Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22450

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22445 and AO353_22450 are separated by 814 nucleotidesAO353_22450 and AO353_22455 are separated by 389 nucleotides AO353_22445: AO353_22445 - hypothetical protein, at 4,919,400 to 4,923,551 _22445 AO353_22450: AO353_22450 - dipeptidase, at 4,924,366 to 4,926,105 _22450 AO353_22455: AO353_22455 - endonuclease, at 4,926,495 to 4,927,370 _22455 Position (kb) 4924 4925 4926 4927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4923.619 kb on + strandat 4923.619 kb on + strandat 4923.619 kb on + strandat 4923.619 kb on + strandat 4923.620 kb on - strandat 4923.685 kb on + strandat 4923.685 kb on + strandat 4923.685 kb on + strandat 4923.848 kb on - strandat 4923.880 kb on + strandat 4923.880 kb on + strandat 4923.880 kb on + strandat 4923.880 kb on + strandat 4923.881 kb on - strandat 4923.881 kb on - strandat 4923.881 kb on - strandat 4923.979 kb on + strandat 4923.979 kb on + strandat 4923.979 kb on + strandat 4923.979 kb on + strandat 4923.979 kb on + strandat 4923.979 kb on + strandat 4923.979 kb on + strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.980 kb on - strandat 4923.992 kb on - strandat 4923.992 kb on - strandat 4923.992 kb on - strandat 4923.992 kb on - strandat 4924.040 kb on + strandat 4924.040 kb on + strandat 4924.041 kb on - strandat 4924.054 kb on + strandat 4924.080 kb on + strandat 4924.080 kb on + strandat 4924.080 kb on + strandat 4924.080 kb on + strandat 4924.080 kb on + strandat 4924.080 kb on + strandat 4924.080 kb on + strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.081 kb on - strandat 4924.102 kb on + strandat 4924.103 kb on - strandat 4924.103 kb on - strandat 4924.103 kb on - strandat 4924.155 kb on + strandat 4924.155 kb on + strandat 4924.214 kb on + strandat 4924.214 kb on + strandat 4924.214 kb on + strandat 4924.215 kb on - strandat 4924.220 kb on + strandat 4924.220 kb on + strandat 4924.220 kb on + strandat 4924.221 kb on - strandat 4924.221 kb on - strandat 4924.472 kb on + strandat 4924.472 kb on + strandat 4924.472 kb on + strandat 4924.472 kb on + strandat 4924.473 kb on - strandat 4924.473 kb on - strandat 4924.649 kb on + strand, within AO353_22450at 4924.734 kb on + strand, within AO353_22450at 4924.735 kb on - strand, within AO353_22450at 4924.793 kb on + strand, within AO353_22450at 4924.793 kb on + strand, within AO353_22450at 4924.793 kb on + strand, within AO353_22450at 4924.793 kb on + strand, within AO353_22450at 4924.794 kb on - strand, within AO353_22450at 4924.794 kb on - strand, within AO353_22450at 4924.863 kb on - strand, within AO353_22450at 4924.933 kb on - strandat 4924.933 kb on - strand, within AO353_22450at 4924.933 kb on - strand, within AO353_22450at 4925.091 kb on - strand, within AO353_22450at 4925.315 kb on + strand, within AO353_22450at 4925.343 kb on - strand, within AO353_22450at 4925.343 kb on - strand, within AO353_22450at 4925.343 kb on - strand, within AO353_22450at 4925.345 kb on + strand, within AO353_22450at 4925.346 kb on - strand, within AO353_22450at 4925.379 kb on + strand, within AO353_22450at 4925.380 kb on - strand, within AO353_22450at 4925.383 kb on + strand, within AO353_22450at 4925.383 kb on + strand, within AO353_22450at 4925.383 kb on + strand, within AO353_22450at 4925.383 kb on + strand, within AO353_22450at 4925.384 kb on - strand, within AO353_22450at 4925.444 kb on + strand, within AO353_22450at 4925.444 kb on + strand, within AO353_22450at 4925.445 kb on - strand, within AO353_22450at 4925.445 kb on - strand, within AO353_22450at 4925.492 kb on + strand, within AO353_22450at 4925.492 kb on + strand, within AO353_22450at 4925.492 kb on + strand, within AO353_22450at 4925.492 kb on + strand, within AO353_22450at 4925.492 kb on + strand, within AO353_22450at 4925.492 kb on + strand, within AO353_22450at 4925.493 kb on - strand, within AO353_22450at 4925.493 kb on - strand, within AO353_22450at 4925.493 kb on - strand, within AO353_22450at 4925.493 kb on - strand, within AO353_22450at 4925.493 kb on - strand, within AO353_22450at 4925.493 kb on - strand, within AO353_22450at 4925.578 kb on + strand, within AO353_22450at 4925.578 kb on + strand, within AO353_22450at 4925.578 kb on + strand, within AO353_22450at 4925.579 kb on - strand, within AO353_22450at 4925.579 kb on - strand, within AO353_22450at 4925.579 kb on - strand, within AO353_22450at 4925.579 kb on - strand, within AO353_22450at 4925.640 kb on - strand, within AO353_22450at 4925.807 kb on + strand, within AO353_22450at 4925.807 kb on + strand, within AO353_22450at 4925.808 kb on - strand, within AO353_22450at 4925.808 kb on - strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.822 kb on + strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.823 kb on - strand, within AO353_22450at 4925.998 kb on - strandat 4926.176 kb on + strandat 4926.176 kb on + strandat 4926.176 kb on + strandat 4926.177 kb on - strandat 4926.177 kb on - strandat 4926.195 kb on + strandat 4926.196 kb on - strandat 4926.208 kb on + strandat 4926.208 kb on + strandat 4926.208 kb on + strandat 4926.209 kb on - strandat 4926.209 kb on - strandat 4926.283 kb on + strandat 4926.283 kb on + strandat 4926.283 kb on + strandat 4926.283 kb on + strandat 4926.358 kb on + strandat 4926.370 kb on + strandat 4926.389 kb on + strandat 4926.389 kb on + strandat 4926.389 kb on + strandat 4926.390 kb on - strandat 4926.390 kb on - strandat 4926.390 kb on - strandat 4926.471 kb on + strandat 4926.471 kb on + strandat 4926.503 kb on - strandat 4926.503 kb on - strandat 4926.503 kb on - strandat 4926.511 kb on + strandat 4926.512 kb on - strandat 4926.657 kb on + strand, within AO353_22455at 4926.657 kb on + strand, within AO353_22455at 4926.657 kb on + strand, within AO353_22455at 4926.657 kb on + strand, within AO353_22455at 4926.658 kb on - strand, within AO353_22455at 4926.792 kb on + strand, within AO353_22455at 4926.889 kb on - strand, within AO353_22455at 4926.889 kb on - strand, within AO353_22455at 4926.889 kb on - strand, within AO353_22455at 4926.889 kb on - strand, within AO353_22455at 4926.903 kb on - strand, within AO353_22455at 4926.903 kb on - strand, within AO353_22455at 4926.903 kb on - strand, within AO353_22455

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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4,923,619 + -1.0
4,923,619 + -0.8
4,923,619 + -1.5
4,923,619 + +1.0
4,923,620 - +0.6
4,923,685 + -0.3
4,923,685 + +0.7
4,923,685 + +0.4
4,923,848 - +0.2
4,923,880 + -0.2
4,923,880 + -0.6
4,923,880 + +0.1
4,923,880 + -1.7
4,923,881 - -0.2
4,923,881 - -0.4
4,923,881 - +0.8
4,923,979 + -0.1
4,923,979 + -0.3
4,923,979 + +0.8
4,923,979 + -1.8
4,923,979 + -1.0
4,923,979 + +2.5
4,923,979 + +0.7
4,923,980 - +0.5
4,923,980 - -0.3
4,923,980 - +1.0
4,923,980 - -0.8
4,923,980 - -0.6
4,923,980 - +0.1
4,923,980 - -0.6
4,923,980 - -0.8
4,923,992 - -0.3
4,923,992 - -0.6
4,923,992 - +1.5
4,923,992 - -0.3
4,924,040 + -0.3
4,924,040 + -1.0
4,924,041 - -0.8
4,924,054 + +2.0
4,924,080 + +2.0
4,924,080 + -0.9
4,924,080 + +0.3
4,924,080 + -1.1
4,924,080 + +0.2
4,924,080 + +1.8
4,924,080 + -1.1
4,924,081 - -0.4
4,924,081 - +0.2
4,924,081 - -1.2
4,924,081 - -0.2
4,924,081 - -0.0
4,924,081 - -0.3
4,924,081 - +0.3
4,924,081 - +1.8
4,924,081 - -0.5
4,924,081 - -0.5
4,924,102 + -0.0
4,924,103 - -1.0
4,924,103 - -1.8
4,924,103 - -0.9
4,924,155 + -0.3
4,924,155 + -0.3
4,924,214 + +1.7
4,924,214 + -0.3
4,924,214 + -0.0
4,924,215 - -0.5
4,924,220 + +0.3
4,924,220 + -0.5
4,924,220 + +0.1
4,924,221 - +0.2
4,924,221 - -0.1
4,924,472 + -1.2
4,924,472 + -1.7
4,924,472 + -1.7
4,924,472 + -2.3
4,924,473 - -1.1
4,924,473 - -0.2
4,924,649 + AO353_22450 0.16 +1.4
4,924,734 + AO353_22450 0.21 -2.0
4,924,735 - AO353_22450 0.21 -1.0
4,924,793 + AO353_22450 0.25 -1.3
4,924,793 + AO353_22450 0.25 +1.0
4,924,793 + AO353_22450 0.25 -0.3
4,924,793 + AO353_22450 0.25 -0.5
4,924,794 - AO353_22450 0.25 -1.6
4,924,794 - AO353_22450 0.25 -0.7
4,924,863 - AO353_22450 0.29 -0.6
4,924,933 - -0.2
4,924,933 - AO353_22450 0.33 +0.7
4,924,933 - AO353_22450 0.33 -0.5
4,925,091 - AO353_22450 0.42 +0.6
4,925,315 + AO353_22450 0.55 -0.3
4,925,343 - AO353_22450 0.56 -0.6
4,925,343 - AO353_22450 0.56 -0.8
4,925,343 - AO353_22450 0.56 -1.4
4,925,345 + AO353_22450 0.56 +0.0
4,925,346 - AO353_22450 0.56 -0.7
4,925,379 + AO353_22450 0.58 -0.8
4,925,380 - AO353_22450 0.58 -1.6
4,925,383 + AO353_22450 0.58 -1.5
4,925,383 + AO353_22450 0.58 +1.8
4,925,383 + AO353_22450 0.58 +0.6
4,925,383 + AO353_22450 0.58 -1.0
4,925,384 - AO353_22450 0.59 -0.6
4,925,444 + AO353_22450 0.62 +0.0
4,925,444 + AO353_22450 0.62 -0.1
4,925,445 - AO353_22450 0.62 -1.6
4,925,445 - AO353_22450 0.62 -1.0
4,925,492 + AO353_22450 0.65 -0.5
4,925,492 + AO353_22450 0.65 -1.0
4,925,492 + AO353_22450 0.65 -0.9
4,925,492 + AO353_22450 0.65 -1.0
4,925,492 + AO353_22450 0.65 -2.0
4,925,492 + AO353_22450 0.65 -0.2
4,925,493 - AO353_22450 0.65 +0.8
4,925,493 - AO353_22450 0.65 +0.3
4,925,493 - AO353_22450 0.65 -1.4
4,925,493 - AO353_22450 0.65 -3.1
4,925,493 - AO353_22450 0.65 +0.4
4,925,493 - AO353_22450 0.65 +0.4
4,925,578 + AO353_22450 0.70 -0.1
4,925,578 + AO353_22450 0.70 +1.3
4,925,578 + AO353_22450 0.70 -0.9
4,925,579 - AO353_22450 0.70 -0.1
4,925,579 - AO353_22450 0.70 -0.6
4,925,579 - AO353_22450 0.70 -0.5
4,925,579 - AO353_22450 0.70 +0.1
4,925,640 - AO353_22450 0.73 +0.2
4,925,807 + AO353_22450 0.83 -0.6
4,925,807 + AO353_22450 0.83 -0.5
4,925,808 - AO353_22450 0.83 -0.0
4,925,808 - AO353_22450 0.83 +0.6
4,925,822 + AO353_22450 0.84 -0.4
4,925,822 + AO353_22450 0.84 -0.3
4,925,822 + AO353_22450 0.84 +0.7
4,925,822 + AO353_22450 0.84 +0.3
4,925,822 + AO353_22450 0.84 -0.1
4,925,822 + AO353_22450 0.84 -0.0
4,925,822 + AO353_22450 0.84 -1.8
4,925,822 + AO353_22450 0.84 -0.6
4,925,822 + AO353_22450 0.84 -0.9
4,925,823 - AO353_22450 0.84 -1.8
4,925,823 - AO353_22450 0.84 +0.4
4,925,823 - AO353_22450 0.84 +0.4
4,925,823 - AO353_22450 0.84 +0.1
4,925,823 - AO353_22450 0.84 -0.5
4,925,823 - AO353_22450 0.84 -0.8
4,925,823 - AO353_22450 0.84 -1.0
4,925,823 - AO353_22450 0.84 -2.2
4,925,823 - AO353_22450 0.84 -1.3
4,925,823 - AO353_22450 0.84 -0.1
4,925,998 - -1.5
4,926,176 + -0.9
4,926,176 + +0.5
4,926,176 + -3.7
4,926,177 - -0.6
4,926,177 - +0.7
4,926,195 + +0.4
4,926,196 - -0.5
4,926,208 + -0.4
4,926,208 + -0.4
4,926,208 + +1.0
4,926,209 - -1.1
4,926,209 - +0.6
4,926,283 + +0.4
4,926,283 + -1.6
4,926,283 + -1.1
4,926,283 + +0.5
4,926,358 + +0.5
4,926,370 + -0.6
4,926,389 + +0.2
4,926,389 + -0.3
4,926,389 + -0.6
4,926,390 - -0.0
4,926,390 - -0.0
4,926,390 - -0.7
4,926,471 + -0.9
4,926,471 + -0.9
4,926,503 - -1.9
4,926,503 - -1.3
4,926,503 - -0.0
4,926,511 + -1.3
4,926,512 - -0.8
4,926,657 + AO353_22455 0.18 +0.8
4,926,657 + AO353_22455 0.18 -0.0
4,926,657 + AO353_22455 0.18 -1.2
4,926,657 + AO353_22455 0.18 -0.6
4,926,658 - AO353_22455 0.19 +0.5
4,926,792 + AO353_22455 0.34 -1.5
4,926,889 - AO353_22455 0.45 -1.1
4,926,889 - AO353_22455 0.45 -0.3
4,926,889 - AO353_22455 0.45 -0.3
4,926,889 - AO353_22455 0.45 +0.4
4,926,903 - AO353_22455 0.47 -0.0
4,926,903 - AO353_22455 0.47 -0.6
4,926,903 - AO353_22455 0.47 -1.2

Or see this region's nucleotide sequence