Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005156

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sterile_soil; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,408,083	-		ABIE53_005155	0.43	-0.8
1,408,115	+		ABIE53_005155	0.45	+2.4
1,408,133	+		ABIE53_005155	0.47	-1.8
1,408,133	+		ABIE53_005155	0.47	-3.3
1,408,134	-		ABIE53_005155	0.47	+2.0
1,408,134	-		ABIE53_005155	0.47	-3.2
1,408,218	+		ABIE53_005155	0.54	+2.1
1,408,220	+		ABIE53_005155	0.54	+1.8
1,408,220	+		ABIE53_005155	0.54	-0.3
1,408,220	+		ABIE53_005155	0.54	-2.5
1,408,220	+		ABIE53_005155	0.54	-0.8
1,408,220	+		ABIE53_005155	0.54	-2.8
1,408,220	+		ABIE53_005155	0.54	+0.4
1,408,221	-		ABIE53_005155	0.55	-0.3
1,408,221	-		ABIE53_005155	0.55	+0.4
1,408,293	+		ABIE53_005155	0.61	-1.8
1,408,293	+		ABIE53_005155	0.61	-1.6
1,408,294	-		ABIE53_005155	0.61	-1.1
1,408,294	-		ABIE53_005155	0.61	-1.8
1,408,294	-		ABIE53_005155	0.61	-1.8
1,408,320	-		ABIE53_005155	0.63	+0.2
1,408,325	+		ABIE53_005155	0.63	+1.2
1,408,325	+		ABIE53_005155	0.63	+0.3
1,408,325	+		ABIE53_005155	0.63	-0.8
1,408,326	-		ABIE53_005155	0.64	-2.5
1,408,326	-		ABIE53_005155	0.64	-1.6
1,408,358	+		ABIE53_005155	0.66	-0.3
1,408,358	+		ABIE53_005155	0.66	+0.9
1,408,358	+		ABIE53_005155	0.66	-0.9
1,408,359	-		ABIE53_005155	0.66	+1.2
1,408,359	-		ABIE53_005155	0.66	-1.2
1,408,391	+		ABIE53_005155	0.69	-1.3
1,408,443	-		ABIE53_005155	0.74	+0.1
1,408,443	-		ABIE53_005155	0.74	-2.1
1,408,443	-		ABIE53_005155	0.74	+0.9
1,408,443	-		ABIE53_005155	0.74	+2.6
1,408,596	-		ABIE53_005155	0.87	-0.3
1,408,643	+				+0.2
1,408,643	+				-0.3
1,408,643	+				+1.2
1,408,643	+				+0.7
1,408,643	+				-1.6
1,408,643	+				-0.8
1,408,644	-				-1.9
1,408,644	-				+0.2
1,408,644	-				-2.2
1,408,644	-				-1.1
1,408,644	-				+0.1
1,408,644	-				-2.0
1,408,644	-				+1.0
1,408,670	+				+1.5
1,408,671	-				-0.8
1,408,671	-				-0.3
1,408,800	-				-0.1
1,408,839	+				+0.2
1,408,840	-				+1.7
1,408,844	+				-2.9
1,408,844	+				+2.5
1,408,844	+				-0.4
1,408,845	-				+0.2
1,408,845	-				-2.1
1,408,845	-				+1.1
1,408,845	-				-2.1
1,408,910	-				-0.2
1,408,941	+				-1.1
1,408,942	-				+0.7
1,408,942	-				-1.4
1,408,942	-				-2.1
1,408,965	+				+0.4
1,408,965	+				+1.4
1,408,965	+				+0.2
1,408,965	+				+1.6
1,408,965	+				+1.2
1,408,965	+				+0.2
1,408,965	+				+2.2
1,408,965	+				+1.4
1,408,966	-				+0.2
1,408,966	-				-1.6
1,408,966	-				+1.2
1,408,966	-				+1.2
1,408,966	-				-1.8
1,408,966	-				+0.7
1,408,966	-				-1.4
1,408,966	-				-2.4
1,408,966	-				+0.4
1,408,966	-				-0.3
1,408,966	-				-0.4
1,408,966	-				-0.3
1,408,966	-				+0.4
1,409,024	+				+1.2
1,409,024	+				-1.9
1,409,254	+		ABIE53_005156	0.25	-1.4
1,409,255	-		ABIE53_005156	0.25	-0.8
1,409,255	-		ABIE53_005156	0.25	-1.4
1,409,255	-		ABIE53_005156	0.25	+0.5
1,409,255	-		ABIE53_005156	0.25	-0.7
1,409,350	+		ABIE53_005156	0.36	-0.5
1,409,352	+		ABIE53_005156	0.37	+0.1
1,409,352	+		ABIE53_005156	0.37	-2.4
1,409,353	-		ABIE53_005156	0.37	-1.3
1,409,353	-		ABIE53_005156	0.37	-3.2
1,409,377	+		ABIE53_005156	0.40	-0.5
1,409,377	+		ABIE53_005156	0.40	+0.2
1,409,377	+		ABIE53_005156	0.40	+1.1
1,409,377	+		ABIE53_005156	0.40	-0.6
1,409,377	+		ABIE53_005156	0.40	+1.5
1,409,377	+		ABIE53_005156	0.40	-2.1
1,409,377	+		ABIE53_005156	0.40	+3.2
1,409,377	+		ABIE53_005156	0.40	-0.1
1,409,377	+		ABIE53_005156	0.40	+1.2
1,409,377	+		ABIE53_005156	0.40	+1.0
1,409,377	+		ABIE53_005156	0.40	+1.0
1,409,377	+		ABIE53_005156	0.40	-0.8
1,409,378	-		ABIE53_005156	0.40	+0.1
1,409,378	-		ABIE53_005156	0.40	+1.5
1,409,378	-		ABIE53_005156	0.40	-2.1
1,409,378	-		ABIE53_005156	0.40	-0.4
1,409,378	-		ABIE53_005156	0.40	-1.4
1,409,378	-		ABIE53_005156	0.40	-2.1
1,409,378	-		ABIE53_005156	0.40	-0.2
1,409,378	-		ABIE53_005156	0.40	+1.3
1,409,378	-		ABIE53_005156	0.40	+0.2
1,409,398	+		ABIE53_005156	0.42	+2.2
1,409,399	-		ABIE53_005156	0.42	-1.4
1,409,399	-		ABIE53_005156	0.42	+1.2
1,409,399	-		ABIE53_005156	0.42	-0.6
1,409,504	-		ABIE53_005156	0.55	-2.1
1,409,504	-		ABIE53_005156	0.55	-2.5
1,409,504	-		ABIE53_005156	0.55	+0.2
1,409,659	-		ABIE53_005156	0.74	+0.2
1,409,665	+		ABIE53_005156	0.75	-1.4
1,409,666	-		ABIE53_005156	0.75	+0.2
1,409,800	+				-1.1
1,409,801	-				+0.8
1,409,801	-				-1.0
1,409,824	+				-0.8
1,409,824	+				-0.8
1,409,825	-				+0.4
1,409,867	-				+0.0
1,409,934	+				+0.2
1,409,934	+				+1.9
1,409,934	+				+0.2
1,409,957	+				-1.6
1,409,958	-				-2.7
1,409,958	-				-1.1
1,410,049	+				+1.7
1,410,050	-				-0.6
1,410,160	+		ABIE53_005157	0.19	-0.8
1,410,160	+		ABIE53_005157	0.19	+0.2
1,410,160	+		ABIE53_005157	0.19	-1.1
1,410,160	+		ABIE53_005157	0.19	+2.9
1,410,160	+		ABIE53_005157	0.19	-1.8
1,410,161	-		ABIE53_005157	0.19	+0.9
1,410,280	+		ABIE53_005157	0.29	-0.8
1,410,280	+		ABIE53_005157	0.29	+0.7
1,410,281	-		ABIE53_005157	0.29	+0.6
1,410,313	+		ABIE53_005157	0.32	+0.2
1,410,314	-		ABIE53_005157	0.32	-2.5
1,410,314	-		ABIE53_005157	0.32	-0.8
1,410,319	+		ABIE53_005157	0.33	-1.6
1,410,319	+		ABIE53_005157	0.33	+0.8
1,410,320	-		ABIE53_005157	0.33	+0.1
1,410,362	+		ABIE53_005157	0.37	+0.2
1,410,363	-		ABIE53_005157	0.37	+2.7
1,410,535	+		ABIE53_005157	0.52	+0.6
1,410,535	+		ABIE53_005157	0.52	+1.5
1,410,535	+		ABIE53_005157	0.52	-1.4
1,410,536	-		ABIE53_005157	0.52	-1.4
1,410,536	-		ABIE53_005157	0.52	+0.2
1,410,592	+		ABIE53_005157	0.57	+0.2
1,410,593	-		ABIE53_005157	0.57	-1.8
1,410,593	-		ABIE53_005157	0.57	+1.5
1,410,593	-		ABIE53_005157	0.57	+0.2
1,410,858	+		ABIE53_005157	0.81	-1.3
1,410,858	+		ABIE53_005157	0.81	+2.5
1,410,859	-		ABIE53_005157	0.81	+1.2
1,410,859	-		ABIE53_005157	0.81	-3.5
1,410,859	-		ABIE53_005157	0.81	-0.4