Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08665

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08660 and BWI76_RS08665 are separated by 221 nucleotidesBWI76_RS08665 and BWI76_RS08670 are separated by 60 nucleotidesBWI76_RS08670 and BWI76_RS08675 are separated by 134 nucleotides BWI76_RS08660: BWI76_RS08660 - pyridoxal phosphatase, at 1,825,847 to 1,826,665 _RS08660 BWI76_RS08665: BWI76_RS08665 - 6-phosphogluconolactonase, at 1,826,887 to 1,827,882 _RS08665 BWI76_RS08670: BWI76_RS08670 - N-acetyltransferase, at 1,827,943 to 1,828,419 _RS08670 BWI76_RS08675: BWI76_RS08675 - GntR family transcriptional regulator, at 1,828,554 to 1,830,023 _RS08675 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -1 0 1at 1825.928 kb on - strandat 1826.051 kb on + strand, within BWI76_RS08660at 1826.065 kb on - strand, within BWI76_RS08660at 1826.127 kb on + strand, within BWI76_RS08660at 1826.205 kb on + strand, within BWI76_RS08660at 1826.205 kb on + strand, within BWI76_RS08660at 1826.351 kb on - strand, within BWI76_RS08660at 1826.544 kb on + strand, within BWI76_RS08660at 1826.647 kb on - strandat 1826.709 kb on - strandat 1826.714 kb on + strandat 1826.714 kb on + strandat 1827.049 kb on + strand, within BWI76_RS08665at 1827.097 kb on + strand, within BWI76_RS08665at 1827.097 kb on + strand, within BWI76_RS08665at 1827.200 kb on + strand, within BWI76_RS08665at 1827.543 kb on - strand, within BWI76_RS08665at 1827.612 kb on + strand, within BWI76_RS08665at 1827.730 kb on - strand, within BWI76_RS08665at 1827.779 kb on + strand, within BWI76_RS08665at 1828.018 kb on - strand, within BWI76_RS08670at 1828.042 kb on - strand, within BWI76_RS08670at 1828.240 kb on - strand, within BWI76_RS08670at 1828.240 kb on - strand, within BWI76_RS08670at 1828.298 kb on - strand, within BWI76_RS08670at 1828.450 kb on + strandat 1828.450 kb on + strandat 1828.614 kb on + strandat 1828.632 kb on - strandat 1828.642 kb on - strandat 1828.705 kb on - strand, within BWI76_RS08675at 1828.755 kb on + strand, within BWI76_RS08675

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,825,928 - -0.3
1,826,051 + BWI76_RS08660 0.25 -0.2
1,826,065 - BWI76_RS08660 0.27 +0.4
1,826,127 + BWI76_RS08660 0.34 +0.6
1,826,205 + BWI76_RS08660 0.44 +0.5
1,826,205 + BWI76_RS08660 0.44 +0.2
1,826,351 - BWI76_RS08660 0.62 -0.4
1,826,544 + BWI76_RS08660 0.85 +0.4
1,826,647 - -0.4
1,826,709 - -0.3
1,826,714 + -0.6
1,826,714 + +0.8
1,827,049 + BWI76_RS08665 0.16 -1.1
1,827,097 + BWI76_RS08665 0.21 -0.8
1,827,097 + BWI76_RS08665 0.21 -0.9
1,827,200 + BWI76_RS08665 0.31 -0.9
1,827,543 - BWI76_RS08665 0.66 -0.7
1,827,612 + BWI76_RS08665 0.73 -1.3
1,827,730 - BWI76_RS08665 0.85 -0.8
1,827,779 + BWI76_RS08665 0.90 -0.3
1,828,018 - BWI76_RS08670 0.16 +0.1
1,828,042 - BWI76_RS08670 0.21 -0.0
1,828,240 - BWI76_RS08670 0.62 -0.3
1,828,240 - BWI76_RS08670 0.62 -0.9
1,828,298 - BWI76_RS08670 0.74 -0.3
1,828,450 + +0.6
1,828,450 + -0.5
1,828,614 + +0.7
1,828,632 - +0.1
1,828,642 - -0.4
1,828,705 - BWI76_RS08675 0.10 -0.6
1,828,755 + BWI76_RS08675 0.14 +0.1

Or see this region's nucleotide sequence