Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19555

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19550 and BWI76_RS19555 are separated by 17 nucleotidesBWI76_RS19555 and BWI76_RS19560 are separated by 165 nucleotides BWI76_RS19550: BWI76_RS19550 - phospho-cellobiase, at 4,086,231 to 4,087,625 _RS19550 BWI76_RS19555: BWI76_RS19555 - Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data), at 4,087,643 to 4,089,502 _RS19555 BWI76_RS19560: BWI76_RS19560 - beta-1,4-xylanase, at 4,089,668 to 4,090,501 _RS19560 Position (kb) 4087 4088 4089 4090Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4087.281 kb on - strand, within BWI76_RS19550at 4087.486 kb on + strandat 4087.523 kb on + strandat 4087.533 kb on + strandat 4087.574 kb on + strandat 4088.067 kb on - strand, within BWI76_RS19555at 4088.172 kb on - strand, within BWI76_RS19555at 4088.207 kb on + strand, within BWI76_RS19555at 4088.365 kb on - strand, within BWI76_RS19555at 4088.640 kb on + strand, within BWI76_RS19555at 4088.833 kb on + strand, within BWI76_RS19555at 4089.122 kb on + strand, within BWI76_RS19555at 4089.130 kb on + strand, within BWI76_RS19555at 4089.167 kb on - strand, within BWI76_RS19555at 4089.430 kb on + strandat 4089.438 kb on - strandat 4089.470 kb on + strandat 4089.479 kb on - strandat 4089.545 kb on - strandat 4089.782 kb on + strand, within BWI76_RS19560at 4089.866 kb on - strand, within BWI76_RS19560at 4089.985 kb on - strand, within BWI76_RS19560at 4090.013 kb on - strand, within BWI76_RS19560at 4090.071 kb on - strand, within BWI76_RS19560at 4090.120 kb on + strand, within BWI76_RS19560at 4090.156 kb on - strand, within BWI76_RS19560at 4090.224 kb on - strand, within BWI76_RS19560at 4090.303 kb on + strand, within BWI76_RS19560at 4090.432 kb on - strandat 4090.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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4,087,281 - BWI76_RS19550 0.75 -1.9
4,087,486 + -1.6
4,087,523 + -1.9
4,087,533 + -1.7
4,087,574 + -2.1
4,088,067 - BWI76_RS19555 0.23 -3.2
4,088,172 - BWI76_RS19555 0.28 -2.8
4,088,207 + BWI76_RS19555 0.30 -4.3
4,088,365 - BWI76_RS19555 0.39 -0.8
4,088,640 + BWI76_RS19555 0.54 -2.4
4,088,833 + BWI76_RS19555 0.64 -2.5
4,089,122 + BWI76_RS19555 0.80 -3.2
4,089,130 + BWI76_RS19555 0.80 -2.2
4,089,167 - BWI76_RS19555 0.82 -2.6
4,089,430 + -3.0
4,089,438 - -3.4
4,089,470 + -1.0
4,089,479 - -3.4
4,089,545 - +0.3
4,089,782 + BWI76_RS19560 0.14 -0.2
4,089,866 - BWI76_RS19560 0.24 -3.3
4,089,985 - BWI76_RS19560 0.38 -1.4
4,090,013 - BWI76_RS19560 0.41 -0.5
4,090,071 - BWI76_RS19560 0.48 -3.5
4,090,120 + BWI76_RS19560 0.54 -2.5
4,090,156 - BWI76_RS19560 0.59 -2.8
4,090,224 - BWI76_RS19560 0.67 -1.9
4,090,303 + BWI76_RS19560 0.76 -3.9
4,090,432 - -0.4
4,090,436 - -1.4

Or see this region's nucleotide sequence