Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005424

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005422 and ABIE53_005423 are separated by 174 nucleotidesABIE53_005423 and ABIE53_005424 are separated by 31 nucleotidesABIE53_005424 and ABIE53_005425 are separated by 89 nucleotidesABIE53_005425 and ABIE53_005426 are separated by 43 nucleotides ABIE53_005422: ABIE53_005422 - short-subunit dehydrogenase, at 1,699,237 to 1,700,025 _005422 ABIE53_005423: ABIE53_005423 - TetR/AcrR family transcriptional repressor of nem operon, at 1,700,200 to 1,700,811 _005423 ABIE53_005424: ABIE53_005424 - DNA-binding HxlR family transcriptional regulator, at 1,700,843 to 1,701,286 _005424 ABIE53_005425: ABIE53_005425 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 1,701,376 to 1,702,236 _005425 ABIE53_005426: ABIE53_005426 - NADPH:quinone reductase-like Zn-dependent oxidoreductase, at 1,702,280 to 1,703,281 _005426 Position (kb) 1700 1701 1702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1699.968 kb on - strandat 1699.968 kb on - strandat 1700.160 kb on - strandat 1700.167 kb on + strandat 1700.168 kb on - strandat 1700.179 kb on - strandat 1700.282 kb on - strand, within ABIE53_005423at 1700.341 kb on + strand, within ABIE53_005423at 1700.341 kb on + strand, within ABIE53_005423at 1700.341 kb on + strand, within ABIE53_005423at 1700.342 kb on - strand, within ABIE53_005423at 1700.343 kb on + strand, within ABIE53_005423at 1700.343 kb on + strand, within ABIE53_005423at 1700.344 kb on - strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.452 kb on + strand, within ABIE53_005423at 1700.453 kb on - strand, within ABIE53_005423at 1700.453 kb on - strand, within ABIE53_005423at 1700.475 kb on + strand, within ABIE53_005423at 1700.616 kb on + strand, within ABIE53_005423at 1700.625 kb on + strand, within ABIE53_005423at 1700.871 kb on - strandat 1700.969 kb on - strand, within ABIE53_005424at 1701.049 kb on - strand, within ABIE53_005424at 1701.092 kb on + strand, within ABIE53_005424at 1701.092 kb on + strand, within ABIE53_005424at 1701.092 kb on + strand, within ABIE53_005424at 1701.093 kb on - strand, within ABIE53_005424at 1701.093 kb on - strand, within ABIE53_005424at 1701.093 kb on - strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.205 kb on + strand, within ABIE53_005424at 1701.206 kb on - strand, within ABIE53_005424at 1701.206 kb on - strand, within ABIE53_005424at 1701.206 kb on - strand, within ABIE53_005424at 1701.736 kb on + strand, within ABIE53_005425at 1701.736 kb on + strand, within ABIE53_005425at 1701.736 kb on + strand, within ABIE53_005425at 1701.736 kb on + strand, within ABIE53_005425at 1701.736 kb on + strand, within ABIE53_005425at 1701.736 kb on + strand, within ABIE53_005425at 1701.736 kb on + strand, within ABIE53_005425at 1701.737 kb on - strand, within ABIE53_005425at 1701.737 kb on - strand, within ABIE53_005425at 1701.737 kb on - strand, within ABIE53_005425at 1701.737 kb on - strand, within ABIE53_005425at 1701.737 kb on - strand, within ABIE53_005425at 1701.738 kb on + strand, within ABIE53_005425at 1701.738 kb on + strand, within ABIE53_005425at 1701.738 kb on + strand, within ABIE53_005425at 1701.738 kb on + strand, within ABIE53_005425at 1701.738 kb on + strand, within ABIE53_005425at 1701.738 kb on + strand, within ABIE53_005425at 1701.739 kb on - strand, within ABIE53_005425at 1701.739 kb on - strand, within ABIE53_005425at 1701.739 kb on - strand, within ABIE53_005425at 1701.739 kb on - strand, within ABIE53_005425at 1701.806 kb on - strand, within ABIE53_005425at 1701.817 kb on + strand, within ABIE53_005425at 1701.847 kb on + strand, within ABIE53_005425at 1701.914 kb on - strand, within ABIE53_005425at 1701.916 kb on - strand, within ABIE53_005425at 1701.916 kb on - strand, within ABIE53_005425at 1701.916 kb on - strand, within ABIE53_005425at 1701.968 kb on + strand, within ABIE53_005425at 1701.968 kb on + strand, within ABIE53_005425at 1701.968 kb on + strand, within ABIE53_005425at 1701.968 kb on + strand, within ABIE53_005425at 1701.968 kb on + strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.969 kb on - strand, within ABIE53_005425at 1701.970 kb on + strand, within ABIE53_005425at 1701.970 kb on + strand, within ABIE53_005425at 1702.071 kb on - strand, within ABIE53_005425

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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1,699,968 - +0.4
1,699,968 - +0.2
1,700,160 - +0.5
1,700,167 + -0.6
1,700,168 - -0.1
1,700,179 - +0.3
1,700,282 - ABIE53_005423 0.13 -1.4
1,700,341 + ABIE53_005423 0.23 +0.3
1,700,341 + ABIE53_005423 0.23 +1.5
1,700,341 + ABIE53_005423 0.23 -1.1
1,700,342 - ABIE53_005423 0.23 -1.9
1,700,343 + ABIE53_005423 0.23 -1.4
1,700,343 + ABIE53_005423 0.23 +1.2
1,700,344 - ABIE53_005423 0.24 -1.4
1,700,452 + ABIE53_005423 0.41 +0.6
1,700,452 + ABIE53_005423 0.41 +1.2
1,700,452 + ABIE53_005423 0.41 -0.4
1,700,452 + ABIE53_005423 0.41 +1.2
1,700,452 + ABIE53_005423 0.41 +0.8
1,700,452 + ABIE53_005423 0.41 +3.1
1,700,452 + ABIE53_005423 0.41 +2.8
1,700,453 - ABIE53_005423 0.41 -2.2
1,700,453 - ABIE53_005423 0.41 +1.2
1,700,475 + ABIE53_005423 0.45 +0.6
1,700,616 + ABIE53_005423 0.68 -0.2
1,700,625 + ABIE53_005423 0.69 -1.9
1,700,871 - -2.6
1,700,969 - ABIE53_005424 0.28 -1.8
1,701,049 - ABIE53_005424 0.46 -1.6
1,701,092 + ABIE53_005424 0.56 -2.2
1,701,092 + ABIE53_005424 0.56 -0.6
1,701,092 + ABIE53_005424 0.56 -1.6
1,701,093 - ABIE53_005424 0.56 +1.6
1,701,093 - ABIE53_005424 0.56 -1.2
1,701,093 - ABIE53_005424 0.56 -1.0
1,701,205 + ABIE53_005424 0.82 +1.2
1,701,205 + ABIE53_005424 0.82 -0.8
1,701,205 + ABIE53_005424 0.82 -3.3
1,701,205 + ABIE53_005424 0.82 +0.1
1,701,205 + ABIE53_005424 0.82 -3.1
1,701,205 + ABIE53_005424 0.82 -0.1
1,701,205 + ABIE53_005424 0.82 +0.3
1,701,206 - ABIE53_005424 0.82 -1.6
1,701,206 - ABIE53_005424 0.82 +1.2
1,701,206 - ABIE53_005424 0.82 -1.0
1,701,736 + ABIE53_005425 0.42 +1.3
1,701,736 + ABIE53_005425 0.42 -0.4
1,701,736 + ABIE53_005425 0.42 +3.7
1,701,736 + ABIE53_005425 0.42 -2.1
1,701,736 + ABIE53_005425 0.42 +0.5
1,701,736 + ABIE53_005425 0.42 -0.8
1,701,736 + ABIE53_005425 0.42 -0.4
1,701,737 - ABIE53_005425 0.42 -0.4
1,701,737 - ABIE53_005425 0.42 -1.1
1,701,737 - ABIE53_005425 0.42 -1.6
1,701,737 - ABIE53_005425 0.42 -2.4
1,701,737 - ABIE53_005425 0.42 +1.7
1,701,738 + ABIE53_005425 0.42 -0.4
1,701,738 + ABIE53_005425 0.42 -0.6
1,701,738 + ABIE53_005425 0.42 +1.2
1,701,738 + ABIE53_005425 0.42 -0.8
1,701,738 + ABIE53_005425 0.42 +0.5
1,701,738 + ABIE53_005425 0.42 -1.6
1,701,739 - ABIE53_005425 0.42 -2.1
1,701,739 - ABIE53_005425 0.42 +0.2
1,701,739 - ABIE53_005425 0.42 +0.2
1,701,739 - ABIE53_005425 0.42 -1.4
1,701,806 - ABIE53_005425 0.50 +1.2
1,701,817 + ABIE53_005425 0.51 +0.2
1,701,847 + ABIE53_005425 0.55 +0.7
1,701,914 - ABIE53_005425 0.62 -0.4
1,701,916 - ABIE53_005425 0.63 -1.4
1,701,916 - ABIE53_005425 0.63 +0.2
1,701,916 - ABIE53_005425 0.63 +0.2
1,701,968 + ABIE53_005425 0.69 +1.5
1,701,968 + ABIE53_005425 0.69 +0.5
1,701,968 + ABIE53_005425 0.69 -0.8
1,701,968 + ABIE53_005425 0.69 -3.5
1,701,968 + ABIE53_005425 0.69 +1.4
1,701,969 - ABIE53_005425 0.69 -1.1
1,701,969 - ABIE53_005425 0.69 -0.9
1,701,969 - ABIE53_005425 0.69 -1.1
1,701,969 - ABIE53_005425 0.69 -1.4
1,701,969 - ABIE53_005425 0.69 -1.4
1,701,969 - ABIE53_005425 0.69 +1.3
1,701,969 - ABIE53_005425 0.69 -1.4
1,701,970 + ABIE53_005425 0.69 -0.4
1,701,970 + ABIE53_005425 0.69 -0.4
1,702,071 - ABIE53_005425 0.81 -1.6

Or see this region's nucleotide sequence