Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01430 and MMP_RS01435 are separated by 35 nucleotides MMP_RS01435 and MMP_RS01440 are separated by 39 nucleotides MMP_RS01440 and MMP_RS01445 are separated by 19 nucleotides MMP_RS01445 and MMP_RS01450 are separated by 13 nucleotides
MMP_RS01430: MMP_RS01430 - mechanosensitive ion channel family protein, at 264,845 to 265,900
_RS01430
MMP_RS01435: MMP_RS01435 - DMT family transporter, at 265,936 to 266,379
_RS01435
MMP_RS01440: MMP_RS01440 - NAAT family transporter, at 266,419 to 267,060
_RS01440
MMP_RS01445: MMP_RS01445 - hypothetical protein, at 267,080 to 267,796
_RS01445
MMP_RS01450: MMP_RS01450 - tRNA pseudouridine(38-40) synthase TruA, at 267,810 to 268,598
_RS01450
Position (kb) 266
267
268 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 265.495 kb on - strand, within MMP_RS01430 at 265.501 kb on - strand, within MMP_RS01430 at 265.502 kb on + strand, within MMP_RS01430 at 265.534 kb on - strand, within MMP_RS01430 at 265.535 kb on + strand, within MMP_RS01430 at 265.602 kb on - strand, within MMP_RS01430 at 265.603 kb on + strand, within MMP_RS01430 at 265.648 kb on + strand, within MMP_RS01430 at 265.881 kb on - strand at 265.881 kb on - strand at 265.882 kb on + strand at 265.883 kb on - strand at 265.884 kb on + strand at 265.884 kb on + strand at 266.003 kb on - strand, within MMP_RS01435 at 266.016 kb on + strand, within MMP_RS01435 at 266.141 kb on - strand, within MMP_RS01435 at 266.204 kb on - strand, within MMP_RS01435 at 266.325 kb on - strand, within MMP_RS01435 at 266.346 kb on + strand at 266.500 kb on - strand, within MMP_RS01440 at 266.932 kb on + strand, within MMP_RS01440 at 266.935 kb on - strand, within MMP_RS01440 at 266.935 kb on - strand, within MMP_RS01440 at 266.936 kb on + strand, within MMP_RS01440 at 266.971 kb on + strand, within MMP_RS01440 at 267.156 kb on - strand, within MMP_RS01445 at 267.161 kb on - strand, within MMP_RS01445 at 267.199 kb on - strand, within MMP_RS01445 at 267.307 kb on - strand, within MMP_RS01445 at 267.307 kb on - strand, within MMP_RS01445 at 267.441 kb on - strand, within MMP_RS01445 at 267.460 kb on - strand, within MMP_RS01445 at 267.506 kb on - strand, within MMP_RS01445 at 267.577 kb on + strand, within MMP_RS01445 at 267.702 kb on + strand, within MMP_RS01445 at 267.764 kb on - strand at 267.765 kb on + strand at 267.790 kb on + strand at 267.790 kb on + strand at 267.790 kb on + strand at 267.904 kb on - strand, within MMP_RS01450 at 267.904 kb on - strand, within MMP_RS01450 at 267.904 kb on - strand, within MMP_RS01450 at 267.905 kb on + strand, within MMP_RS01450 at 267.905 kb on + strand, within MMP_RS01450 at 267.926 kb on - strand, within MMP_RS01450 at 267.930 kb on + strand, within MMP_RS01450 at 267.988 kb on - strand, within MMP_RS01450 at 268.037 kb on - strand, within MMP_RS01450
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 265,495 - MMP_RS01430 0.62 -0.3 265,501 - MMP_RS01430 0.62 -0.2 265,502 + MMP_RS01430 0.62 +0.4 265,534 - MMP_RS01430 0.65 +0.0 265,535 + MMP_RS01430 0.65 -0.2 265,602 - MMP_RS01430 0.72 -0.2 265,603 + MMP_RS01430 0.72 +0.1 265,648 + MMP_RS01430 0.76 -0.4 265,881 - -0.8 265,881 - +0.0 265,882 + -0.2 265,883 - -4.1 265,884 + -4.5 265,884 + -3.8 266,003 - MMP_RS01435 0.15 -0.1 266,016 + MMP_RS01435 0.18 +0.6 266,141 - MMP_RS01435 0.46 +0.2 266,204 - MMP_RS01435 0.60 +0.6 266,325 - MMP_RS01435 0.88 -0.2 266,346 + +0.1 266,500 - MMP_RS01440 0.13 -0.1 266,932 + MMP_RS01440 0.80 +0.2 266,935 - MMP_RS01440 0.80 +0.4 266,935 - MMP_RS01440 0.80 +0.2 266,936 + MMP_RS01440 0.81 +0.3 266,971 + MMP_RS01440 0.86 -0.2 267,156 - MMP_RS01445 0.11 -0.5 267,161 - MMP_RS01445 0.11 -0.2 267,199 - MMP_RS01445 0.17 -0.1 267,307 - MMP_RS01445 0.32 -0.6 267,307 - MMP_RS01445 0.32 -0.3 267,441 - MMP_RS01445 0.50 +0.0 267,460 - MMP_RS01445 0.53 -0.2 267,506 - MMP_RS01445 0.59 -0.6 267,577 + MMP_RS01445 0.69 -0.3 267,702 + MMP_RS01445 0.87 +0.1 267,764 - -0.1 267,765 + -0.4 267,790 + -0.4 267,790 + -0.8 267,790 + -0.8 267,904 - MMP_RS01450 0.12 +0.1 267,904 - MMP_RS01450 0.12 +0.7 267,904 - MMP_RS01450 0.12 +0.1 267,905 + MMP_RS01450 0.12 +0.5 267,905 + MMP_RS01450 0.12 +0.0 267,926 - MMP_RS01450 0.15 +0.3 267,930 + MMP_RS01450 0.15 -0.8 267,988 - MMP_RS01450 0.23 -0.1 268,037 - MMP_RS01450 0.29 +0.0
Or see this region's nucleotide sequence