Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23770

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23765 and AO353_23770 overlap by 4 nucleotidesAO353_23770 and AO353_23775 are separated by 13 nucleotides AO353_23765: AO353_23765 - 4-alpha-glucanotransferase, at 5,211,538 to 5,213,619 _23765 AO353_23770: AO353_23770 - malto-oligosyltrehalose trehalohydrolase, at 5,213,616 to 5,215,421 _23770 AO353_23775: AO353_23775 - glycogen synthase, at 5,215,435 to 5,217,003 _23775 Position (kb) 5213 5214 5215 5216Strain fitness (log2 ratio) -2 -1 0 1 2at 5212.802 kb on + strand, within AO353_23765at 5212.802 kb on + strand, within AO353_23765at 5212.803 kb on - strand, within AO353_23765at 5212.956 kb on - strand, within AO353_23765at 5212.956 kb on - strand, within AO353_23765at 5212.956 kb on - strand, within AO353_23765at 5213.141 kb on + strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.142 kb on - strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.143 kb on + strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.144 kb on - strand, within AO353_23765at 5213.287 kb on + strand, within AO353_23765at 5213.287 kb on + strand, within AO353_23765at 5213.287 kb on + strand, within AO353_23765at 5213.288 kb on - strand, within AO353_23765at 5213.288 kb on - strand, within AO353_23765at 5213.305 kb on + strand, within AO353_23765at 5213.305 kb on + strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.306 kb on - strand, within AO353_23765at 5213.478 kb on + strandat 5213.822 kb on + strand, within AO353_23770at 5213.823 kb on - strand, within AO353_23770at 5213.823 kb on - strand, within AO353_23770at 5213.839 kb on - strand, within AO353_23770at 5214.154 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.200 kb on + strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.201 kb on - strand, within AO353_23770at 5214.363 kb on - strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.436 kb on + strand, within AO353_23770at 5214.437 kb on - strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.439 kb on + strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.440 kb on - strand, within AO353_23770at 5214.671 kb on - strand, within AO353_23770at 5214.787 kb on + strand, within AO353_23770at 5214.799 kb on + strand, within AO353_23770at 5214.826 kb on + strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.827 kb on - strand, within AO353_23770at 5214.904 kb on + strand, within AO353_23770at 5214.904 kb on + strand, within AO353_23770at 5214.904 kb on + strand, within AO353_23770at 5214.905 kb on - strand, within AO353_23770at 5214.950 kb on + strand, within AO353_23770at 5215.072 kb on + strandat 5215.073 kb on - strand, within AO353_23770at 5215.222 kb on + strand, within AO353_23770at 5215.222 kb on + strand, within AO353_23770at 5215.223 kb on - strand, within AO353_23770at 5215.481 kb on + strandat 5215.481 kb on + strandat 5215.481 kb on + strandat 5215.494 kb on - strandat 5215.607 kb on + strand, within AO353_23775at 5215.607 kb on + strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.608 kb on - strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.718 kb on + strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.719 kb on - strand, within AO353_23775at 5215.819 kb on + strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.820 kb on - strand, within AO353_23775at 5215.965 kb on - strand, within AO353_23775at 5216.205 kb on + strand, within AO353_23775at 5216.205 kb on + strand, within AO353_23775at 5216.206 kb on - strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.222 kb on + strand, within AO353_23775at 5216.223 kb on - strand, within AO353_23775at 5216.244 kb on + strand, within AO353_23775at 5216.244 kb on + strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.245 kb on - strand, within AO353_23775at 5216.255 kb on + strand, within AO353_23775at 5216.256 kb on - strand, within AO353_23775at 5216.292 kb on - strand, within AO353_23775at 5216.332 kb on - strand, within AO353_23775at 5216.372 kb on + strand, within AO353_23775at 5216.373 kb on - strand, within AO353_23775at 5216.373 kb on - strandat 5216.382 kb on + strand, within AO353_23775at 5216.382 kb on + strand, within AO353_23775at 5216.383 kb on - strand, within AO353_23775

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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5,212,802 + AO353_23765 0.61 -0.4
5,212,802 + AO353_23765 0.61 +1.3
5,212,803 - AO353_23765 0.61 +1.1
5,212,956 - AO353_23765 0.68 -0.4
5,212,956 - AO353_23765 0.68 +0.3
5,212,956 - AO353_23765 0.68 +1.2
5,213,141 + AO353_23765 0.77 +0.5
5,213,142 - AO353_23765 0.77 +0.0
5,213,142 - AO353_23765 0.77 +0.3
5,213,142 - AO353_23765 0.77 -1.5
5,213,142 - AO353_23765 0.77 -1.1
5,213,143 + AO353_23765 0.77 +0.9
5,213,143 + AO353_23765 0.77 +0.7
5,213,143 + AO353_23765 0.77 -0.1
5,213,143 + AO353_23765 0.77 -2.5
5,213,144 - AO353_23765 0.77 -2.2
5,213,144 - AO353_23765 0.77 +1.9
5,213,144 - AO353_23765 0.77 -0.1
5,213,144 - AO353_23765 0.77 -0.2
5,213,287 + AO353_23765 0.84 -0.1
5,213,287 + AO353_23765 0.84 -1.2
5,213,287 + AO353_23765 0.84 -0.6
5,213,288 - AO353_23765 0.84 -0.7
5,213,288 - AO353_23765 0.84 -1.8
5,213,305 + AO353_23765 0.85 -0.3
5,213,305 + AO353_23765 0.85 +0.0
5,213,306 - AO353_23765 0.85 -1.7
5,213,306 - AO353_23765 0.85 -0.1
5,213,306 - AO353_23765 0.85 +0.0
5,213,306 - AO353_23765 0.85 +0.5
5,213,306 - AO353_23765 0.85 -1.8
5,213,306 - AO353_23765 0.85 +0.2
5,213,478 + -0.6
5,213,822 + AO353_23770 0.11 -1.0
5,213,823 - AO353_23770 0.11 +0.2
5,213,823 - AO353_23770 0.11 -0.3
5,213,839 - AO353_23770 0.12 -0.7
5,214,154 + AO353_23770 0.30 +0.1
5,214,200 + AO353_23770 0.32 +1.2
5,214,200 + AO353_23770 0.32 -0.8
5,214,200 + AO353_23770 0.32 -0.5
5,214,200 + AO353_23770 0.32 -2.1
5,214,200 + AO353_23770 0.32 +1.3
5,214,200 + AO353_23770 0.32 +1.0
5,214,200 + AO353_23770 0.32 -0.5
5,214,200 + AO353_23770 0.32 -0.3
5,214,200 + AO353_23770 0.32 -0.8
5,214,200 + AO353_23770 0.32 -0.6
5,214,200 + AO353_23770 0.32 -1.0
5,214,200 + AO353_23770 0.32 +0.6
5,214,201 - AO353_23770 0.32 +0.4
5,214,201 - AO353_23770 0.32 -0.7
5,214,201 - AO353_23770 0.32 +0.6
5,214,201 - AO353_23770 0.32 -0.2
5,214,201 - AO353_23770 0.32 +0.3
5,214,201 - AO353_23770 0.32 +1.5
5,214,201 - AO353_23770 0.32 +1.4
5,214,201 - AO353_23770 0.32 -2.1
5,214,201 - AO353_23770 0.32 -0.5
5,214,201 - AO353_23770 0.32 +0.9
5,214,363 - AO353_23770 0.41 -0.8
5,214,436 + AO353_23770 0.45 -0.1
5,214,436 + AO353_23770 0.45 -0.3
5,214,436 + AO353_23770 0.45 +1.0
5,214,437 - AO353_23770 0.45 +0.5
5,214,439 + AO353_23770 0.46 -1.6
5,214,439 + AO353_23770 0.46 -1.3
5,214,439 + AO353_23770 0.46 -0.6
5,214,439 + AO353_23770 0.46 +0.3
5,214,439 + AO353_23770 0.46 -0.2
5,214,440 - AO353_23770 0.46 -2.3
5,214,440 - AO353_23770 0.46 +0.7
5,214,440 - AO353_23770 0.46 +0.4
5,214,671 - AO353_23770 0.58 +1.3
5,214,787 + AO353_23770 0.65 -0.3
5,214,799 + AO353_23770 0.66 -0.3
5,214,826 + AO353_23770 0.67 +0.1
5,214,827 - AO353_23770 0.67 -2.3
5,214,827 - AO353_23770 0.67 +0.3
5,214,827 - AO353_23770 0.67 +1.1
5,214,827 - AO353_23770 0.67 -0.5
5,214,904 + AO353_23770 0.71 -1.1
5,214,904 + AO353_23770 0.71 +0.1
5,214,904 + AO353_23770 0.71 -0.2
5,214,905 - AO353_23770 0.71 +0.8
5,214,950 + AO353_23770 0.74 -2.1
5,215,072 + +1.1
5,215,073 - AO353_23770 0.81 +0.1
5,215,222 + AO353_23770 0.89 -1.6
5,215,222 + AO353_23770 0.89 -1.1
5,215,223 - AO353_23770 0.89 -0.8
5,215,481 + +0.4
5,215,481 + -0.8
5,215,481 + -0.1
5,215,494 - -1.0
5,215,607 + AO353_23775 0.11 +0.9
5,215,607 + AO353_23775 0.11 +0.3
5,215,608 - AO353_23775 0.11 -0.0
5,215,608 - AO353_23775 0.11 -0.5
5,215,608 - AO353_23775 0.11 -0.4
5,215,608 - AO353_23775 0.11 -0.0
5,215,608 - AO353_23775 0.11 +0.4
5,215,608 - AO353_23775 0.11 -0.0
5,215,608 - AO353_23775 0.11 +0.9
5,215,718 + AO353_23775 0.18 -0.6
5,215,718 + AO353_23775 0.18 +1.6
5,215,718 + AO353_23775 0.18 -0.4
5,215,718 + AO353_23775 0.18 +0.2
5,215,718 + AO353_23775 0.18 +0.5
5,215,718 + AO353_23775 0.18 -0.4
5,215,718 + AO353_23775 0.18 -0.6
5,215,719 - AO353_23775 0.18 +0.5
5,215,719 - AO353_23775 0.18 -0.5
5,215,719 - AO353_23775 0.18 +0.0
5,215,719 - AO353_23775 0.18 +0.9
5,215,719 - AO353_23775 0.18 +0.1
5,215,719 - AO353_23775 0.18 -0.7
5,215,719 - AO353_23775 0.18 +0.4
5,215,719 - AO353_23775 0.18 -0.4
5,215,819 + AO353_23775 0.24 -0.5
5,215,820 - AO353_23775 0.25 -0.3
5,215,820 - AO353_23775 0.25 -0.2
5,215,820 - AO353_23775 0.25 -0.5
5,215,820 - AO353_23775 0.25 -0.3
5,215,965 - AO353_23775 0.34 -1.0
5,216,205 + AO353_23775 0.49 +0.2
5,216,205 + AO353_23775 0.49 -2.0
5,216,206 - AO353_23775 0.49 -2.2
5,216,222 + AO353_23775 0.50 -1.3
5,216,222 + AO353_23775 0.50 +0.1
5,216,222 + AO353_23775 0.50 -0.5
5,216,222 + AO353_23775 0.50 -1.4
5,216,223 - AO353_23775 0.50 +0.9
5,216,244 + AO353_23775 0.52 -0.7
5,216,244 + AO353_23775 0.52 +0.4
5,216,245 - AO353_23775 0.52 +1.9
5,216,245 - AO353_23775 0.52 -0.7
5,216,245 - AO353_23775 0.52 -1.1
5,216,245 - AO353_23775 0.52 -1.6
5,216,255 + AO353_23775 0.52 +1.4
5,216,256 - AO353_23775 0.52 -1.1
5,216,292 - AO353_23775 0.55 -1.4
5,216,332 - AO353_23775 0.57 -1.4
5,216,372 + AO353_23775 0.60 -1.4
5,216,373 - AO353_23775 0.60 +0.3
5,216,373 - -1.1
5,216,382 + AO353_23775 0.60 -0.4
5,216,382 + AO353_23775 0.60 -0.7
5,216,383 - AO353_23775 0.60 -0.2

Or see this region's nucleotide sequence