Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00845

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00840 and BWI76_RS00845 are separated by 184 nucleotidesBWI76_RS00845 and BWI76_RS00850 are separated by 9 nucleotidesBWI76_RS00850 and BWI76_RS00855 are separated by 77 nucleotides BWI76_RS00840: BWI76_RS00840 - acetylornithine deacetylase, at 173,585 to 174,736 _RS00840 BWI76_RS00845: BWI76_RS00845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 174,921 to 175,925 _RS00845 BWI76_RS00850: BWI76_RS00850 - acetylglutamate kinase, at 175,935 to 176,708 _RS00850 BWI76_RS00855: BWI76_RS00855 - argininosuccinate lyase, at 176,786 to 178,159 _RS00855 Position (kb) 174 175 176Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 173.960 kb on - strand, within BWI76_RS00840at 173.960 kb on - strand, within BWI76_RS00840at 174.257 kb on + strand, within BWI76_RS00840at 174.352 kb on + strand, within BWI76_RS00840at 174.432 kb on - strand, within BWI76_RS00840at 174.432 kb on - strand, within BWI76_RS00840at 174.445 kb on + strand, within BWI76_RS00840at 174.445 kb on + strand, within BWI76_RS00840at 174.453 kb on - strand, within BWI76_RS00840at 174.497 kb on - strand, within BWI76_RS00840at 174.674 kb on + strandat 174.707 kb on - strandat 174.966 kb on + strandat 174.996 kb on + strandat 175.207 kb on + strand, within BWI76_RS00845at 175.291 kb on + strand, within BWI76_RS00845at 175.291 kb on + strand, within BWI76_RS00845at 175.329 kb on - strand, within BWI76_RS00845at 175.483 kb on - strand, within BWI76_RS00845at 175.498 kb on - strand, within BWI76_RS00845at 175.593 kb on + strand, within BWI76_RS00845at 175.709 kb on - strand, within BWI76_RS00845at 175.714 kb on - strand, within BWI76_RS00845at 175.739 kb on + strand, within BWI76_RS00845at 175.775 kb on - strand, within BWI76_RS00845at 175.803 kb on + strand, within BWI76_RS00845at 175.825 kb on - strandat 176.129 kb on + strand, within BWI76_RS00850at 176.171 kb on + strand, within BWI76_RS00850at 176.235 kb on - strand, within BWI76_RS00850at 176.263 kb on + strand, within BWI76_RS00850at 176.350 kb on + strand, within BWI76_RS00850at 176.350 kb on + strand, within BWI76_RS00850at 176.358 kb on - strand, within BWI76_RS00850at 176.583 kb on - strand, within BWI76_RS00850at 176.612 kb on - strand, within BWI76_RS00850at 176.652 kb on + strandat 176.655 kb on - strandat 176.669 kb on + strandat 176.669 kb on + strandat 176.737 kb on + strandat 176.861 kb on + strandat 176.876 kb on + strandat 176.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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173,960 - BWI76_RS00840 0.33 -0.6
173,960 - BWI76_RS00840 0.33 -0.5
174,257 + BWI76_RS00840 0.58 -0.1
174,352 + BWI76_RS00840 0.67 -0.5
174,432 - BWI76_RS00840 0.74 +0.5
174,432 - BWI76_RS00840 0.74 -0.1
174,445 + BWI76_RS00840 0.75 +0.0
174,445 + BWI76_RS00840 0.75 +0.0
174,453 - BWI76_RS00840 0.75 +0.3
174,497 - BWI76_RS00840 0.79 -0.3
174,674 + -0.6
174,707 - +0.5
174,966 + -5.3
174,996 + -3.1
175,207 + BWI76_RS00845 0.28 -4.3
175,291 + BWI76_RS00845 0.37 -4.8
175,291 + BWI76_RS00845 0.37 -1.0
175,329 - BWI76_RS00845 0.41 -2.1
175,483 - BWI76_RS00845 0.56 -3.7
175,498 - BWI76_RS00845 0.57 -0.8
175,593 + BWI76_RS00845 0.67 -5.2
175,709 - BWI76_RS00845 0.78 -3.9
175,714 - BWI76_RS00845 0.79 -4.4
175,739 + BWI76_RS00845 0.81 -1.0
175,775 - BWI76_RS00845 0.85 -2.4
175,803 + BWI76_RS00845 0.88 -4.0
175,825 - -4.0
176,129 + BWI76_RS00850 0.25 -2.1
176,171 + BWI76_RS00850 0.30 -2.8
176,235 - BWI76_RS00850 0.39 -4.1
176,263 + BWI76_RS00850 0.42 -4.4
176,350 + BWI76_RS00850 0.54 -4.7
176,350 + BWI76_RS00850 0.54 -2.4
176,358 - BWI76_RS00850 0.55 -3.2
176,583 - BWI76_RS00850 0.84 -3.4
176,612 - BWI76_RS00850 0.87 -5.1
176,652 + -0.2
176,655 - -3.8
176,669 + -4.4
176,669 + -3.5
176,737 + +0.5
176,861 + -1.4
176,876 + -6.4
176,917 + -2.2

Or see this region's nucleotide sequence