Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27220

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27210 and AO353_27215 are separated by 413 nucleotidesAO353_27215 and AO353_27220 are separated by 261 nucleotidesAO353_27220 and AO353_27225 are separated by 221 nucleotidesAO353_27225 and AO353_27230 are separated by 172 nucleotides AO353_27210: AO353_27210 - hypothetical protein, at 5,951,601 to 5,952,761 _27210 AO353_27215: AO353_27215 - hypothetical protein, at 5,953,175 to 5,953,390 _27215 AO353_27220: AO353_27220 - hypothetical protein, at 5,953,652 to 5,954,614 _27220 AO353_27225: AO353_27225 - hypothetical protein, at 5,954,836 to 5,955,075 _27225 AO353_27230: AO353_27230 - pyocin, at 5,955,248 to 5,956,453 _27230 Position (kb) 5953 5954 5955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5952.674 kb on + strandat 5952.725 kb on + strandat 5952.726 kb on - strandat 5952.755 kb on + strandat 5952.755 kb on + strandat 5952.755 kb on + strandat 5952.755 kb on + strandat 5952.761 kb on + strandat 5952.761 kb on + strandat 5952.761 kb on + strandat 5952.761 kb on + strandat 5952.762 kb on - strandat 5952.762 kb on - strandat 5952.811 kb on + strandat 5952.811 kb on + strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.812 kb on - strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.814 kb on + strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.815 kb on - strandat 5952.818 kb on + strandat 5952.818 kb on + strandat 5952.818 kb on + strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.819 kb on - strandat 5952.825 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.851 kb on + strandat 5952.960 kb on - strandat 5953.030 kb on + strandat 5953.089 kb on - strandat 5953.098 kb on + strandat 5953.113 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.140 kb on + strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.141 kb on - strandat 5953.187 kb on + strandat 5953.203 kb on + strand, within AO353_27215at 5953.204 kb on - strand, within AO353_27215at 5953.204 kb on - strand, within AO353_27215at 5953.217 kb on + strand, within AO353_27215at 5953.217 kb on + strand, within AO353_27215at 5953.217 kb on + strand, within AO353_27215at 5953.218 kb on - strand, within AO353_27215at 5953.491 kb on + strandat 5953.492 kb on - strandat 5953.506 kb on + strandat 5953.561 kb on + strandat 5953.608 kb on - strandat 5953.608 kb on - strandat 5953.630 kb on - strandat 5953.757 kb on - strand, within AO353_27220at 5953.763 kb on - strand, within AO353_27220at 5953.815 kb on - strand, within AO353_27220at 5953.863 kb on + strand, within AO353_27220at 5953.864 kb on - strand, within AO353_27220at 5953.977 kb on + strand, within AO353_27220at 5954.014 kb on + strand, within AO353_27220at 5954.164 kb on + strand, within AO353_27220at 5954.320 kb on - strand, within AO353_27220at 5954.320 kb on - strand, within AO353_27220at 5954.617 kb on - strandat 5954.825 kb on + strandat 5954.825 kb on + strandat 5954.825 kb on + strandat 5954.825 kb on + strandat 5954.825 kb on + strandat 5954.826 kb on - strandat 5954.826 kb on - strandat 5954.859 kb on + strandat 5955.179 kb on + strandat 5955.179 kb on + strandat 5955.179 kb on + strandat 5955.179 kb on + strandat 5955.180 kb on - strandat 5955.180 kb on - strandat 5955.180 kb on - strandat 5955.180 kb on - strandat 5955.180 kb on - strandat 5955.180 kb on - strandat 5955.180 kb on - strandat 5955.212 kb on - strandat 5955.257 kb on + strandat 5955.258 kb on - strandat 5955.289 kb on + strandat 5955.289 kb on + strandat 5955.289 kb on + strandat 5955.290 kb on - strandat 5955.292 kb on + strandat 5955.292 kb on + strandat 5955.293 kb on - strandat 5955.306 kb on - strandat 5955.307 kb on - strandat 5955.307 kb on - strandat 5955.319 kb on + strandat 5955.344 kb on + strandat 5955.344 kb on + strandat 5955.344 kb on + strandat 5955.344 kb on + strandat 5955.344 kb on + strandat 5955.344 kb on + strandat 5955.345 kb on - strandat 5955.562 kb on + strand, within AO353_27230

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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5,952,674 + +0.9
5,952,725 + -0.6
5,952,726 - -0.9
5,952,755 + -0.2
5,952,755 + -1.2
5,952,755 + -3.2
5,952,755 + -2.5
5,952,761 + -0.6
5,952,761 + -0.3
5,952,761 + +0.9
5,952,761 + -0.6
5,952,762 - -0.9
5,952,762 - +0.7
5,952,811 + -1.1
5,952,811 + +0.9
5,952,812 - +2.1
5,952,812 - +0.3
5,952,812 - -1.7
5,952,812 - -1.4
5,952,812 - -1.1
5,952,814 + +0.6
5,952,814 + +0.3
5,952,814 + -1.1
5,952,814 + -1.9
5,952,814 + -0.6
5,952,815 - +1.7
5,952,815 - -1.4
5,952,815 - -0.5
5,952,815 - -0.3
5,952,815 - -0.7
5,952,815 - -0.3
5,952,818 + -0.7
5,952,818 + +0.7
5,952,818 + -1.1
5,952,819 - +1.0
5,952,819 - +0.3
5,952,819 - -1.2
5,952,819 - +0.1
5,952,819 - -0.4
5,952,825 + +1.1
5,952,851 + -0.4
5,952,851 + -0.0
5,952,851 + -1.4
5,952,851 + -0.4
5,952,851 + +0.4
5,952,851 + -1.1
5,952,960 - -1.2
5,953,030 + -0.2
5,953,089 - -2.1
5,953,098 + +1.4
5,953,113 + -0.5
5,953,140 + -0.4
5,953,140 + -0.1
5,953,140 + -1.0
5,953,140 + +0.8
5,953,140 + +1.9
5,953,140 + -1.4
5,953,140 + +0.1
5,953,140 + +0.1
5,953,140 + -0.2
5,953,140 + +0.2
5,953,140 + +0.9
5,953,140 + -0.1
5,953,141 - -1.4
5,953,141 - +1.0
5,953,141 - -0.1
5,953,141 - -0.6
5,953,141 - +0.2
5,953,141 - +0.8
5,953,141 - -0.9
5,953,141 - -0.9
5,953,141 - -0.6
5,953,141 - -0.6
5,953,141 - +0.1
5,953,141 - -0.1
5,953,141 - +0.3
5,953,141 - -1.1
5,953,187 + +0.5
5,953,203 + AO353_27215 0.13 -0.3
5,953,204 - AO353_27215 0.13 +0.8
5,953,204 - AO353_27215 0.13 +0.8
5,953,217 + AO353_27215 0.19 -0.6
5,953,217 + AO353_27215 0.19 -0.4
5,953,217 + AO353_27215 0.19 -1.9
5,953,218 - AO353_27215 0.20 +0.9
5,953,491 + +0.8
5,953,492 - +0.9
5,953,506 + +0.7
5,953,561 + +0.2
5,953,608 - -1.3
5,953,608 - -0.2
5,953,630 - -0.7
5,953,757 - AO353_27220 0.11 -0.6
5,953,763 - AO353_27220 0.12 -1.5
5,953,815 - AO353_27220 0.17 -1.1
5,953,863 + AO353_27220 0.22 -0.4
5,953,864 - AO353_27220 0.22 +0.4
5,953,977 + AO353_27220 0.34 -0.0
5,954,014 + AO353_27220 0.38 -0.7
5,954,164 + AO353_27220 0.53 -0.5
5,954,320 - AO353_27220 0.69 -1.1
5,954,320 - AO353_27220 0.69 -0.8
5,954,617 - +0.2
5,954,825 + -0.7
5,954,825 + -0.3
5,954,825 + +0.4
5,954,825 + +0.3
5,954,825 + +0.4
5,954,826 - -0.4
5,954,826 - +0.0
5,954,859 + -1.1
5,955,179 + -0.2
5,955,179 + -0.6
5,955,179 + -0.4
5,955,179 + -0.1
5,955,180 - -2.2
5,955,180 - -0.8
5,955,180 - -0.2
5,955,180 - -0.2
5,955,180 - -0.4
5,955,180 - -1.2
5,955,180 - -2.0
5,955,212 - -0.3
5,955,257 + +0.3
5,955,258 - -0.7
5,955,289 + -0.8
5,955,289 + -1.1
5,955,289 + -0.2
5,955,290 - -1.9
5,955,292 + -0.9
5,955,292 + +0.4
5,955,293 - +0.1
5,955,306 - +0.4
5,955,307 - +1.0
5,955,307 - -1.1
5,955,319 + -1.4
5,955,344 + -1.2
5,955,344 + -1.1
5,955,344 + -1.3
5,955,344 + +1.3
5,955,344 + +0.6
5,955,344 + -0.9
5,955,345 - -0.2
5,955,562 + AO353_27230 0.26 -1.2

Or see this region's nucleotide sequence