Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05410

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05400 and AO353_05405 are separated by 10 nucleotidesAO353_05405 and AO353_05410 overlap by 1 nucleotidesAO353_05410 and AO353_05415 are separated by 120 nucleotidesAO353_05415 and AO353_05420 are separated by 339 nucleotides AO353_05400: AO353_05400 - peptide transporter, at 1,190,589 to 1,191,500 _05400 AO353_05405: AO353_05405 - peptide ABC transporter ATP-binding protein, at 1,191,511 to 1,192,479 _05405 AO353_05410: AO353_05410 - peptide ABC transporter ATP-binding protein, at 1,192,479 to 1,193,450 _05410 AO353_05415: AO353_05415 - hypothetical protein, at 1,193,571 to 1,193,801 _05415 AO353_05420: AO353_05420 - peptide chain release factor 3, at 1,194,141 to 1,195,724 _05420 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1191.824 kb on - strand, within AO353_05405at 1191.824 kb on - strand, within AO353_05405at 1191.851 kb on + strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1191.852 kb on - strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.178 kb on + strand, within AO353_05405at 1192.179 kb on - strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.189 kb on + strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.190 kb on - strand, within AO353_05405at 1192.205 kb on + strand, within AO353_05405at 1192.206 kb on - strand, within AO353_05405at 1192.206 kb on - strand, within AO353_05405at 1192.252 kb on + strand, within AO353_05405at 1192.252 kb on + strand, within AO353_05405at 1192.276 kb on - strand, within AO353_05405at 1192.381 kb on + strand, within AO353_05405at 1192.381 kb on + strand, within AO353_05405at 1192.382 kb on - strand, within AO353_05405at 1192.382 kb on - strand, within AO353_05405at 1192.453 kb on + strandat 1192.453 kb on + strandat 1192.453 kb on + strandat 1192.453 kb on + strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.454 kb on - strandat 1192.477 kb on + strandat 1192.477 kb on + strandat 1192.518 kb on + strandat 1192.518 kb on + strandat 1192.736 kb on + strand, within AO353_05410at 1192.736 kb on + strand, within AO353_05410at 1192.737 kb on - strand, within AO353_05410at 1192.779 kb on + strand, within AO353_05410at 1192.832 kb on - strand, within AO353_05410at 1192.832 kb on - strand, within AO353_05410at 1192.917 kb on + strand, within AO353_05410at 1192.917 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.097 kb on + strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.098 kb on - strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strandat 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.101 kb on + strand, within AO353_05410at 1193.102 kb on - strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.160 kb on + strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.161 kb on - strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.202 kb on + strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.203 kb on - strand, within AO353_05410at 1193.223 kb on + strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.224 kb on - strand, within AO353_05410at 1193.448 kb on + strandat 1193.625 kb on - strand, within AO353_05415at 1193.625 kb on - strand, within AO353_05415at 1193.775 kb on + strand, within AO353_05415at 1193.775 kb on + strand, within AO353_05415at 1193.776 kb on - strand, within AO353_05415at 1193.801 kb on + strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.802 kb on - strandat 1193.821 kb on + strandat 1193.822 kb on - strandat 1193.822 kb on - strandat 1193.822 kb on - strandat 1193.836 kb on + strandat 1193.836 kb on + strandat 1193.836 kb on + strandat 1193.836 kb on + strandat 1193.837 kb on - strandat 1193.837 kb on - strandat 1193.837 kb on - strandat 1193.837 kb on - strandat 1193.840 kb on + strandat 1193.841 kb on - strandat 1193.849 kb on + strandat 1193.849 kb on + strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.850 kb on - strandat 1193.864 kb on + strandat 1193.881 kb on + strandat 1193.882 kb on - strandat 1193.882 kb on - strandat 1193.890 kb on + strandat 1193.891 kb on - strandat 1193.891 kb on - strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.908 kb on + strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.909 kb on - strandat 1193.917 kb on - strandat 1193.986 kb on - strandat 1193.986 kb on - strandat 1193.986 kb on - strandat 1193.986 kb on - strandat 1194.020 kb on + strandat 1194.020 kb on + strandat 1194.021 kb on - strandat 1194.037 kb on + strandat 1194.037 kb on + strandat 1194.037 kb on + strandat 1194.038 kb on - strandat 1194.038 kb on - strandat 1194.038 kb on - strandat 1194.056 kb on + strandat 1194.057 kb on - strandat 1194.057 kb on - strandat 1194.057 kb on - strandat 1194.057 kb on - strandat 1194.073 kb on + strandat 1194.073 kb on + strandat 1194.074 kb on - strandat 1194.074 kb on - strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.080 kb on + strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.081 kb on - strandat 1194.135 kb on + strandat 1194.135 kb on + strandat 1194.135 kb on + strandat 1194.136 kb on - strandat 1194.142 kb on + strandat 1194.142 kb on + strandat 1194.142 kb on + strandat 1194.142 kb on + strandat 1194.143 kb on - strandat 1194.143 kb on - strandat 1194.143 kb on - strandat 1194.143 kb on - strandat 1194.364 kb on + strand, within AO353_05420at 1194.365 kb on - strand, within AO353_05420

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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1,191,824 - AO353_05405 0.32 -3.3
1,191,824 - AO353_05405 0.32 -2.4
1,191,851 + AO353_05405 0.35 -2.2
1,191,852 - AO353_05405 0.35 -2.1
1,191,852 - AO353_05405 0.35 -1.8
1,191,852 - AO353_05405 0.35 -0.6
1,191,852 - AO353_05405 0.35 -2.4
1,191,852 - AO353_05405 0.35 -0.3
1,192,178 + AO353_05405 0.69 -1.8
1,192,178 + AO353_05405 0.69 -1.5
1,192,178 + AO353_05405 0.69 -1.2
1,192,178 + AO353_05405 0.69 -2.8
1,192,179 - AO353_05405 0.69 -0.8
1,192,189 + AO353_05405 0.70 -0.3
1,192,189 + AO353_05405 0.70 -3.2
1,192,189 + AO353_05405 0.70 -0.5
1,192,189 + AO353_05405 0.70 -2.4
1,192,189 + AO353_05405 0.70 -2.0
1,192,189 + AO353_05405 0.70 -2.2
1,192,190 - AO353_05405 0.70 -3.4
1,192,190 - AO353_05405 0.70 -3.1
1,192,190 - AO353_05405 0.70 -1.3
1,192,190 - AO353_05405 0.70 -2.7
1,192,190 - AO353_05405 0.70 -1.8
1,192,190 - AO353_05405 0.70 -3.8
1,192,190 - AO353_05405 0.70 -1.8
1,192,205 + AO353_05405 0.72 -2.6
1,192,206 - AO353_05405 0.72 -0.9
1,192,206 - AO353_05405 0.72 -1.2
1,192,252 + AO353_05405 0.76 -0.6
1,192,252 + AO353_05405 0.76 -2.9
1,192,276 - AO353_05405 0.79 -1.7
1,192,381 + AO353_05405 0.90 -2.6
1,192,381 + AO353_05405 0.90 -0.8
1,192,382 - AO353_05405 0.90 -2.1
1,192,382 - AO353_05405 0.90 -2.5
1,192,453 + -0.7
1,192,453 + -0.6
1,192,453 + -0.2
1,192,453 + -1.7
1,192,454 - -3.0
1,192,454 - -3.9
1,192,454 - -1.4
1,192,454 - +0.4
1,192,454 - -0.8
1,192,477 + -1.8
1,192,477 + -0.8
1,192,518 + +1.0
1,192,518 + -1.5
1,192,736 + AO353_05410 0.26 -2.3
1,192,736 + AO353_05410 0.26 -1.6
1,192,737 - AO353_05410 0.27 +1.1
1,192,779 + AO353_05410 0.31 -1.3
1,192,832 - AO353_05410 0.36 -1.4
1,192,832 - AO353_05410 0.36 -0.5
1,192,917 + AO353_05410 0.45 -1.9
1,192,917 + AO353_05410 0.45 -1.8
1,193,097 + AO353_05410 0.64 -1.9
1,193,097 + AO353_05410 0.64 -2.0
1,193,097 + AO353_05410 0.64 -1.0
1,193,097 + AO353_05410 0.64 -2.4
1,193,097 + AO353_05410 0.64 -3.0
1,193,098 - AO353_05410 0.64 -2.1
1,193,098 - AO353_05410 0.64 -1.2
1,193,098 - AO353_05410 0.64 -0.8
1,193,101 + AO353_05410 0.64 -0.3
1,193,101 + AO353_05410 0.64 +0.8
1,193,101 + AO353_05410 0.64 -1.6
1,193,101 + AO353_05410 0.64 -1.8
1,193,101 + AO353_05410 0.64 +1.7
1,193,101 + AO353_05410 0.64 -0.1
1,193,101 + AO353_05410 0.64 -1.8
1,193,101 + AO353_05410 0.64 -3.3
1,193,101 + AO353_05410 0.64 -0.8
1,193,101 + AO353_05410 0.64 -3.1
1,193,101 + AO353_05410 0.64 -1.1
1,193,101 + AO353_05410 0.64 -2.4
1,193,101 + AO353_05410 0.64 -2.5
1,193,101 + AO353_05410 0.64 -1.5
1,193,101 + -0.1
1,193,101 + AO353_05410 0.64 -2.6
1,193,101 + AO353_05410 0.64 -0.5
1,193,101 + AO353_05410 0.64 -1.6
1,193,101 + AO353_05410 0.64 -1.3
1,193,101 + AO353_05410 0.64 -2.7
1,193,101 + AO353_05410 0.64 -1.5
1,193,101 + AO353_05410 0.64 -2.1
1,193,101 + AO353_05410 0.64 -0.4
1,193,101 + AO353_05410 0.64 -2.6
1,193,101 + AO353_05410 0.64 -2.2
1,193,101 + AO353_05410 0.64 -0.9
1,193,101 + AO353_05410 0.64 -2.0
1,193,101 + AO353_05410 0.64 -0.7
1,193,101 + AO353_05410 0.64 -1.7
1,193,101 + AO353_05410 0.64 -1.9
1,193,101 + AO353_05410 0.64 +0.4
1,193,101 + AO353_05410 0.64 -1.5
1,193,101 + AO353_05410 0.64 -0.4
1,193,101 + AO353_05410 0.64 +0.4
1,193,102 - AO353_05410 0.64 -2.2
1,193,160 + AO353_05410 0.70 -0.8
1,193,160 + AO353_05410 0.70 -1.3
1,193,160 + AO353_05410 0.70 -1.8
1,193,161 - AO353_05410 0.70 -1.9
1,193,161 - AO353_05410 0.70 -3.4
1,193,161 - AO353_05410 0.70 -1.6
1,193,161 - AO353_05410 0.70 +0.2
1,193,161 - AO353_05410 0.70 -1.1
1,193,161 - AO353_05410 0.70 -1.6
1,193,202 + AO353_05410 0.74 +0.1
1,193,202 + AO353_05410 0.74 -0.7
1,193,202 + AO353_05410 0.74 -2.6
1,193,202 + AO353_05410 0.74 -0.7
1,193,202 + AO353_05410 0.74 -2.9
1,193,202 + AO353_05410 0.74 -1.2
1,193,202 + AO353_05410 0.74 -0.5
1,193,202 + AO353_05410 0.74 -2.5
1,193,202 + AO353_05410 0.74 -1.9
1,193,202 + AO353_05410 0.74 -1.8
1,193,202 + AO353_05410 0.74 -1.2
1,193,202 + AO353_05410 0.74 -2.7
1,193,202 + AO353_05410 0.74 -1.5
1,193,202 + AO353_05410 0.74 -1.0
1,193,203 - AO353_05410 0.74 -0.6
1,193,203 - AO353_05410 0.74 -0.4
1,193,203 - AO353_05410 0.74 -2.7
1,193,203 - AO353_05410 0.74 -1.0
1,193,203 - AO353_05410 0.74 -1.8
1,193,203 - AO353_05410 0.74 -1.4
1,193,203 - AO353_05410 0.74 -2.0
1,193,203 - AO353_05410 0.74 -3.4
1,193,203 - AO353_05410 0.74 -0.3
1,193,203 - AO353_05410 0.74 -2.4
1,193,203 - AO353_05410 0.74 +0.5
1,193,203 - AO353_05410 0.74 -1.6
1,193,203 - AO353_05410 0.74 -0.6
1,193,203 - AO353_05410 0.74 -1.6
1,193,223 + AO353_05410 0.77 -0.6
1,193,224 - AO353_05410 0.77 -0.4
1,193,224 - AO353_05410 0.77 -2.9
1,193,224 - AO353_05410 0.77 -2.1
1,193,448 + -1.0
1,193,625 - AO353_05415 0.23 -0.9
1,193,625 - AO353_05415 0.23 +0.5
1,193,775 + AO353_05415 0.88 -1.5
1,193,775 + AO353_05415 0.88 -1.2
1,193,776 - AO353_05415 0.89 +0.9
1,193,801 + +1.1
1,193,802 - +2.0
1,193,802 - -1.8
1,193,802 - -0.5
1,193,802 - -0.0
1,193,802 - -0.4
1,193,802 - -0.8
1,193,802 - -0.0
1,193,821 + +0.0
1,193,822 - -0.5
1,193,822 - -1.6
1,193,822 - +0.8
1,193,836 + -0.0
1,193,836 + +1.9
1,193,836 + +1.7
1,193,836 + +2.7
1,193,837 - -0.6
1,193,837 - -0.3
1,193,837 - +0.9
1,193,837 - -1.7
1,193,840 + +0.8
1,193,841 - +0.7
1,193,849 + -0.1
1,193,849 + -0.6
1,193,850 - -0.3
1,193,850 - +0.1
1,193,850 - -0.2
1,193,850 - -0.4
1,193,850 - +0.4
1,193,850 - -1.2
1,193,850 - -0.6
1,193,850 - +1.1
1,193,850 - +1.4
1,193,850 - -1.1
1,193,864 + -0.6
1,193,881 + -1.1
1,193,882 - +1.7
1,193,882 - -0.3
1,193,890 + +0.6
1,193,891 - -0.0
1,193,891 - +0.9
1,193,908 + -1.0
1,193,908 + -0.0
1,193,908 + -0.5
1,193,908 + -0.3
1,193,908 + +0.7
1,193,908 + +0.5
1,193,909 - -0.6
1,193,909 - +1.6
1,193,909 - +1.1
1,193,909 - +1.0
1,193,909 - +0.5
1,193,917 - +0.4
1,193,986 - -0.5
1,193,986 - -1.4
1,193,986 - +0.5
1,193,986 - +0.5
1,194,020 + +1.7
1,194,020 + -0.1
1,194,021 - -0.8
1,194,037 + +0.7
1,194,037 + +1.3
1,194,037 + +0.0
1,194,038 - +1.0
1,194,038 - +1.4
1,194,038 - -1.2
1,194,056 + -1.2
1,194,057 - +2.7
1,194,057 - -0.8
1,194,057 - -0.9
1,194,057 - -0.4
1,194,073 + -1.4
1,194,073 + -0.8
1,194,074 - -0.3
1,194,074 - -1.0
1,194,080 + +0.4
1,194,080 + -0.1
1,194,080 + -0.1
1,194,080 + +0.2
1,194,080 + -0.9
1,194,080 + -0.5
1,194,080 + +0.4
1,194,080 + -0.2
1,194,081 - -0.8
1,194,081 - -0.5
1,194,081 - -0.5
1,194,081 - +0.2
1,194,081 - +0.4
1,194,081 - -0.4
1,194,081 - +0.3
1,194,081 - -2.2
1,194,081 - -1.4
1,194,081 - +2.1
1,194,081 - +0.0
1,194,135 + -0.9
1,194,135 + +0.9
1,194,135 + +1.7
1,194,136 - +0.2
1,194,142 + +0.2
1,194,142 + -0.4
1,194,142 + +0.7
1,194,142 + -0.9
1,194,143 - -0.1
1,194,143 - +1.8
1,194,143 - +0.7
1,194,143 - -0.3
1,194,364 + AO353_05420 0.14 -1.4
1,194,365 - AO353_05420 0.14 -0.0

Or see this region's nucleotide sequence