Experiment: Gly-Glu (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_29115 and AO353_29120 are separated by 165 nucleotides AO353_29120 and AO353_29125 overlap by 4 nucleotides AO353_29125 and AO353_29130 are separated by 22 nucleotides
AO353_29115: AO353_29115 - enamine deaminase RidA, at 6,326,456 to 6,326,872
_29115
AO353_29120: AO353_29120 - fimbrial assembly protein FimA, at 6,327,038 to 6,327,715
_29120
AO353_29125: AO353_29125 - acetylornithine deacetylase, at 6,327,712 to 6,328,860
_29125
AO353_29130: AO353_29130 - LysR family transcriptional regulator, at 6,328,883 to 6,329,794
_29130
Position (kb)
6327
6328
6329 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.717 kb on + strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.718 kb on - strand, within AO353_29115 at 6326.751 kb on - strand, within AO353_29115 at 6326.881 kb on - strand at 6326.916 kb on + strand at 6326.916 kb on + strand at 6326.917 kb on - strand at 6327.267 kb on - strand, within AO353_29120 at 6327.418 kb on - strand, within AO353_29120 at 6327.651 kb on - strand at 6327.651 kb on - strand at 6327.651 kb on - strand at 6327.805 kb on + strand at 6327.805 kb on + strand at 6327.806 kb on - strand at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.841 kb on + strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.842 kb on - strand, within AO353_29125 at 6327.997 kb on + strand, within AO353_29125 at 6327.998 kb on - strand, within AO353_29125 at 6327.998 kb on - strand, within AO353_29125 at 6327.998 kb on - strand, within AO353_29125 at 6328.027 kb on + strand, within AO353_29125 at 6328.027 kb on + strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.028 kb on - strand, within AO353_29125 at 6328.092 kb on + strand, within AO353_29125 at 6328.106 kb on - strand, within AO353_29125 at 6328.312 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.534 kb on + strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.535 kb on - strand, within AO353_29125 at 6328.550 kb on + strand, within AO353_29125 at 6328.550 kb on + strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.551 kb on - strand, within AO353_29125 at 6328.613 kb on - strand, within AO353_29125 at 6328.888 kb on + strand at 6328.888 kb on + strand at 6328.888 kb on + strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.889 kb on - strand at 6328.890 kb on + strand at 6328.890 kb on + strand at 6328.891 kb on - strand at 6328.891 kb on - strand at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.034 kb on + strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.035 kb on - strand, within AO353_29130 at 6329.040 kb on + strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.041 kb on - strand, within AO353_29130 at 6329.175 kb on + strand, within AO353_29130 at 6329.175 kb on + strand, within AO353_29130 at 6329.175 kb on + strand, within AO353_29130 at 6329.175 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.176 kb on - strand, within AO353_29130 at 6329.283 kb on + strand, within AO353_29130 at 6329.284 kb on - strand at 6329.284 kb on - strand, within AO353_29130 at 6329.589 kb on + strand, within AO353_29130 at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.709 kb on + strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.710 kb on - strand at 6329.763 kb on + strand at 6329.763 kb on + strand at 6329.764 kb on - strand at 6329.764 kb on - strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.784 kb on + strand at 6329.785 kb on - strand at 6329.785 kb on - strand at 6329.785 kb on - strand at 6329.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (N) remove 6,326,717 + AO353_29115 0.63 +0.2 6,326,717 + AO353_29115 0.63 -0.4 6,326,717 + AO353_29115 0.63 +1.6 6,326,717 + AO353_29115 0.63 +0.9 6,326,717 + AO353_29115 0.63 -1.6 6,326,717 + AO353_29115 0.63 +0.4 6,326,717 + AO353_29115 0.63 -0.2 6,326,717 + AO353_29115 0.63 -0.9 6,326,717 + AO353_29115 0.63 +0.2 6,326,717 + AO353_29115 0.63 +0.1 6,326,717 + AO353_29115 0.63 -0.5 6,326,718 - AO353_29115 0.63 -0.6 6,326,718 - AO353_29115 0.63 +0.9 6,326,718 - AO353_29115 0.63 +0.5 6,326,718 - AO353_29115 0.63 -1.5 6,326,751 - AO353_29115 0.71 -0.1 6,326,881 - -0.4 6,326,916 + -0.9 6,326,916 + -0.7 6,326,917 - +1.8 6,327,267 - AO353_29120 0.34 -1.3 6,327,418 - AO353_29120 0.56 +0.6 6,327,651 - -1.4 6,327,651 - +0.5 6,327,651 - -1.3 6,327,805 + -0.9 6,327,805 + -0.9 6,327,806 - -0.1 6,327,841 + AO353_29125 0.11 -1.9 6,327,841 + AO353_29125 0.11 +0.4 6,327,841 + AO353_29125 0.11 +1.5 6,327,841 + AO353_29125 0.11 -0.8 6,327,842 - AO353_29125 0.11 +0.5 6,327,842 - AO353_29125 0.11 -1.1 6,327,842 - AO353_29125 0.11 -0.1 6,327,842 - AO353_29125 0.11 +0.9 6,327,842 - AO353_29125 0.11 -1.3 6,327,997 + AO353_29125 0.25 +0.2 6,327,998 - AO353_29125 0.25 +0.0 6,327,998 - AO353_29125 0.25 -1.0 6,327,998 - AO353_29125 0.25 +0.5 6,328,027 + AO353_29125 0.27 +0.7 6,328,027 + AO353_29125 0.27 -0.4 6,328,028 - AO353_29125 0.28 -1.3 6,328,028 - AO353_29125 0.28 +1.7 6,328,028 - AO353_29125 0.28 -0.4 6,328,028 - AO353_29125 0.28 -1.2 6,328,028 - AO353_29125 0.28 -0.3 6,328,028 - AO353_29125 0.28 -0.8 6,328,092 + AO353_29125 0.33 -2.7 6,328,106 - AO353_29125 0.34 -0.9 6,328,312 + AO353_29125 0.52 -0.4 6,328,534 + AO353_29125 0.72 -0.3 6,328,534 + AO353_29125 0.72 -0.8 6,328,534 + AO353_29125 0.72 +0.1 6,328,534 + AO353_29125 0.72 -0.9 6,328,535 - AO353_29125 0.72 +0.8 6,328,535 - AO353_29125 0.72 -1.9 6,328,535 - AO353_29125 0.72 +0.5 6,328,535 - AO353_29125 0.72 +0.9 6,328,535 - AO353_29125 0.72 -0.7 6,328,550 + AO353_29125 0.73 -0.5 6,328,550 + AO353_29125 0.73 +0.1 6,328,551 - AO353_29125 0.73 -0.7 6,328,551 - AO353_29125 0.73 +0.7 6,328,551 - AO353_29125 0.73 -1.2 6,328,551 - AO353_29125 0.73 -0.2 6,328,551 - AO353_29125 0.73 +0.2 6,328,613 - AO353_29125 0.78 -2.1 6,328,888 + +0.5 6,328,888 + +0.1 6,328,888 + +2.1 6,328,889 - -1.0 6,328,889 - +1.3 6,328,889 - -0.9 6,328,889 - +0.6 6,328,889 - +1.1 6,328,889 - +0.1 6,328,890 + -0.5 6,328,890 + +0.6 6,328,891 - +0.9 6,328,891 - -0.2 6,329,034 + AO353_29130 0.17 -0.6 6,329,034 + AO353_29130 0.17 -0.4 6,329,034 + AO353_29130 0.17 -0.1 6,329,034 + AO353_29130 0.17 +0.8 6,329,034 + AO353_29130 0.17 -2.6 6,329,034 + AO353_29130 0.17 +0.8 6,329,035 - AO353_29130 0.17 -0.6 6,329,035 - AO353_29130 0.17 -0.6 6,329,035 - AO353_29130 0.17 -0.5 6,329,035 - AO353_29130 0.17 +0.5 6,329,035 - AO353_29130 0.17 -0.2 6,329,035 - AO353_29130 0.17 -0.1 6,329,035 - AO353_29130 0.17 +0.7 6,329,035 - AO353_29130 0.17 -0.1 6,329,035 - AO353_29130 0.17 +1.1 6,329,035 - AO353_29130 0.17 +0.3 6,329,040 + AO353_29130 0.17 -0.4 6,329,041 - AO353_29130 0.17 +0.1 6,329,041 - AO353_29130 0.17 -0.1 6,329,041 - AO353_29130 0.17 +1.6 6,329,041 - AO353_29130 0.17 -0.0 6,329,175 + AO353_29130 0.32 -2.1 6,329,175 + AO353_29130 0.32 -0.5 6,329,175 + AO353_29130 0.32 +0.2 6,329,175 - AO353_29130 0.32 -0.2 6,329,176 - AO353_29130 0.32 -0.9 6,329,176 - AO353_29130 0.32 -0.3 6,329,176 - AO353_29130 0.32 +0.9 6,329,176 - AO353_29130 0.32 -1.2 6,329,283 + AO353_29130 0.44 +0.0 6,329,284 - +1.5 6,329,284 - AO353_29130 0.44 +0.2 6,329,589 + AO353_29130 0.77 +0.2 6,329,709 + -1.5 6,329,709 + +1.2 6,329,709 + +0.1 6,329,709 + -0.8 6,329,709 + +0.5 6,329,709 + -0.6 6,329,709 + -0.3 6,329,709 + +0.1 6,329,709 + +1.6 6,329,710 - -0.5 6,329,710 - +0.1 6,329,710 - -0.9 6,329,710 - +0.8 6,329,710 - -0.9 6,329,710 - +2.1 6,329,710 - +0.7 6,329,763 + +0.2 6,329,763 + +0.5 6,329,764 - -0.7 6,329,764 - -1.1 6,329,784 + -0.9 6,329,784 + +0.7 6,329,784 + -0.1 6,329,784 + +0.2 6,329,784 + -0.8 6,329,784 + -0.6 6,329,784 + -0.1 6,329,785 - +0.6 6,329,785 - -1.0 6,329,785 - -1.5 6,329,811 + +0.2
Or see this region's nucleotide sequence