Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03000

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02995 and AO353_03000 are separated by 12 nucleotidesAO353_03000 and AO353_03005 are separated by 63 nucleotides AO353_02995: AO353_02995 - succinylglutamate desuccinylase, at 635,209 to 636,219 _02995 AO353_03000: AO353_03000 - topoisomerase II, at 636,232 to 636,519 _03000 AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929 _03005 Position (kb) 636 637Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 635.351 kb on + strand, within AO353_02995at 635.352 kb on - strand, within AO353_02995at 635.609 kb on + strand, within AO353_02995at 635.609 kb on + strand, within AO353_02995at 635.609 kb on + strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.610 kb on - strand, within AO353_02995at 635.615 kb on + strand, within AO353_02995at 635.616 kb on - strand, within AO353_02995at 635.616 kb on - strand, within AO353_02995at 635.726 kb on + strand, within AO353_02995at 635.777 kb on + strand, within AO353_02995at 635.778 kb on - strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.961 kb on + strand, within AO353_02995at 635.962 kb on - strand, within AO353_02995at 635.962 kb on - strand, within AO353_02995at 635.962 kb on - strand, within AO353_02995at 636.017 kb on - strand, within AO353_02995at 636.017 kb on - strand, within AO353_02995at 636.219 kb on + strandat 636.219 kb on + strandat 636.219 kb on + strandat 636.219 kb on + strandat 636.219 kb on + strandat 636.219 kb on + strandat 636.219 kb on + strandat 636.220 kb on - strandat 636.220 kb on - strandat 636.313 kb on + strand, within AO353_03000at 636.313 kb on + strand, within AO353_03000at 636.314 kb on - strand, within AO353_03000at 636.314 kb on - strand, within AO353_03000at 636.322 kb on - strand, within AO353_03000at 636.523 kb on + strandat 636.541 kb on + strandat 636.541 kb on + strandat 636.541 kb on + strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.542 kb on - strandat 636.603 kb on - strandat 636.619 kb on - strandat 636.741 kb on - strand, within AO353_03005at 636.741 kb on - strand, within AO353_03005at 636.741 kb on - strand, within AO353_03005at 636.741 kb on - strand, within AO353_03005at 636.741 kb on - strand, within AO353_03005at 636.741 kb on - strand, within AO353_03005at 636.808 kb on + strand, within AO353_03005at 636.911 kb on + strand, within AO353_03005at 636.911 kb on + strand, within AO353_03005at 636.911 kb on + strand, within AO353_03005at 636.912 kb on - strand, within AO353_03005at 637.004 kb on + strand, within AO353_03005at 637.004 kb on + strand, within AO353_03005at 637.005 kb on - strand, within AO353_03005at 637.005 kb on - strand, within AO353_03005at 637.005 kb on - strand, within AO353_03005at 637.005 kb on - strand, within AO353_03005at 637.139 kb on + strand, within AO353_03005at 637.139 kb on + strand, within AO353_03005at 637.140 kb on - strand, within AO353_03005at 637.298 kb on + strand, within AO353_03005

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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635,351 + AO353_02995 0.14 +0.6
635,352 - AO353_02995 0.14 +0.1
635,609 + AO353_02995 0.40 -1.0
635,609 + AO353_02995 0.40 -0.0
635,609 + AO353_02995 0.40 +0.7
635,610 - AO353_02995 0.40 +0.0
635,610 - AO353_02995 0.40 -1.1
635,610 - AO353_02995 0.40 -2.4
635,610 - AO353_02995 0.40 -0.5
635,610 - AO353_02995 0.40 +1.6
635,615 + AO353_02995 0.40 +0.4
635,616 - AO353_02995 0.40 -0.1
635,616 - AO353_02995 0.40 -0.5
635,726 + AO353_02995 0.51 +0.7
635,777 + AO353_02995 0.56 +0.7
635,778 - AO353_02995 0.56 +0.2
635,961 + AO353_02995 0.74 -1.3
635,961 + AO353_02995 0.74 -0.2
635,961 + AO353_02995 0.74 -0.2
635,961 + AO353_02995 0.74 -1.9
635,961 + AO353_02995 0.74 -2.1
635,961 + AO353_02995 0.74 -0.1
635,962 - AO353_02995 0.74 +0.1
635,962 - AO353_02995 0.74 +0.6
635,962 - AO353_02995 0.74 +0.9
636,017 - AO353_02995 0.80 -0.5
636,017 - AO353_02995 0.80 +1.3
636,219 + +0.7
636,219 + +1.1
636,219 + -0.6
636,219 + -0.2
636,219 + -1.2
636,219 + +2.0
636,219 + -2.2
636,220 - -2.0
636,220 - +0.1
636,313 + AO353_03000 0.28 +0.8
636,313 + AO353_03000 0.28 -1.1
636,314 - AO353_03000 0.28 -0.7
636,314 - AO353_03000 0.28 +1.4
636,322 - AO353_03000 0.31 -0.1
636,523 + +0.1
636,541 + -0.5
636,541 + -0.8
636,541 + -0.2
636,542 - -0.1
636,542 - +0.2
636,542 - -0.3
636,542 - -1.1
636,542 - +0.7
636,542 - -0.1
636,603 - +2.3
636,619 - +3.0
636,741 - AO353_03005 0.12 +3.8
636,741 - AO353_03005 0.12 +0.3
636,741 - AO353_03005 0.12 +3.5
636,741 - AO353_03005 0.12 +2.3
636,741 - AO353_03005 0.12 +3.7
636,741 - AO353_03005 0.12 +2.3
636,808 + AO353_03005 0.17 +2.1
636,911 + AO353_03005 0.24 +2.4
636,911 + AO353_03005 0.24 +0.5
636,911 + AO353_03005 0.24 +2.5
636,912 - AO353_03005 0.24 +1.3
637,004 + AO353_03005 0.31 +2.3
637,004 + AO353_03005 0.31 +3.1
637,005 - AO353_03005 0.31 +2.1
637,005 - AO353_03005 0.31 +1.7
637,005 - AO353_03005 0.31 +3.2
637,005 - AO353_03005 0.31 +2.4
637,139 + AO353_03005 0.41 +2.6
637,139 + AO353_03005 0.41 +2.8
637,140 - AO353_03005 0.41 +2.2
637,298 + AO353_03005 0.53 +0.7

Or see this region's nucleotide sequence