Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17195

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17185 and BWI76_RS17190 are separated by 19 nucleotidesBWI76_RS17190 and BWI76_RS17195 are separated by 211 nucleotidesBWI76_RS17195 and BWI76_RS17200 are separated by 58 nucleotidesBWI76_RS17200 and BWI76_RS17205 are separated by 32 nucleotides BWI76_RS17185: BWI76_RS17185 - fructosamine kinase family protein, at 3,561,425 to 3,562,297 _RS17185 BWI76_RS17190: BWI76_RS17190 - TonB system transport protein TonB, at 3,562,317 to 3,563,054 _RS17190 BWI76_RS17195: BWI76_RS17195 - hypothetical protein, at 3,563,266 to 3,563,562 _RS17195 BWI76_RS17200: BWI76_RS17200 - hypothetical protein, at 3,563,621 to 3,563,905 _RS17200 BWI76_RS17205: BWI76_RS17205 - cardiolipin synthase A, at 3,563,938 to 3,565,398 _RS17205 Position (kb) 3563 3564Strain fitness (log2 ratio) -1 0 1at 3562.548 kb on + strand, within BWI76_RS17190at 3562.960 kb on - strand, within BWI76_RS17190at 3562.965 kb on - strand, within BWI76_RS17190at 3563.466 kb on + strand, within BWI76_RS17195at 3563.639 kb on + strandat 3563.776 kb on - strand, within BWI76_RS17200at 3563.964 kb on - strandat 3563.964 kb on - strandat 3563.978 kb on - strandat 3564.296 kb on + strand, within BWI76_RS17205at 3564.342 kb on - strand, within BWI76_RS17205at 3564.389 kb on - strand, within BWI76_RS17205

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,562,548 + BWI76_RS17190 0.31 +0.1
3,562,960 - BWI76_RS17190 0.87 +0.9
3,562,965 - BWI76_RS17190 0.88 +0.4
3,563,466 + BWI76_RS17195 0.67 -0.9
3,563,639 + +1.7
3,563,776 - BWI76_RS17200 0.54 -0.4
3,563,964 - +0.1
3,563,964 - -0.0
3,563,978 - +0.2
3,564,296 + BWI76_RS17205 0.25 +0.6
3,564,342 - BWI76_RS17205 0.28 -0.0
3,564,389 - BWI76_RS17205 0.31 -0.1

Or see this region's nucleotide sequence