Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15685

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15670 and BWI76_RS15675 are separated by 69 nucleotidesBWI76_RS15675 and BWI76_RS15680 are separated by 111 nucleotidesBWI76_RS15680 and BWI76_RS15685 are separated by 85 nucleotidesBWI76_RS15685 and BWI76_RS15690 overlap by 50 nucleotidesBWI76_RS15690 and BWI76_RS15695 overlap by 4 nucleotidesBWI76_RS15695 and BWI76_RS15700 overlap by 4 nucleotides BWI76_RS15670: BWI76_RS15670 - hypothetical protein, at 3,274,750 to 3,274,950 _RS15670 BWI76_RS15675: BWI76_RS15675 - hypothetical protein, at 3,275,020 to 3,275,265 _RS15675 BWI76_RS15680: BWI76_RS15680 - hypothetical protein, at 3,275,377 to 3,275,562 _RS15680 BWI76_RS15685: BWI76_RS15685 - hypothetical protein, at 3,275,648 to 3,275,839 _RS15685 BWI76_RS15690: BWI76_RS15690 - hypothetical protein, at 3,275,790 to 3,276,065 _RS15690 BWI76_RS15695: BWI76_RS15695 - hypothetical protein, at 3,276,062 to 3,276,406 _RS15695 BWI76_RS15700: BWI76_RS15700 - hypothetical protein, at 3,276,403 to 3,276,945 _RS15700 Position (kb) 3275 3276Strain fitness (log2 ratio) -2 -1 0 1 2at 3274.867 kb on - strand, within BWI76_RS15670at 3274.872 kb on + strand, within BWI76_RS15670at 3274.872 kb on + strand, within BWI76_RS15670at 3274.894 kb on - strand, within BWI76_RS15670at 3275.005 kb on + strandat 3275.008 kb on - strandat 3275.165 kb on + strand, within BWI76_RS15675at 3275.186 kb on + strand, within BWI76_RS15675at 3275.194 kb on - strand, within BWI76_RS15675at 3275.194 kb on - strand, within BWI76_RS15675at 3275.194 kb on - strand, within BWI76_RS15675at 3275.221 kb on - strand, within BWI76_RS15675at 3275.221 kb on - strand, within BWI76_RS15675at 3275.278 kb on + strandat 3275.322 kb on - strandat 3275.491 kb on + strand, within BWI76_RS15680at 3275.514 kb on - strand, within BWI76_RS15680at 3275.533 kb on + strand, within BWI76_RS15680at 3275.611 kb on + strandat 3275.619 kb on - strandat 3275.676 kb on - strand, within BWI76_RS15685at 3275.808 kb on + strandat 3275.959 kb on + strand, within BWI76_RS15690at 3276.178 kb on + strand, within BWI76_RS15695at 3276.218 kb on - strand, within BWI76_RS15695at 3276.253 kb on - strandat 3276.255 kb on - strand, within BWI76_RS15695at 3276.538 kb on - strand, within BWI76_RS15700at 3276.543 kb on - strand, within BWI76_RS15700at 3276.606 kb on - strand, within BWI76_RS15700at 3276.636 kb on + strand, within BWI76_RS15700at 3276.659 kb on + strand, within BWI76_RS15700at 3276.826 kb on - strand, within BWI76_RS15700

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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3,274,867 - BWI76_RS15670 0.58 +0.2
3,274,872 + BWI76_RS15670 0.61 +0.5
3,274,872 + BWI76_RS15670 0.61 -0.8
3,274,894 - BWI76_RS15670 0.72 -0.0
3,275,005 + -2.1
3,275,008 - -0.1
3,275,165 + BWI76_RS15675 0.59 -0.3
3,275,186 + BWI76_RS15675 0.67 -0.4
3,275,194 - BWI76_RS15675 0.71 -1.8
3,275,194 - BWI76_RS15675 0.71 -0.1
3,275,194 - BWI76_RS15675 0.71 +0.3
3,275,221 - BWI76_RS15675 0.82 -0.8
3,275,221 - BWI76_RS15675 0.82 -1.0
3,275,278 + +0.1
3,275,322 - -0.9
3,275,491 + BWI76_RS15680 0.61 -0.1
3,275,514 - BWI76_RS15680 0.74 -0.9
3,275,533 + BWI76_RS15680 0.84 -1.0
3,275,611 + -1.3
3,275,619 - -1.8
3,275,676 - BWI76_RS15685 0.15 -0.9
3,275,808 + -0.2
3,275,959 + BWI76_RS15690 0.61 +0.0
3,276,178 + BWI76_RS15695 0.34 -0.3
3,276,218 - BWI76_RS15695 0.45 +0.6
3,276,253 - +2.3
3,276,255 - BWI76_RS15695 0.56 -0.6
3,276,538 - BWI76_RS15700 0.25 +0.3
3,276,543 - BWI76_RS15700 0.26 -0.4
3,276,606 - BWI76_RS15700 0.37 -0.6
3,276,636 + BWI76_RS15700 0.43 +0.2
3,276,659 + BWI76_RS15700 0.47 +0.3
3,276,826 - BWI76_RS15700 0.78 -0.4

Or see this region's nucleotide sequence