Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29125

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29115 and AO353_29120 are separated by 165 nucleotidesAO353_29120 and AO353_29125 overlap by 4 nucleotidesAO353_29125 and AO353_29130 are separated by 22 nucleotides AO353_29115: AO353_29115 - enamine deaminase RidA, at 6,326,456 to 6,326,872 _29115 AO353_29120: AO353_29120 - fimbrial assembly protein FimA, at 6,327,038 to 6,327,715 _29120 AO353_29125: AO353_29125 - acetylornithine deacetylase, at 6,327,712 to 6,328,860 _29125 AO353_29130: AO353_29130 - LysR family transcriptional regulator, at 6,328,883 to 6,329,794 _29130 Position (kb) 6327 6328 6329Strain fitness (log2 ratio) -2 -1 0 1 2at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.751 kb on - strand, within AO353_29115at 6326.881 kb on - strandat 6326.916 kb on + strandat 6326.916 kb on + strandat 6326.917 kb on - strandat 6327.267 kb on - strand, within AO353_29120at 6327.418 kb on - strand, within AO353_29120at 6327.651 kb on - strandat 6327.651 kb on - strandat 6327.651 kb on - strandat 6327.805 kb on + strandat 6327.805 kb on + strandat 6327.806 kb on - strandat 6327.841 kb on + strand, within AO353_29125at 6327.841 kb on + strand, within AO353_29125at 6327.841 kb on + strand, within AO353_29125at 6327.841 kb on + strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.997 kb on + strand, within AO353_29125at 6327.998 kb on - strand, within AO353_29125at 6327.998 kb on - strand, within AO353_29125at 6327.998 kb on - strand, within AO353_29125at 6328.027 kb on + strand, within AO353_29125at 6328.027 kb on + strand, within AO353_29125at 6328.028 kb on - strand, within AO353_29125at 6328.028 kb on - strand, within AO353_29125at 6328.028 kb on - strand, within AO353_29125at 6328.028 kb on - strand, within AO353_29125at 6328.028 kb on - strand, within AO353_29125at 6328.028 kb on - strand, within AO353_29125at 6328.092 kb on + strand, within AO353_29125at 6328.106 kb on - strand, within AO353_29125at 6328.312 kb on + strand, within AO353_29125at 6328.534 kb on + strand, within AO353_29125at 6328.534 kb on + strand, within AO353_29125at 6328.534 kb on + strand, within AO353_29125at 6328.534 kb on + strand, within AO353_29125at 6328.535 kb on - strand, within AO353_29125at 6328.535 kb on - strand, within AO353_29125at 6328.535 kb on - strand, within AO353_29125at 6328.535 kb on - strand, within AO353_29125at 6328.535 kb on - strand, within AO353_29125at 6328.550 kb on + strand, within AO353_29125at 6328.550 kb on + strand, within AO353_29125at 6328.551 kb on - strand, within AO353_29125at 6328.551 kb on - strand, within AO353_29125at 6328.551 kb on - strand, within AO353_29125at 6328.551 kb on - strand, within AO353_29125at 6328.551 kb on - strand, within AO353_29125at 6328.613 kb on - strand, within AO353_29125at 6328.888 kb on + strandat 6328.888 kb on + strandat 6328.888 kb on + strandat 6328.889 kb on - strandat 6328.889 kb on - strandat 6328.889 kb on - strandat 6328.889 kb on - strandat 6328.889 kb on - strandat 6328.889 kb on - strandat 6328.890 kb on + strandat 6328.890 kb on + strandat 6328.891 kb on - strandat 6328.891 kb on - strandat 6329.034 kb on + strand, within AO353_29130at 6329.034 kb on + strand, within AO353_29130at 6329.034 kb on + strand, within AO353_29130at 6329.034 kb on + strand, within AO353_29130at 6329.034 kb on + strand, within AO353_29130at 6329.034 kb on + strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.035 kb on - strand, within AO353_29130at 6329.040 kb on + strand, within AO353_29130at 6329.041 kb on - strand, within AO353_29130at 6329.041 kb on - strand, within AO353_29130at 6329.041 kb on - strand, within AO353_29130at 6329.041 kb on - strand, within AO353_29130at 6329.175 kb on + strand, within AO353_29130at 6329.175 kb on + strand, within AO353_29130at 6329.175 kb on + strand, within AO353_29130at 6329.175 kb on - strand, within AO353_29130at 6329.176 kb on - strand, within AO353_29130at 6329.176 kb on - strand, within AO353_29130at 6329.176 kb on - strand, within AO353_29130at 6329.176 kb on - strand, within AO353_29130at 6329.283 kb on + strand, within AO353_29130at 6329.284 kb on - strandat 6329.284 kb on - strand, within AO353_29130at 6329.589 kb on + strand, within AO353_29130at 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.709 kb on + strandat 6329.710 kb on - strandat 6329.710 kb on - strandat 6329.710 kb on - strandat 6329.710 kb on - strandat 6329.710 kb on - strandat 6329.710 kb on - strandat 6329.710 kb on - strandat 6329.763 kb on + strandat 6329.763 kb on + strandat 6329.764 kb on - strandat 6329.764 kb on - strandat 6329.784 kb on + strandat 6329.784 kb on + strandat 6329.784 kb on + strandat 6329.784 kb on + strandat 6329.784 kb on + strandat 6329.784 kb on + strandat 6329.784 kb on + strandat 6329.785 kb on - strandat 6329.785 kb on - strandat 6329.785 kb on - strandat 6329.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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6,326,717 + AO353_29115 0.63 +0.2
6,326,717 + AO353_29115 0.63 -0.4
6,326,717 + AO353_29115 0.63 +1.6
6,326,717 + AO353_29115 0.63 +0.9
6,326,717 + AO353_29115 0.63 -1.6
6,326,717 + AO353_29115 0.63 +0.4
6,326,717 + AO353_29115 0.63 -0.2
6,326,717 + AO353_29115 0.63 -0.9
6,326,717 + AO353_29115 0.63 +0.2
6,326,717 + AO353_29115 0.63 +0.1
6,326,717 + AO353_29115 0.63 -0.5
6,326,718 - AO353_29115 0.63 -0.6
6,326,718 - AO353_29115 0.63 +0.9
6,326,718 - AO353_29115 0.63 +0.5
6,326,718 - AO353_29115 0.63 -1.5
6,326,751 - AO353_29115 0.71 -0.1
6,326,881 - -0.4
6,326,916 + -0.9
6,326,916 + -0.7
6,326,917 - +1.8
6,327,267 - AO353_29120 0.34 -1.3
6,327,418 - AO353_29120 0.56 +0.6
6,327,651 - -1.4
6,327,651 - +0.5
6,327,651 - -1.3
6,327,805 + -0.9
6,327,805 + -0.9
6,327,806 - -0.1
6,327,841 + AO353_29125 0.11 -1.9
6,327,841 + AO353_29125 0.11 +0.4
6,327,841 + AO353_29125 0.11 +1.5
6,327,841 + AO353_29125 0.11 -0.8
6,327,842 - AO353_29125 0.11 +0.5
6,327,842 - AO353_29125 0.11 -1.1
6,327,842 - AO353_29125 0.11 -0.1
6,327,842 - AO353_29125 0.11 +0.9
6,327,842 - AO353_29125 0.11 -1.3
6,327,997 + AO353_29125 0.25 +0.2
6,327,998 - AO353_29125 0.25 +0.0
6,327,998 - AO353_29125 0.25 -1.0
6,327,998 - AO353_29125 0.25 +0.5
6,328,027 + AO353_29125 0.27 +0.7
6,328,027 + AO353_29125 0.27 -0.4
6,328,028 - AO353_29125 0.28 -1.3
6,328,028 - AO353_29125 0.28 +1.7
6,328,028 - AO353_29125 0.28 -0.4
6,328,028 - AO353_29125 0.28 -1.2
6,328,028 - AO353_29125 0.28 -0.3
6,328,028 - AO353_29125 0.28 -0.8
6,328,092 + AO353_29125 0.33 -2.7
6,328,106 - AO353_29125 0.34 -0.9
6,328,312 + AO353_29125 0.52 -0.4
6,328,534 + AO353_29125 0.72 -0.3
6,328,534 + AO353_29125 0.72 -0.8
6,328,534 + AO353_29125 0.72 +0.1
6,328,534 + AO353_29125 0.72 -0.9
6,328,535 - AO353_29125 0.72 +0.8
6,328,535 - AO353_29125 0.72 -1.9
6,328,535 - AO353_29125 0.72 +0.5
6,328,535 - AO353_29125 0.72 +0.9
6,328,535 - AO353_29125 0.72 -0.7
6,328,550 + AO353_29125 0.73 -0.5
6,328,550 + AO353_29125 0.73 +0.1
6,328,551 - AO353_29125 0.73 -0.7
6,328,551 - AO353_29125 0.73 +0.7
6,328,551 - AO353_29125 0.73 -1.2
6,328,551 - AO353_29125 0.73 -0.2
6,328,551 - AO353_29125 0.73 +0.2
6,328,613 - AO353_29125 0.78 -2.1
6,328,888 + +0.5
6,328,888 + +0.1
6,328,888 + +2.1
6,328,889 - -1.0
6,328,889 - +1.3
6,328,889 - -0.9
6,328,889 - +0.6
6,328,889 - +1.1
6,328,889 - +0.1
6,328,890 + -0.5
6,328,890 + +0.6
6,328,891 - +0.9
6,328,891 - -0.2
6,329,034 + AO353_29130 0.17 -0.6
6,329,034 + AO353_29130 0.17 -0.4
6,329,034 + AO353_29130 0.17 -0.1
6,329,034 + AO353_29130 0.17 +0.8
6,329,034 + AO353_29130 0.17 -2.6
6,329,034 + AO353_29130 0.17 +0.8
6,329,035 - AO353_29130 0.17 -0.6
6,329,035 - AO353_29130 0.17 -0.6
6,329,035 - AO353_29130 0.17 -0.5
6,329,035 - AO353_29130 0.17 +0.5
6,329,035 - AO353_29130 0.17 -0.2
6,329,035 - AO353_29130 0.17 -0.1
6,329,035 - AO353_29130 0.17 +0.7
6,329,035 - AO353_29130 0.17 -0.1
6,329,035 - AO353_29130 0.17 +1.1
6,329,035 - AO353_29130 0.17 +0.3
6,329,040 + AO353_29130 0.17 -0.4
6,329,041 - AO353_29130 0.17 +0.1
6,329,041 - AO353_29130 0.17 -0.1
6,329,041 - AO353_29130 0.17 +1.6
6,329,041 - AO353_29130 0.17 -0.0
6,329,175 + AO353_29130 0.32 -2.1
6,329,175 + AO353_29130 0.32 -0.5
6,329,175 + AO353_29130 0.32 +0.2
6,329,175 - AO353_29130 0.32 -0.2
6,329,176 - AO353_29130 0.32 -0.9
6,329,176 - AO353_29130 0.32 -0.3
6,329,176 - AO353_29130 0.32 +0.9
6,329,176 - AO353_29130 0.32 -1.2
6,329,283 + AO353_29130 0.44 +0.0
6,329,284 - +1.5
6,329,284 - AO353_29130 0.44 +0.2
6,329,589 + AO353_29130 0.77 +0.2
6,329,709 + -1.5
6,329,709 + +1.2
6,329,709 + +0.1
6,329,709 + -0.8
6,329,709 + +0.5
6,329,709 + -0.6
6,329,709 + -0.3
6,329,709 + +0.1
6,329,709 + +1.6
6,329,710 - -0.5
6,329,710 - +0.1
6,329,710 - -0.9
6,329,710 - +0.8
6,329,710 - -0.9
6,329,710 - +2.1
6,329,710 - +0.7
6,329,763 + +0.2
6,329,763 + +0.5
6,329,764 - -0.7
6,329,764 - -1.1
6,329,784 + -0.9
6,329,784 + +0.7
6,329,784 + -0.1
6,329,784 + +0.2
6,329,784 + -0.8
6,329,784 + -0.6
6,329,784 + -0.1
6,329,785 - +0.6
6,329,785 - -1.0
6,329,785 - -1.5
6,329,811 + +0.2

Or see this region's nucleotide sequence