Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12135 and BWI76_RS12140 are separated by 248 nucleotides BWI76_RS12140 and BWI76_RS12145 overlap by 1 nucleotides BWI76_RS12145 and BWI76_RS12150 are separated by 550 nucleotides BWI76_RS12150 and BWI76_RS12155 are separated by 78 nucleotides
BWI76_RS12135: BWI76_RS12135 - C-5 cytosine-specific DNA methylase, at 2,543,775 to 2,545,757
_RS12135
BWI76_RS12140: BWI76_RS12140 - hypothetical protein, at 2,546,006 to 2,546,659
_RS12140
BWI76_RS12145: BWI76_RS12145 - hypothetical protein, at 2,546,659 to 2,547,765
_RS12145
BWI76_RS12150: BWI76_RS12150 - DNA damage-inducible protein I, at 2,548,316 to 2,548,549
_RS12150
BWI76_RS12155: BWI76_RS12155 - hypothetical protein, at 2,548,628 to 2,548,849
_RS12155
Position (kb)
2546
2547
2548 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2545.672 kb on + strand at 2545.672 kb on + strand at 2545.672 kb on + strand at 2545.672 kb on + strand at 2545.680 kb on - strand at 2545.681 kb on - strand at 2545.681 kb on - strand at 2545.704 kb on + strand at 2545.709 kb on + strand at 2545.709 kb on + strand at 2545.714 kb on + strand at 2545.714 kb on + strand at 2545.714 kb on + strand at 2545.714 kb on + strand at 2545.714 kb on + strand at 2545.717 kb on - strand at 2545.722 kb on - strand at 2545.728 kb on + strand at 2545.733 kb on + strand at 2545.738 kb on + strand at 2545.738 kb on + strand at 2545.741 kb on - strand at 2545.741 kb on - strand at 2545.746 kb on - strand at 2545.786 kb on + strand at 2545.811 kb on + strand at 2545.814 kb on - strand at 2545.814 kb on - strand at 2545.819 kb on - strand at 2545.824 kb on + strand at 2545.832 kb on - strand at 2545.840 kb on - strand at 2545.886 kb on + strand at 2545.886 kb on + strand at 2545.894 kb on - strand at 2545.894 kb on - strand at 2545.894 kb on - strand at 2545.894 kb on - strand at 2545.894 kb on - strand at 2545.894 kb on - strand at 2545.894 kb on - strand at 2545.925 kb on - strand at 2545.930 kb on - strand at 2545.930 kb on - strand at 2545.930 kb on - strand at 2546.823 kb on + strand, within BWI76_RS12145 at 2546.914 kb on - strand, within BWI76_RS12145 at 2547.568 kb on - strand, within BWI76_RS12145 at 2547.568 kb on - strand, within BWI76_RS12145 at 2547.788 kb on + strand at 2547.875 kb on + strand at 2547.879 kb on + strand at 2547.883 kb on + strand at 2547.884 kb on + strand at 2547.902 kb on - strand at 2547.909 kb on + strand at 2547.909 kb on + strand at 2547.909 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.920 kb on + strand at 2547.928 kb on - strand at 2547.928 kb on - strand at 2547.928 kb on - strand at 2547.928 kb on - strand at 2547.928 kb on - strand at 2547.928 kb on - strand at 2547.944 kb on + strand at 2547.959 kb on - strand at 2547.963 kb on - strand at 2547.969 kb on + strand at 2547.972 kb on + strand at 2547.977 kb on + strand at 2547.977 kb on + strand at 2547.977 kb on + strand at 2547.977 kb on + strand at 2547.977 kb on + strand at 2547.980 kb on - strand at 2547.985 kb on - strand at 2547.985 kb on - strand at 2547.990 kb on + strand at 2548.004 kb on - strand at 2548.004 kb on - strand at 2548.145 kb on + strand at 2548.145 kb on + strand at 2548.153 kb on - strand at 2548.306 kb on + strand at 2548.362 kb on + strand, within BWI76_RS12150 at 2548.373 kb on + strand, within BWI76_RS12150 at 2548.456 kb on + strand, within BWI76_RS12150 at 2548.457 kb on - strand, within BWI76_RS12150 at 2548.464 kb on - strand, within BWI76_RS12150 at 2548.471 kb on - strand, within BWI76_RS12150 at 2548.587 kb on + strand at 2548.608 kb on - strand at 2548.687 kb on - strand, within BWI76_RS12155 at 2548.687 kb on - strand, within BWI76_RS12155
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 2,545,672 + -0.1 2,545,672 + +0.3 2,545,672 + +0.5 2,545,672 + +0.4 2,545,680 - -1.1 2,545,681 - -0.4 2,545,681 - -0.9 2,545,704 + -0.1 2,545,709 + +0.1 2,545,709 + +1.2 2,545,714 + -0.0 2,545,714 + -0.8 2,545,714 + -1.2 2,545,714 + -0.4 2,545,714 + +0.4 2,545,717 - -1.0 2,545,722 - +0.6 2,545,728 + +0.1 2,545,733 + -0.2 2,545,738 + +0.4 2,545,738 + +0.2 2,545,741 - +0.1 2,545,741 - -1.2 2,545,746 - +1.6 2,545,786 + -0.7 2,545,811 + +0.1 2,545,814 - +0.2 2,545,814 - -0.6 2,545,819 - -0.0 2,545,824 + -1.3 2,545,832 - +0.4 2,545,840 - -0.3 2,545,886 + +0.9 2,545,886 + -1.0 2,545,894 - +0.1 2,545,894 - +0.2 2,545,894 - +1.8 2,545,894 - -0.1 2,545,894 - +0.5 2,545,894 - -1.0 2,545,894 - +0.1 2,545,925 - -0.1 2,545,930 - +0.1 2,545,930 - +1.2 2,545,930 - -0.3 2,546,823 + BWI76_RS12145 0.15 -0.2 2,546,914 - BWI76_RS12145 0.23 -0.2 2,547,568 - BWI76_RS12145 0.82 -2.5 2,547,568 - BWI76_RS12145 0.82 -2.1 2,547,788 + -0.6 2,547,875 + -0.5 2,547,879 + -0.5 2,547,883 + -0.1 2,547,884 + +0.6 2,547,902 - +1.0 2,547,909 + -1.1 2,547,909 + +0.5 2,547,909 + +0.5 2,547,920 + -0.3 2,547,920 + -0.2 2,547,920 + -0.0 2,547,920 + -0.4 2,547,920 + +0.3 2,547,920 + -0.1 2,547,920 + -0.5 2,547,920 + -0.5 2,547,920 + +0.7 2,547,920 + +0.5 2,547,920 + +0.3 2,547,920 + -1.1 2,547,920 + +0.0 2,547,920 + -0.2 2,547,920 + +0.8 2,547,928 - -1.4 2,547,928 - -1.4 2,547,928 - -0.1 2,547,928 - +0.1 2,547,928 - -0.2 2,547,928 - -0.1 2,547,944 + -0.1 2,547,959 - -0.6 2,547,963 - +0.3 2,547,969 + -0.7 2,547,972 + -0.3 2,547,977 + +0.3 2,547,977 + -0.7 2,547,977 + -0.0 2,547,977 + -0.1 2,547,977 + -0.0 2,547,980 - -0.1 2,547,985 - +0.2 2,547,985 - -0.0 2,547,990 + -0.8 2,548,004 - +0.2 2,548,004 - -0.0 2,548,145 + +0.2 2,548,145 + -0.8 2,548,153 - +0.2 2,548,306 + -0.3 2,548,362 + BWI76_RS12150 0.20 +0.1 2,548,373 + BWI76_RS12150 0.24 -0.6 2,548,456 + BWI76_RS12150 0.60 +0.1 2,548,457 - BWI76_RS12150 0.60 +1.0 2,548,464 - BWI76_RS12150 0.63 -0.0 2,548,471 - BWI76_RS12150 0.66 +1.2 2,548,587 + +0.0 2,548,608 - +0.2 2,548,687 - BWI76_RS12155 0.27 -0.4 2,548,687 - BWI76_RS12155 0.27 -0.4
Or see this region's nucleotide sequence