Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22090

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22080 and BWI76_RS22085 overlap by 11 nucleotidesBWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotidesBWI76_RS22090 and BWI76_RS22095 are separated by 131 nucleotides BWI76_RS22080: BWI76_RS22080 - AzlC family protein, at 4,609,989 to 4,610,735 _RS22080 BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060 _RS22085 BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682 _RS22090 BWI76_RS22095: BWI76_RS22095 - multidrug export protein EmrA, at 4,611,814 to 4,612,986 _RS22095 Position (kb) 4611 4612Strain fitness (log2 ratio) -1 0 1at 4610.281 kb on - strand, within BWI76_RS22080at 4610.350 kb on + strand, within BWI76_RS22080at 4610.360 kb on - strand, within BWI76_RS22080at 4610.433 kb on + strand, within BWI76_RS22080at 4610.433 kb on + strand, within BWI76_RS22080at 4610.523 kb on + strand, within BWI76_RS22080at 4610.538 kb on - strand, within BWI76_RS22080at 4610.557 kb on - strand, within BWI76_RS22080at 4610.663 kb on + strandat 4610.697 kb on + strandat 4610.699 kb on - strandat 4610.710 kb on - strandat 4610.737 kb on + strandat 4610.964 kb on - strand, within BWI76_RS22085at 4611.016 kb on + strand, within BWI76_RS22085at 4611.016 kb on + strand, within BWI76_RS22085at 4611.504 kb on + strand, within BWI76_RS22090at 4611.570 kb on + strand, within BWI76_RS22090at 4611.615 kb on + strand, within BWI76_RS22090at 4611.683 kb on + strandat 4612.093 kb on - strandat 4612.204 kb on - strand, within BWI76_RS22095at 4612.390 kb on - strand, within BWI76_RS22095

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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4,610,281 - BWI76_RS22080 0.39 -0.1
4,610,350 + BWI76_RS22080 0.48 +0.0
4,610,360 - BWI76_RS22080 0.50 +1.1
4,610,433 + BWI76_RS22080 0.59 -0.5
4,610,433 + BWI76_RS22080 0.59 +0.4
4,610,523 + BWI76_RS22080 0.71 -0.7
4,610,538 - BWI76_RS22080 0.73 +1.3
4,610,557 - BWI76_RS22080 0.76 -0.2
4,610,663 + -0.0
4,610,697 + -0.1
4,610,699 - -0.3
4,610,710 - +0.6
4,610,737 + -0.5
4,610,964 - BWI76_RS22085 0.71 -0.2
4,611,016 + BWI76_RS22085 0.87 +1.0
4,611,016 + BWI76_RS22085 0.87 -0.5
4,611,504 + BWI76_RS22090 0.66 -1.2
4,611,570 + BWI76_RS22090 0.79 -0.9
4,611,615 + BWI76_RS22090 0.87 -0.7
4,611,683 + -0.3
4,612,093 - +1.4
4,612,204 - BWI76_RS22095 0.33 -0.5
4,612,390 - BWI76_RS22095 0.49 -0.4

Or see this region's nucleotide sequence