Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19540 and BWI76_RS19545 are separated by 119 nucleotides BWI76_RS19545 and BWI76_RS19550 are separated by 96 nucleotides BWI76_RS19550 and BWI76_RS19555 are separated by 17 nucleotides
BWI76_RS19540: BWI76_RS19540 - multidrug transporter permease, at 4,083,838 to 4,085,280
_RS19540
BWI76_RS19545: BWI76_RS19545 - type 11 methyltransferase, at 4,085,400 to 4,086,134
_RS19545
BWI76_RS19550: BWI76_RS19550 - phospho-cellobiase, at 4,086,231 to 4,087,625
_RS19550
BWI76_RS19555: BWI76_RS19555 - Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data) , at 4,087,643 to 4,089,502
_RS19555
Position (kb)
4086
4087
4088 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4086.341 kb on + strand at 4086.397 kb on - strand, within BWI76_RS19550 at 4086.517 kb on + strand, within BWI76_RS19550 at 4086.517 kb on + strand, within BWI76_RS19550 at 4087.281 kb on - strand, within BWI76_RS19550 at 4087.486 kb on + strand at 4087.523 kb on + strand at 4087.533 kb on + strand at 4087.574 kb on + strand at 4088.067 kb on - strand, within BWI76_RS19555 at 4088.172 kb on - strand, within BWI76_RS19555 at 4088.207 kb on + strand, within BWI76_RS19555 at 4088.365 kb on - strand, within BWI76_RS19555
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,086,341 + -2.4 4,086,397 - BWI76_RS19550 0.12 -1.8 4,086,517 + BWI76_RS19550 0.21 -1.7 4,086,517 + BWI76_RS19550 0.21 -0.6 4,087,281 - BWI76_RS19550 0.75 -1.9 4,087,486 + -1.6 4,087,523 + -1.9 4,087,533 + -1.7 4,087,574 + -2.1 4,088,067 - BWI76_RS19555 0.23 -3.2 4,088,172 - BWI76_RS19555 0.28 -2.8 4,088,207 + BWI76_RS19555 0.30 -4.3 4,088,365 - BWI76_RS19555 0.39 -0.8
Or see this region's nucleotide sequence