4
859,673 + MMP_RS04515 0.11 +0.9
859,689 - MMP_RS04515 0.12 -0.0
859,690 + MMP_RS04515 0.12 +0.5
859,690 + MMP_RS04515 0.12 +0.1
859,758 + MMP_RS04515 0.18 +0.6
859,777 - MMP_RS04515 0.20 -0.2
859,777 - MMP_RS04515 0.20 +0.1
859,778 + MMP_RS04515 0.20 +0.6
859,781 - MMP_RS04515 0.20 +0.1
859,782 + MMP_RS04515 0.20 -0.1
859,799 + MMP_RS04515 0.22 -0.1
859,839 - MMP_RS04515 0.25 +0.1
859,839 - MMP_RS04515 0.25 +0.5
859,842 - MMP_RS04515 0.25 +0.1
859,843 + MMP_RS04515 0.25 +0.7
860,047 - MMP_RS04515 0.43 -0.1
860,153 + MMP_RS04515 0.52 +0.5
860,167 - MMP_RS04515 0.53 +0.3
860,391 + MMP_RS04515 0.72 -0.0
860,401 + MMP_RS04515 0.73 +0.0
860,491 + MMP_RS04515 0.81 +0.0
860,493 - MMP_RS04515 0.81 -0.2
860,493 - MMP_RS04515 0.81 -0.1
860,493 - MMP_RS04515 0.81 -1.1
860,493 - MMP_RS04515 0.81 +0.1
860,493 - MMP_RS04515 0.81 +0.4
860,494 + MMP_RS04515 0.81 +0.3
860,501 + MMP_RS04515 0.82 -0.2

Or see this region's nucleotide sequence