Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00385

Experiment: Gly-Glu (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00375 and AO353_00380 are separated by 94 nucleotidesAO353_00380 and AO353_00385 are separated by 13 nucleotidesAO353_00385 and AO353_00390 are separated by 42 nucleotides AO353_00375: AO353_00375 - cell division protein FtsX, at 68,303 to 69,553 _00375 AO353_00380: AO353_00380 - pilus assembly protein PilZ, at 69,648 to 70,232 _00380 AO353_00385: AO353_00385 - glycerophosphodiester phosphodiesterase, at 70,246 to 70,968 _00385 AO353_00390: AO353_00390 - pyridine nucleotide-disulfide oxidoreductase, at 71,011 to 72,405 _00390 Position (kb) 70 71Strain fitness (log2 ratio) -2 -1 0 1 2at 69.614 kb on - strandat 69.614 kb on - strandat 69.614 kb on - strandat 69.659 kb on - strandat 69.659 kb on - strandat 69.659 kb on - strandat 69.659 kb on - strandat 69.659 kb on - strandat 69.659 kb on - strandat 69.685 kb on - strandat 69.685 kb on - strandat 69.685 kb on - strandat 69.867 kb on + strand, within AO353_00380at 69.867 kb on + strand, within AO353_00380at 69.867 kb on + strand, within AO353_00380at 69.868 kb on - strand, within AO353_00380at 69.868 kb on - strand, within AO353_00380at 69.868 kb on - strand, within AO353_00380at 70.167 kb on + strand, within AO353_00380at 70.168 kb on - strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.169 kb on + strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.170 kb on - strand, within AO353_00380at 70.230 kb on + strandat 70.231 kb on - strandat 70.231 kb on - strandat 70.231 kb on - strandat 70.231 kb on - strandat 70.234 kb on + strandat 70.235 kb on - strandat 70.235 kb on - strandat 70.235 kb on - strandat 70.235 kb on - strandat 70.235 kb on - strandat 70.253 kb on + strandat 70.253 kb on + strandat 70.254 kb on - strandat 70.258 kb on + strandat 70.258 kb on + strandat 70.259 kb on - strandat 70.335 kb on - strand, within AO353_00385at 70.465 kb on + strand, within AO353_00385at 70.465 kb on + strand, within AO353_00385at 70.465 kb on + strand, within AO353_00385at 70.466 kb on - strand, within AO353_00385at 70.466 kb on - strand, within AO353_00385at 70.466 kb on - strand, within AO353_00385at 70.562 kb on + strand, within AO353_00385at 70.562 kb on + strand, within AO353_00385at 70.563 kb on - strand, within AO353_00385at 70.563 kb on - strandat 70.735 kb on + strand, within AO353_00385at 70.735 kb on + strand, within AO353_00385at 70.735 kb on + strand, within AO353_00385at 70.736 kb on - strand, within AO353_00385at 70.736 kb on - strand, within AO353_00385at 70.771 kb on + strand, within AO353_00385at 70.771 kb on + strand, within AO353_00385at 70.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (N)
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69,614 - -1.5
69,614 - +2.2
69,614 - +0.2
69,659 - +0.1
69,659 - -0.6
69,659 - -1.1
69,659 - +1.2
69,659 - -1.2
69,659 - +1.1
69,685 - +0.1
69,685 - +0.3
69,685 - -0.6
69,867 + AO353_00380 0.37 +0.8
69,867 + AO353_00380 0.37 -0.1
69,867 + AO353_00380 0.37 -1.1
69,868 - AO353_00380 0.38 -0.0
69,868 - AO353_00380 0.38 -0.6
69,868 - AO353_00380 0.38 +0.2
70,167 + AO353_00380 0.89 -1.1
70,168 - AO353_00380 0.89 -0.5
70,169 + AO353_00380 0.89 -0.6
70,169 + AO353_00380 0.89 -1.4
70,169 + AO353_00380 0.89 -1.8
70,169 + AO353_00380 0.89 -0.8
70,169 + AO353_00380 0.89 -0.1
70,169 + AO353_00380 0.89 -0.4
70,169 + AO353_00380 0.89 -0.6
70,169 + AO353_00380 0.89 -0.6
70,169 + AO353_00380 0.89 +0.0
70,169 + AO353_00380 0.89 -0.4
70,170 - AO353_00380 0.89 -0.9
70,170 - AO353_00380 0.89 -1.6
70,170 - AO353_00380 0.89 -0.6
70,170 - AO353_00380 0.89 +0.8
70,170 - AO353_00380 0.89 +0.4
70,170 - AO353_00380 0.89 +0.6
70,170 - AO353_00380 0.89 -1.5
70,170 - AO353_00380 0.89 +1.0
70,170 - AO353_00380 0.89 +0.6
70,170 - AO353_00380 0.89 -0.4
70,170 - AO353_00380 0.89 -0.3
70,170 - AO353_00380 0.89 +1.0
70,170 - AO353_00380 0.89 -2.2
70,170 - AO353_00380 0.89 -1.0
70,170 - AO353_00380 0.89 +0.5
70,230 + +0.7
70,231 - -1.1
70,231 - -0.4
70,231 - -0.2
70,231 - -0.9
70,234 + -0.9
70,235 - +0.5
70,235 - +0.7
70,235 - +0.9
70,235 - -0.9
70,235 - -0.4
70,253 + -0.8
70,253 + -0.1
70,254 - +1.3
70,258 + +0.5
70,258 + +0.6
70,259 - +0.6
70,335 - AO353_00385 0.12 +1.2
70,465 + AO353_00385 0.30 +0.2
70,465 + AO353_00385 0.30 +1.2
70,465 + AO353_00385 0.30 +0.6
70,466 - AO353_00385 0.30 +0.4
70,466 - AO353_00385 0.30 -0.9
70,466 - AO353_00385 0.30 -2.5
70,562 + AO353_00385 0.44 +0.9
70,562 + AO353_00385 0.44 +0.4
70,563 - AO353_00385 0.44 +1.1
70,563 - -0.6
70,735 + AO353_00385 0.68 -0.6
70,735 + AO353_00385 0.68 +0.2
70,735 + AO353_00385 0.68 +1.0
70,736 - AO353_00385 0.68 +0.7
70,736 - AO353_00385 0.68 +1.2
70,771 + AO353_00385 0.73 +0.6
70,771 + AO353_00385 0.73 -1.2
70,923 + -0.0

Or see this region's nucleotide sequence