Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00650 and MMP_RS00655 are separated by 3 nucleotides MMP_RS00655 and MMP_RS00660 are separated by 7 nucleotides MMP_RS00660 and MMP_RS00665 are separated by 9 nucleotides MMP_RS00665 and MMP_RS00670 are separated by 33 nucleotides
MMP_RS00650: MMP_RS00650 - ABC transporter ATP-binding protein, at 119,023 to 119,991
_RS00650
MMP_RS00655: MMP_RS00655 - hypothetical protein, at 119,995 to 120,534
_RS00655
MMP_RS00660: MMP_RS00660 - alkaline phosphatase family protein, at 120,542 to 121,822
_RS00660
MMP_RS00665: MMP_RS00665 - hypothetical protein, at 121,832 to 122,641
_RS00665
MMP_RS00670: MMP_RS00670 - TIM barrel protein, at 122,675 to 123,331
_RS00670
Position (kb)
120
121
122 Strain fitness (log2 ratio)
-1
0
1 at 119.681 kb on + strand, within MMP_RS00650 at 119.748 kb on + strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.876 kb on + strand, within MMP_RS00650 at 119.888 kb on + strand, within MMP_RS00650 at 119.976 kb on - strand at 119.978 kb on - strand at 119.993 kb on - strand at 120.105 kb on - strand, within MMP_RS00655 at 120.247 kb on - strand, within MMP_RS00655 at 120.612 kb on - strand at 120.612 kb on - strand at 120.613 kb on + strand at 120.674 kb on - strand, within MMP_RS00660 at 120.674 kb on - strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.726 kb on + strand, within MMP_RS00660 at 120.726 kb on + strand, within MMP_RS00660 at 120.818 kb on + strand, within MMP_RS00660 at 120.905 kb on + strand, within MMP_RS00660 at 121.108 kb on - strand, within MMP_RS00660 at 121.129 kb on - strand, within MMP_RS00660 at 121.370 kb on - strand, within MMP_RS00660 at 121.406 kb on - strand, within MMP_RS00660 at 121.449 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.483 kb on - strand, within MMP_RS00660 at 121.548 kb on - strand, within MMP_RS00660 at 121.916 kb on + strand, within MMP_RS00665 at 122.121 kb on - strand, within MMP_RS00665 at 122.121 kb on - strand, within MMP_RS00665 at 122.237 kb on - strand, within MMP_RS00665 at 122.443 kb on - strand, within MMP_RS00665 at 122.596 kb on - strand at 122.600 kb on - strand at 122.607 kb on + strand at 122.615 kb on + strand at 122.651 kb on - strand at 122.651 kb on - strand at 122.652 kb on + strand at 122.655 kb on - strand at 122.661 kb on + strand at 122.666 kb on - strand at 122.667 kb on + strand at 122.671 kb on - strand at 122.698 kb on - strand at 122.699 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 119,681 + MMP_RS00650 0.68 -0.2 119,748 + MMP_RS00650 0.75 +0.5 119,875 - MMP_RS00650 0.88 -0.2 119,875 - MMP_RS00650 0.88 -0.7 119,876 + MMP_RS00650 0.88 +0.1 119,888 + MMP_RS00650 0.89 +0.0 119,976 - +0.4 119,978 - +0.1 119,993 - +1.4 120,105 - MMP_RS00655 0.20 +0.0 120,247 - MMP_RS00655 0.47 -0.3 120,612 - -0.2 120,612 - -0.5 120,613 + +0.3 120,674 - MMP_RS00660 0.10 +0.3 120,674 - MMP_RS00660 0.10 +0.1 120,675 + MMP_RS00660 0.10 -0.2 120,675 + MMP_RS00660 0.10 +0.1 120,675 + MMP_RS00660 0.10 +0.4 120,726 + MMP_RS00660 0.14 -0.1 120,726 + MMP_RS00660 0.14 +0.3 120,818 + MMP_RS00660 0.22 +0.0 120,905 + MMP_RS00660 0.28 +0.9 121,108 - MMP_RS00660 0.44 +0.3 121,129 - MMP_RS00660 0.46 +0.2 121,370 - MMP_RS00660 0.65 +0.1 121,406 - MMP_RS00660 0.67 +0.4 121,449 + MMP_RS00660 0.71 +0.6 121,478 + MMP_RS00660 0.73 +0.3 121,478 + MMP_RS00660 0.73 +0.0 121,483 - MMP_RS00660 0.73 +0.1 121,548 - MMP_RS00660 0.79 +0.1 121,916 + MMP_RS00665 0.10 +0.5 122,121 - MMP_RS00665 0.36 +0.3 122,121 - MMP_RS00665 0.36 -0.0 122,237 - MMP_RS00665 0.50 -0.0 122,443 - MMP_RS00665 0.75 +0.5 122,596 - -0.0 122,600 - +0.1 122,607 + -0.0 122,615 + +0.0 122,651 - -0.0 122,651 - -0.2 122,652 + +0.1 122,655 - -0.1 122,661 + +1.7 122,666 - -0.7 122,667 + -0.1 122,671 - +0.3 122,698 - +0.3 122,699 + +0.1
Or see this region's nucleotide sequence