Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18820

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18815 and BWI76_RS18820 are separated by 55 nucleotidesBWI76_RS18820 and BWI76_RS18825 are separated by 39 nucleotidesBWI76_RS18825 and BWI76_RS18830 are separated by 10 nucleotides BWI76_RS18815: BWI76_RS18815 - nitrogenase molybdenum-iron protein alpha chain, at 3,902,289 to 3,903,737 _RS18815 BWI76_RS18820: BWI76_RS18820 - nitrogenase molybdenum-iron protein subunit beta, at 3,903,793 to 3,905,355 _RS18820 BWI76_RS18825: BWI76_RS18825 - protein NifT, at 3,905,395 to 3,905,613 _RS18825 BWI76_RS18830: BWI76_RS18830 - protein NifY, at 3,905,624 to 3,906,286 _RS18830 Position (kb) 3903 3904 3905 3906Strain fitness (log2 ratio) -1 0 1at 3903.425 kb on - strand, within BWI76_RS18815at 3903.471 kb on - strand, within BWI76_RS18815at 3903.622 kb on + strandat 3903.641 kb on - strandat 3903.689 kb on - strandat 3903.864 kb on - strandat 3904.061 kb on + strand, within BWI76_RS18820at 3904.061 kb on + strand, within BWI76_RS18820at 3904.069 kb on - strand, within BWI76_RS18820at 3904.936 kb on + strand, within BWI76_RS18820at 3905.033 kb on - strand, within BWI76_RS18820at 3905.256 kb on - strandat 3905.274 kb on + strandat 3905.675 kb on + strandat 3905.848 kb on - strand, within BWI76_RS18830at 3905.885 kb on + strand, within BWI76_RS18830

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,903,425 - BWI76_RS18815 0.78 -0.2
3,903,471 - BWI76_RS18815 0.82 -0.6
3,903,622 + -0.0
3,903,641 - -0.1
3,903,689 - -0.4
3,903,864 - -0.0
3,904,061 + BWI76_RS18820 0.17 -1.4
3,904,061 + BWI76_RS18820 0.17 -1.3
3,904,069 - BWI76_RS18820 0.18 -1.1
3,904,936 + BWI76_RS18820 0.73 -0.4
3,905,033 - BWI76_RS18820 0.79 -0.2
3,905,256 - -0.6
3,905,274 + +0.9
3,905,675 + +0.3
3,905,848 - BWI76_RS18830 0.34 -0.1
3,905,885 + BWI76_RS18830 0.39 +0.1

Or see this region's nucleotide sequence