Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04680

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04675 and BWI76_RS04680 overlap by 1 nucleotidesBWI76_RS04680 and BWI76_RS04685 are separated by 95 nucleotidesBWI76_RS04685 and BWI76_RS04690 are separated by 621 nucleotides BWI76_RS04675: BWI76_RS04675 - 3-isopropylmalate dehydrogenase, at 975,088 to 976,179 _RS04675 BWI76_RS04680: BWI76_RS04680 - 2-isopropylmalate synthase, at 976,179 to 977,750 _RS04680 BWI76_RS04685: BWI76_RS04685 - putative leucine operon leader peptide, at 977,846 to 977,932 _RS04685 BWI76_RS04690: BWI76_RS04690 - transcriptional regulator LeuO, at 978,554 to 979,504 _RS04690 Position (kb) 976 977 978Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 975.438 kb on + strand, within BWI76_RS04675at 975.473 kb on + strand, within BWI76_RS04675at 975.788 kb on - strand, within BWI76_RS04675at 975.833 kb on - strand, within BWI76_RS04675at 975.841 kb on - strand, within BWI76_RS04675at 975.899 kb on + strand, within BWI76_RS04675at 975.900 kb on - strand, within BWI76_RS04675at 976.189 kb on + strandat 976.321 kb on - strandat 976.321 kb on - strandat 976.368 kb on - strand, within BWI76_RS04680at 976.375 kb on + strand, within BWI76_RS04680at 976.383 kb on - strand, within BWI76_RS04680at 976.388 kb on - strand, within BWI76_RS04680at 976.423 kb on - strand, within BWI76_RS04680at 976.517 kb on + strand, within BWI76_RS04680at 976.628 kb on + strand, within BWI76_RS04680at 976.696 kb on - strand, within BWI76_RS04680at 976.775 kb on + strand, within BWI76_RS04680at 976.807 kb on - strand, within BWI76_RS04680at 976.858 kb on + strand, within BWI76_RS04680at 976.895 kb on - strand, within BWI76_RS04680at 976.918 kb on + strand, within BWI76_RS04680at 977.079 kb on - strand, within BWI76_RS04680at 977.084 kb on - strand, within BWI76_RS04680at 977.091 kb on + strand, within BWI76_RS04680at 977.104 kb on - strand, within BWI76_RS04680at 977.135 kb on - strand, within BWI76_RS04680at 977.172 kb on + strand, within BWI76_RS04680at 977.222 kb on + strand, within BWI76_RS04680at 977.222 kb on + strand, within BWI76_RS04680at 977.234 kb on - strand, within BWI76_RS04680at 977.361 kb on - strand, within BWI76_RS04680at 977.361 kb on - strand, within BWI76_RS04680at 977.450 kb on + strand, within BWI76_RS04680at 977.550 kb on + strand, within BWI76_RS04680at 977.550 kb on + strand, within BWI76_RS04680at 977.571 kb on + strand, within BWI76_RS04680at 977.572 kb on - strand, within BWI76_RS04680at 977.579 kb on - strand, within BWI76_RS04680at 977.627 kb on + strandat 977.627 kb on + strandat 977.632 kb on + strandat 977.686 kb on - strandat 977.688 kb on + strandat 977.688 kb on + strandat 977.702 kb on + strandat 977.707 kb on - strandat 977.707 kb on - strandat 977.710 kb on - strandat 977.712 kb on + strandat 977.712 kb on + strandat 977.720 kb on - strandat 977.720 kb on - strandat 977.760 kb on - strandat 977.760 kb on - strandat 977.769 kb on + strandat 977.771 kb on + strandat 977.777 kb on - strandat 977.781 kb on - strandat 977.820 kb on + strandat 977.844 kb on + strandat 977.859 kb on + strand, within BWI76_RS04685at 977.866 kb on + strand, within BWI76_RS04685at 977.866 kb on + strand, within BWI76_RS04685at 977.874 kb on - strand, within BWI76_RS04685at 977.899 kb on + strand, within BWI76_RS04685at 977.899 kb on + strand, within BWI76_RS04685at 977.899 kb on + strand, within BWI76_RS04685at 977.899 kb on + strand, within BWI76_RS04685at 977.899 kb on - strand, within BWI76_RS04685at 977.899 kb on - strand, within BWI76_RS04685at 977.907 kb on - strand, within BWI76_RS04685at 977.907 kb on - strand, within BWI76_RS04685at 977.907 kb on - strand, within BWI76_RS04685at 977.907 kb on - strand, within BWI76_RS04685at 977.907 kb on - strand, within BWI76_RS04685at 977.950 kb on - strandat 977.950 kb on - strandat 977.970 kb on - strandat 977.970 kb on - strandat 977.970 kb on - strandat 977.970 kb on - strandat 977.977 kb on + strandat 977.977 kb on + strandat 977.977 kb on + strandat 977.985 kb on - strandat 977.990 kb on + strandat 977.991 kb on + strandat 977.997 kb on + strandat 978.004 kb on - strandat 978.005 kb on - strandat 978.047 kb on + strandat 978.055 kb on - strandat 978.057 kb on - strandat 978.155 kb on - strandat 978.167 kb on - strandat 978.169 kb on + strandat 978.169 kb on + strandat 978.177 kb on - strandat 978.177 kb on - strandat 978.178 kb on - strandat 978.221 kb on - strandat 978.271 kb on + strandat 978.271 kb on + strandat 978.271 kb on + strandat 978.271 kb on + strandat 978.279 kb on - strandat 978.377 kb on + strandat 978.377 kb on + strandat 978.377 kb on + strandat 978.431 kb on + strandat 978.431 kb on - strandat 978.548 kb on - strandat 978.550 kb on - strandat 978.585 kb on + strandat 978.596 kb on + strandat 978.600 kb on + strandat 978.601 kb on + strandat 978.601 kb on + strandat 978.601 kb on + strandat 978.601 kb on + strandat 978.601 kb on + strandat 978.601 kb on + strandat 978.606 kb on + strandat 978.606 kb on + strandat 978.608 kb on + strandat 978.608 kb on + strandat 978.608 kb on + strandat 978.608 kb on + strandat 978.608 kb on - strandat 978.608 kb on - strandat 978.609 kb on - strandat 978.609 kb on - strandat 978.616 kb on - strandat 978.616 kb on - strandat 978.627 kb on + strandat 978.627 kb on + strandat 978.627 kb on + strandat 978.627 kb on + strandat 978.627 kb on + strandat 978.635 kb on - strandat 978.693 kb on + strand, within BWI76_RS04690at 978.700 kb on - strand, within BWI76_RS04690at 978.700 kb on - strand, within BWI76_RS04690at 978.701 kb on - strand, within BWI76_RS04690at 978.703 kb on + strand, within BWI76_RS04690at 978.713 kb on + strandat 978.713 kb on + strand, within BWI76_RS04690at 978.713 kb on + strand, within BWI76_RS04690at 978.713 kb on + strand, within BWI76_RS04690at 978.721 kb on - strand, within BWI76_RS04690at 978.728 kb on - strand, within BWI76_RS04690at 978.728 kb on - strand, within BWI76_RS04690

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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975,438 + BWI76_RS04675 0.32 -2.1
975,473 + BWI76_RS04675 0.35 -3.2
975,788 - BWI76_RS04675 0.64 -4.6
975,833 - BWI76_RS04675 0.68 -4.4
975,841 - BWI76_RS04675 0.69 -2.6
975,899 + BWI76_RS04675 0.74 -3.1
975,900 - BWI76_RS04675 0.74 -2.9
976,189 + -4.7
976,321 - -3.6
976,321 - -2.6
976,368 - BWI76_RS04680 0.12 -3.2
976,375 + BWI76_RS04680 0.12 -3.7
976,383 - BWI76_RS04680 0.13 -3.8
976,388 - BWI76_RS04680 0.13 -0.0
976,423 - BWI76_RS04680 0.16 -0.8
976,517 + BWI76_RS04680 0.22 -2.1
976,628 + BWI76_RS04680 0.29 -3.0
976,696 - BWI76_RS04680 0.33 -4.4
976,775 + BWI76_RS04680 0.38 -4.3
976,807 - BWI76_RS04680 0.40 -1.8
976,858 + BWI76_RS04680 0.43 -3.0
976,895 - BWI76_RS04680 0.46 -3.0
976,918 + BWI76_RS04680 0.47 -2.4
977,079 - BWI76_RS04680 0.57 -1.0
977,084 - BWI76_RS04680 0.58 -3.2
977,091 + BWI76_RS04680 0.58 -1.0
977,104 - BWI76_RS04680 0.59 -5.9
977,135 - BWI76_RS04680 0.61 +0.6
977,172 + BWI76_RS04680 0.63 -1.2
977,222 + BWI76_RS04680 0.66 -2.9
977,222 + BWI76_RS04680 0.66 -5.2
977,234 - BWI76_RS04680 0.67 -2.0
977,361 - BWI76_RS04680 0.75 -2.8
977,361 - BWI76_RS04680 0.75 -0.2
977,450 + BWI76_RS04680 0.81 -2.8
977,550 + BWI76_RS04680 0.87 -3.4
977,550 + BWI76_RS04680 0.87 -2.3
977,571 + BWI76_RS04680 0.89 -2.6
977,572 - BWI76_RS04680 0.89 -3.1
977,579 - BWI76_RS04680 0.89 -3.9
977,627 + -1.7
977,627 + -3.2
977,632 + -2.1
977,686 - -4.5
977,688 + -3.4
977,688 + -1.4
977,702 + -4.6
977,707 - -2.9
977,707 - -0.4
977,710 - -3.1
977,712 + -2.8
977,712 + -3.3
977,720 - -0.9
977,720 - -0.0
977,760 - -2.7
977,760 - -2.2
977,769 + -2.7
977,771 + -3.8
977,777 - -2.4
977,781 - -1.4
977,820 + -1.0
977,844 + -2.4
977,859 + BWI76_RS04685 0.15 -3.8
977,866 + BWI76_RS04685 0.23 -3.0
977,866 + BWI76_RS04685 0.23 -0.0
977,874 - BWI76_RS04685 0.32 -4.9
977,899 + BWI76_RS04685 0.61 -4.1
977,899 + BWI76_RS04685 0.61 -2.3
977,899 + BWI76_RS04685 0.61 -1.3
977,899 + BWI76_RS04685 0.61 -4.7
977,899 - BWI76_RS04685 0.61 -3.9
977,899 - BWI76_RS04685 0.61 -0.4
977,907 - BWI76_RS04685 0.70 +1.6
977,907 - BWI76_RS04685 0.70 -3.1
977,907 - BWI76_RS04685 0.70 -3.2
977,907 - BWI76_RS04685 0.70 -1.9
977,907 - BWI76_RS04685 0.70 -2.1
977,950 - +0.3
977,950 - -1.3
977,970 - -0.8
977,970 - -2.2
977,970 - -0.9
977,970 - -1.2
977,977 + -0.0
977,977 + -3.7
977,977 + -1.2
977,985 - -0.8
977,990 + -0.0
977,991 + -0.3
977,997 + -0.3
978,004 - -0.3
978,005 - +0.2
978,047 + +0.7
978,055 - +0.2
978,057 - +0.8
978,155 - +1.9
978,167 - -0.6
978,169 + +0.4
978,169 + -1.0
978,177 - +0.6
978,177 - +0.6
978,178 - -0.4
978,221 - +0.4
978,271 + +1.0
978,271 + -0.3
978,271 + +0.9
978,271 + +1.3
978,279 - +0.6
978,377 + -0.3
978,377 + -0.2
978,377 + -1.1
978,431 + -2.7
978,431 - +0.8
978,548 - +0.3
978,550 - +0.4
978,585 + +1.3
978,596 + +3.6
978,600 + +0.3
978,601 + +1.1
978,601 + -0.1
978,601 + +1.1
978,601 + -0.3
978,601 + +0.4
978,601 + +0.7
978,606 + +0.5
978,606 + -0.3
978,608 + -3.0
978,608 + +0.2
978,608 + +0.3
978,608 + +0.4
978,608 - +0.3
978,608 - +0.9
978,609 - +0.7
978,609 - +0.7
978,616 - -0.2
978,616 - -0.1
978,627 + -0.2
978,627 + -1.0
978,627 + +0.2
978,627 + -0.3
978,627 + +0.4
978,635 - +0.6
978,693 + BWI76_RS04690 0.15 +0.3
978,700 - BWI76_RS04690 0.15 -0.0
978,700 - BWI76_RS04690 0.15 -0.6
978,701 - BWI76_RS04690 0.15 +0.3
978,703 + BWI76_RS04690 0.16 -0.0
978,713 + +3.2
978,713 + BWI76_RS04690 0.17 +0.4
978,713 + BWI76_RS04690 0.17 -0.0
978,713 + BWI76_RS04690 0.17 +2.3
978,721 - BWI76_RS04690 0.18 +0.2
978,728 - BWI76_RS04690 0.18 +0.6
978,728 - BWI76_RS04690 0.18 +0.0

Or see this region's nucleotide sequence